Rorug07G0233200

repressing transcription factor binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000518
Physical Location & Seq
Forward (+)
21401552 .. 21402400
849 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0233200.1

Sequence Viewer

Length: 636 bp
ATGCTCCTCAACCCTATTCCTCACTCTAGTGCTGCGATGAGTGAAGATTTTGAACCTACCGATGATGATTGCCAGTATTTGGAAGGGCGCTATGGGCCAAATGCCTGTTTTTCTCAAAGAATTGAAGATAAACTGGACCTTGACTCGAGATGTGCTGTAGTGGTCAAACTCATGTGTAAGCCAAATTCCTCCAATGCTCTTAAATTCATGCTTACTAGTTTGAAACGTAAATGGGACCCAAAATTGGTGAGATGCTCTTTGCTAGTCTGGTCATCAGTGTTCTTAGACAATGCTGCCTTAACTTCACGGACAACGAGCTTAGGGAGCTCATCCCAACTTGCAGCCATCAAGTCCTTAAAAGCATTAAGCAGCATAGGGTCTTTAATCTCGAATGACCCACATCGTTACTGGAAAACCGCCTACTCCCCAAACTCGTTGAAAGAGGAGACCTGTGTTCATCTAAAGAAAATTGAAGTGGAATGGATAAGAGGGAGTACCAGAAGATTGGTTGGAGTTTGGGGAAGCAAAATTGAAGAGGGTTCGAGCAGCGCCGGCGGGGTGGTGGTGAGGTTGGTGACGTGGCAGCTGCTGGGTGGCGGCGGCGGCGGCTGTTCGGTAAGATCTGGAAGAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000118 GO:0000228 GO:0000785 GO:0000790 GO:0001085 GO:0001103 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0004407 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005813 GO:0005815 GO:0005856 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0008026 GO:0008094 GO:0008134 GO:0008150 GO:0008152 GO:0008270 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0015630 GO:0016043 GO:0016462 GO:0016569 GO:0016570 GO:0016575 GO:0016581 GO:0016787 GO:0016810 GO:0016811 GO:0016817 GO:0016818 GO:0016887 GO:0017053 GO:0017111 GO:0019213 GO:0019219 GO:0019222 GO:0019538 GO:0019899 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032392 GO:0032508 GO:0032991 GO:0033558 GO:0035601 GO:0036211 GO:0042623 GO:0042826 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0046872 GO:0046914 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070035 GO:0070491 GO:0070603 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0090545 GO:0090568 GO:0097159 GO:0098732 GO:0140096 GO:0140097 GO:1901363 GO:1901564 GO:1902494 GO:1903506 GO:1904949 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_1 Acetyltransf_10 Agenet Jas PHD

Protein Analysis

211

Amino Acids

23.09

Weight (kDa)

8.98

Isoelectric Point (pI)

39.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000518)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21681 FvH4_3g29252 FvH4_3g38950 FvH4_3g44310 FvH4_5g29400
malus_domestica MD03G1066300.v1.1
rosa_chinensis RchiOBHm_Chr2g0087341 RchiOBHm_Chr7g0225691 RchiOBHm_Chr7g0225721 RchiOBHm_Chr7g0225751 RchiOBHm_Chr7g0225781 RchiOBHm_Chr7g0225811 RchiOBHm_Chr7g0225821 RchiOBHm_Chr7g0225841 RchiOBHm_Chr7g0225941
rosa_laevigata RLG00000001777 RLG00000001779 RLG00000001787 RLG00000001796 RLG00000015858 RLG00000018399 RLG00000030202
rosa_multiflora Rmu_co7995100.1_g000001 Rmu_sc0003367.1_g000025 Rmu_sc0004082.1_g000018 Rmu_sc0006064.1_g000002 Rmu_sc0011806.1_g000001 Rmu_sc0014642.1_g000005 Rmu_sc0014767.1_g000003 Rmu_sc0015723.1_g000001 Rmu_sc0030795.1_g000001 Rmu_sc0033647.1_g000001
rosa_roxburghii Rroxscaffold_1G00028220 Rroxscaffold_2G00089180 Rroxscaffold_2G00125860 Rroxscaffold_3G00233350 Rroxscaffold_3G00239570 Rroxscaffold_4G00325690 Rroxscaffold_5G00348560 Rroxscaffold_7G00198070
rosa_rugosa Rorug01G0045600 Rorug01G0474300.1 Rorug07G0220000 Rorug07G0220100 Rorug07G0220200 Rorug07G0220300 Rorug07G0232800 Rorug07G0233000 Rorug07G0233100 Rorug07G0233100 Rorug07G0233200 Rorug07G0233300.1
rosa_samantha Rh1AG061100 Rh1BG052200 Rh1CG063300 Rh1CG063600 Rh1DG067700 Rh2AG027900 Rh2BG027400 Rh2CG028200 Rh2DG028000 Rh7AG369700 Rh7AG370100 Rh7AG371200 Rh7AG387800 Rh7BG366500 Rh7BG366800 Rh7BG367000 Rh7BG367600 Rh7CG388600 Rh7CG389000 Rh7CG389800 Rh7CG407400 Rh7DG377400 Rh7DG377500 Rh7DG377900 Rh7DG378600 Rh7DG378700 Rh7DG378800
rosa_wichuraiana Rw0G020970 Rw0G020980 Rw1G005200 Rw2G002210 Rw7G031830 Rw7G031860 Rw7G031900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 79
AciI CCGC 6 cut(s) 417, 555, 597, 600, 603, 606
AcsI RAATTY 2 cut(s) 184, 203
AfaI GTAC 1 cut(s) 496
AfiI CCNNNNNNNGG 2 cut(s) 79, 244
AgsI TTSAA 6 cut(s) 53, 125, 223, 439, 473, 533
AhlI ACTAGT 1 cut(s) 215
AjiI CACGTC 1 cut(s) 579
AleI CACNNNNGTG 1 cut(s) 27
AluBI AGCT 3 cut(s) 318, 327, 586
AluI AGCT 3 cut(s) 318, 327, 586
Alw21I GWGCWC 1 cut(s) 329
Alw26I GTCTC 1 cut(s) 440
AlwNI CAGNNNCTG 1 cut(s) 589
Ama87I CYCGRG 1 cut(s) 145
AoxI GGCC 1 cut(s) 95
ApeKI GCWGC 7 cut(s) 32, 293, 341, 369, 546, 583, 586
ApoI RAATTY 2 cut(s) 184, 203
AspLEI GCGC 2 cut(s) 90, 551
AspS9I GGNCC 3 cut(s) 95, 136, 235
AsuHPI GGTGA 3 cut(s) 259, 577, 586
AvaI CYCGRG 1 cut(s) 145
AvaII GGWCC 2 cut(s) 136, 235
BanII GRGCYC 1 cut(s) 329
Bbv12I GWGCWC 1 cut(s) 329
BbvI GCAGC 7 cut(s) 19, 280, 353, 381, 558, 573, 595
BccI CCATC 1 cut(s) 353
BcoDI GTCTC 1 cut(s) 440
BcuI ACTAGT 1 cut(s) 215
BfaI CTAG 3 cut(s) 27, 216, 263
BfmI CTRYAG 1 cut(s) 156
BfoI RGCGCY 2 cut(s) 91, 552
BglII AGATCT 1 cut(s) 620
Bme18I GGWCC 2 cut(s) 136, 235
BmeT110I CYCGRG 1 cut(s) 145
BmgBI CACGTC 1 cut(s) 579
BmgT120I GGNCC 3 cut(s) 95, 136, 235
BmiI GGNNCC 2 cut(s) 236, 237
BmsI GCATC 1 cut(s) 242
Bpu10I CCTNAGC 1 cut(s) 319
BsaI GGTCTC 1 cut(s) 440
Bsc4I CCNNNNNNNGG 2 cut(s) 79, 244
Bse118I RCCGGY 1 cut(s) 551
Bse1I ACTGG 3 cut(s) 73, 138, 413
BseGI GGATG 1 cut(s) 329
BseLI CCNNNNNNNGG 2 cut(s) 79, 244
BseNI ACTGG 3 cut(s) 73, 138, 413
BseRI GAGGAG 1 cut(s) 458
BseXI GCAGC 7 cut(s) 19, 280, 353, 381, 558, 573, 595
BseYI CCCAGC 1 cut(s) 589
BshFI GGCC 1 cut(s) 97
BsiHKAI GWGCWC 1 cut(s) 329
BsiHKCI CYCGRG 1 cut(s) 145
BsiSI CCGG 1 cut(s) 552
BslFI GGGAC 1 cut(s) 248
BslI CCNNNNNNNGG 2 cut(s) 79, 244
BsmAI GTCTC 1 cut(s) 440
BsmFI GGGAC 1 cut(s) 248
BsnI GGCC 1 cut(s) 97
Bso31I GGTCTC 1 cut(s) 440
BsoBI CYCGRG 1 cut(s) 145
Bsp1286I GDGCHC 1 cut(s) 329
Bsp143I GATC 1 cut(s) 620
BspACI CCGC 6 cut(s) 417, 555, 597, 600, 603, 606
BspANI GGCC 1 cut(s) 97
BspLI GGNNCC 2 cut(s) 236, 237
BspTNI GGTCTC 1 cut(s) 440
BsrFI RCCGGY 1 cut(s) 551
BsrI ACTGG 3 cut(s) 73, 138, 413
BssAI RCCGGY 1 cut(s) 551
BssMI GATC 1 cut(s) 620
Bst6I CTCTTC 2 cut(s) 528, 622
BstC8I GCNNGC 1 cut(s) 553
BstDEI CTNAG 2 cut(s) 283, 319
BstF5I GGATG 1 cut(s) 329
BstH2I RGCGCY 2 cut(s) 91, 552
BstHHI GCGC 2 cut(s) 90, 551
BstKTI GATC 1 cut(s) 623
BstMAI GTCTC 1 cut(s) 440
BstMBI GATC 1 cut(s) 620
BstMWI GCNNNNNNNGC 5 cut(s) 94, 324, 552, 603, 606
BstSFI CTRYAG 1 cut(s) 156
BstV1I GCAGC 7 cut(s) 19, 280, 353, 381, 558, 573, 595
BstX2I RGATCY 1 cut(s) 620
BstXI CCANNNNNNTGG 1 cut(s) 505
BstYI RGATCY 1 cut(s) 620
BsuRI GGCC 1 cut(s) 97
BtgZI GCGATG 1 cut(s) 50
BtrI CACGTC 1 cut(s) 579
BtsCI GGATG 1 cut(s) 329
BtsIMutI CAGTG 1 cut(s) 282
Cac8I GCNNGC 1 cut(s) 553
CaiI CAGNNNCTG 1 cut(s) 589
CfoI GCGC 2 cut(s) 90, 551
Cfr10I RCCGGY 1 cut(s) 551
Cfr13I GGNCC 3 cut(s) 95, 136, 235
Csp6I GTAC 1 cut(s) 495
CviAII CATG 2 cut(s) 172, 208
CviJI RGCY 7 cut(s) 97, 181, 318, 327, 344, 586, 609
CviKI_1 RGCY 7 cut(s) 97, 181, 318, 327, 344, 586, 609
CviQI GTAC 1 cut(s) 495
DdeI CTNAG 2 cut(s) 283, 319
DpnI GATC 1 cut(s) 622
DpnII GATC 1 cut(s) 620
Eam1104I CTCTTC 2 cut(s) 528, 622
EarI CTCTTC 2 cut(s) 528, 622
Ecl136II GAGCTC 1 cut(s) 327
Eco24I GRGCYC 1 cut(s) 329
Eco31I GGTCTC 1 cut(s) 440
Eco47I GGWCC 2 cut(s) 136, 235
Eco53kI GAGCTC 1 cut(s) 327
Eco88I CYCGRG 1 cut(s) 145
EcoICRI GAGCTC 1 cut(s) 327
EcoO109I RGGNCCY 1 cut(s) 235
EcoT38I GRGCYC 1 cut(s) 329
FaeI CATG 2 cut(s) 175, 211
FaiI YATR 4 cut(s) 93, 173, 209, 374
FaqI GGGAC 1 cut(s) 248
FatI CATG 2 cut(s) 171, 207
FauI CCCGC 1 cut(s) 548
FokI GGATG 1 cut(s) 316
FriOI GRGCYC 1 cut(s) 329
FspBI CTAG 3 cut(s) 27, 216, 263
GlaI GCGC 2 cut(s) 89, 550
GsaI CCCAGC 1 cut(s) 593
HaeII RGCGCY 2 cut(s) 91, 552
HaeIII GGCC 1 cut(s) 97
HapII CCGG 1 cut(s) 552
HhaI GCGC 2 cut(s) 90, 551
Hin1II CATG 2 cut(s) 175, 211
Hin6I GCGC 2 cut(s) 88, 549
HinP1I GCGC 2 cut(s) 88, 549
HinfI GANTC 1 cut(s) 143
HpaII CCGG 1 cut(s) 552
HphI GGTGA 3 cut(s) 259, 577, 586
Hpy188III TCNNGA 3 cut(s) 147, 388, 624
HpyAV CCTTC 1 cut(s) 77
HpyCH4IV ACGT 2 cut(s) 226, 578
HpyCH4V TGCA 1 cut(s) 341
HpyF10VI GCNNNNNNNGC 5 cut(s) 94, 324, 552, 603, 606
HpyF3I CTNAG 2 cut(s) 283, 319
HpySE526I ACGT 2 cut(s) 226, 578
Hsp92II CATG 2 cut(s) 175, 211
HspAI GCGC 2 cut(s) 88, 549
KflI GGGWCCC 1 cut(s) 235
KroI GCCGGC 1 cut(s) 551
KroNI GCCGGC 1 cut(s) 553
Kzo9I GATC 1 cut(s) 620
LmnI GCTCC 2 cut(s) 9, 324
Lsp1109I GCAGC 7 cut(s) 19, 280, 353, 381, 558, 573, 595
LweI GCATC 1 cut(s) 242
MaeI CTAG 3 cut(s) 27, 216, 263
MaeII ACGT 2 cut(s) 226, 578
MaeIII GTNAC 2 cut(s) 404, 574
MalI GATC 1 cut(s) 622
MboI GATC 1 cut(s) 620
MboII GAAGA 4 cut(s) 56, 137, 513, 545
MflI RGATCY 1 cut(s) 620
MhlI GDGCHC 1 cut(s) 329
MluCI AATT 6 cut(s) 120, 184, 203, 242, 468, 528
MlyI GAGTC 1 cut(s) 137
MmeI TCCRAC 1 cut(s) 490
MnlI CCTC 7 cut(s) 17, 30, 199, 436, 482, 529, 561
MreI CGCCGGCG 1 cut(s) 551
MroNI GCCGGC 1 cut(s) 551
MseI TTAA 5 cut(s) 201, 299, 356, 365, 383
MslI CAYNNNNRTG 1 cut(s) 27
MspA1I CMGCKG 1 cut(s) 586
MspI CCGG 1 cut(s) 552
MwoI GCNNNNNNNGC 5 cut(s) 94, 324, 552, 603, 606
NaeI GCCGGC 1 cut(s) 553
NdeII GATC 1 cut(s) 620
NgoMIV GCCGGC 1 cut(s) 551
NlaIII CATG 2 cut(s) 175, 211
NlaIV GGNNCC 2 cut(s) 236, 237
NmuCI GTSAC 1 cut(s) 574
OliI CACNNNNGTG 1 cut(s) 27
PaeR7I CTCGAG 1 cut(s) 145
PdiI GCCGGC 1 cut(s) 553
PflMI CCANNNNNTGG 1 cut(s) 79
PleI GAGTC 1 cut(s) 137
PpsI GAGTC 1 cut(s) 137
PpuMI RGGWCCY 1 cut(s) 235
Psp124BI GAGCTC 1 cut(s) 329
Psp5II RGGWCCY 1 cut(s) 235
PspFI CCCAGC 1 cut(s) 589
PspN4I GGNNCC 2 cut(s) 236, 237
PspPI GGNCC 3 cut(s) 95, 136, 235
PspPPI RGGWCCY 1 cut(s) 235
PstNI CAGNNNCTG 1 cut(s) 589
PsuI RGATCY 1 cut(s) 620
PvuII CAGCTG 1 cut(s) 586
RsaI GTAC 1 cut(s) 496
RsaNI GTAC 1 cut(s) 495
RseI CAYNNNNRTG 1 cut(s) 27
SacI GAGCTC 1 cut(s) 329
SaqAI TTAA 5 cut(s) 201, 299, 356, 365, 383
Sau3AI GATC 1 cut(s) 620
Sau96I GGNCC 3 cut(s) 95, 136, 235
SchI GAGTC 1 cut(s) 137
SduI GDGCHC 1 cut(s) 329
SetI ASST 9 cut(s) 58, 141, 229, 320, 329, 452, 572, 581, 588
SfaNI GCATC 1 cut(s) 242
SfcI CTRYAG 1 cut(s) 156
Sfr274I CTCGAG 1 cut(s) 145
SgrAI CRCCGGYG 1 cut(s) 551
SinI GGWCC 2 cut(s) 136, 235
SlaI CTCGAG 1 cut(s) 145
SmiMI CAYNNNNRTG 1 cut(s) 27
SmlI CTYRAG 1 cut(s) 145
SmoI CTYRAG 1 cut(s) 145
SpeI ACTAGT 1 cut(s) 215
Sse9I AATT 6 cut(s) 120, 184, 203, 242, 468, 528
SsiI CCGC 6 cut(s) 417, 555, 597, 600, 603, 606
SspMI CTAG 3 cut(s) 27, 216, 263
SstI GAGCTC 1 cut(s) 329
TaiI ACGT 2 cut(s) 229, 581
TaqI TCGA 3 cut(s) 146, 389, 542
TasI AATT 6 cut(s) 120, 184, 203, 242, 468, 528
TauI GCSGC 4 cut(s) 600, 603, 606, 609
Tru1I TTAA 5 cut(s) 201, 299, 356, 365, 383
Tru9I TTAA 5 cut(s) 201, 299, 356, 365, 383
TscAI CASTG 1 cut(s) 282
TseFI GTSAC 1 cut(s) 574
TseI GCWGC 7 cut(s) 32, 293, 341, 369, 546, 583, 586
Tsp45I GTSAC 1 cut(s) 574
TspDTI ATGAA 2 cut(s) 196, 446
TspGWI ACGGA 1 cut(s) 322
TspRI CASTG 1 cut(s) 282
Van91I CCANNNNNTGG 1 cut(s) 79
VpaK11BI GGWCC 2 cut(s) 136, 235
XapI RAATTY 2 cut(s) 184, 203
XcmI CCANNNNNNNNNTGG 1 cut(s) 405
XhoI CTCGAG 1 cut(s) 145
XspI CTAG 3 cut(s) 27, 216, 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.