Rorug07G0220100

repressing transcription factor binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000518
Physical Location & Seq
Forward (+)
19805809 .. 19806279
471 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0220100.1

Sequence Viewer

Length: 471 bp
ATGGGAGCGTCGCGCAAGGGCGGCACCAACCTTCAACCGTCGAAGGAACTTTCGGCCATCGAGATGGATTATTTGGCACAACAAGCGGCAGCCGAGGCTCAGCTCCAGGCAGTGCGCGACTCGGTTGATGAAATTCGCTCTGCCCAGGAGTTGATTCGTTCTGAAAACGCTGAAATTCATGCTTTGATTCACTCTGAAAATGCTGAGATTCATGCTCAGAATGCAGAGTTTCGCTCTCAGCTGTTGGAGGAACTTCGGGCTCTTCGAGTCAATTCTGAGACCCGCTCCGACCCTGTTCCAGTCTCTCCGAACCCGCCGCGTTCCGGCTCTCTTCCGGCCTCTCAACCGGCAAACTCGAGGGTTTCAGTCTCAGAACCAATTTGTCCTCAAGGGTTAGGGATTTTGAGCATCACTCCTGAGGAAGTTTCTGTTGAATACTTCAGAATTGGATCACAGAGTATTTGGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000118 GO:0000228 GO:0000785 GO:0000790 GO:0001085 GO:0001103 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0004407 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005813 GO:0005815 GO:0005856 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0008026 GO:0008094 GO:0008134 GO:0008150 GO:0008152 GO:0008270 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0015630 GO:0016043 GO:0016462 GO:0016569 GO:0016570 GO:0016575 GO:0016581 GO:0016787 GO:0016810 GO:0016811 GO:0016817 GO:0016818 GO:0016887 GO:0017053 GO:0017111 GO:0019213 GO:0019219 GO:0019222 GO:0019538 GO:0019899 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032392 GO:0032508 GO:0032991 GO:0033558 GO:0035601 GO:0036211 GO:0042623 GO:0042826 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0046872 GO:0046914 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070035 GO:0070491 GO:0070603 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0090545 GO:0090568 GO:0097159 GO:0098732 GO:0140096 GO:0140097 GO:1901363 GO:1901564 GO:1902494 GO:1903506 GO:1904949 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_1 Acetyltransf_10 Agenet Jas PHD

Protein Analysis

156

Amino Acids

17.01

Weight (kDa)

4.99

Isoelectric Point (pI)

78.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000518)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21681 FvH4_3g29252 FvH4_3g38950 FvH4_3g44310 FvH4_5g29400
malus_domestica MD03G1066300.v1.1
rosa_chinensis RchiOBHm_Chr2g0087341 RchiOBHm_Chr7g0225691 RchiOBHm_Chr7g0225721 RchiOBHm_Chr7g0225751 RchiOBHm_Chr7g0225781 RchiOBHm_Chr7g0225811 RchiOBHm_Chr7g0225821 RchiOBHm_Chr7g0225841 RchiOBHm_Chr7g0225941
rosa_laevigata RLG00000001777 RLG00000001779 RLG00000001787 RLG00000001796 RLG00000015858 RLG00000018399 RLG00000030202
rosa_multiflora Rmu_co7995100.1_g000001 Rmu_sc0003367.1_g000025 Rmu_sc0004082.1_g000018 Rmu_sc0006064.1_g000002 Rmu_sc0011806.1_g000001 Rmu_sc0014642.1_g000005 Rmu_sc0014767.1_g000003 Rmu_sc0015723.1_g000001 Rmu_sc0030795.1_g000001 Rmu_sc0033647.1_g000001
rosa_roxburghii Rroxscaffold_1G00028220 Rroxscaffold_2G00089180 Rroxscaffold_2G00125860 Rroxscaffold_3G00233350 Rroxscaffold_3G00239570 Rroxscaffold_4G00325690 Rroxscaffold_5G00348560 Rroxscaffold_7G00198070
rosa_rugosa Rorug01G0045600 Rorug01G0474300.1 Rorug07G0220000 Rorug07G0220100 Rorug07G0220200 Rorug07G0220300 Rorug07G0232800 Rorug07G0233000 Rorug07G0233100 Rorug07G0233100 Rorug07G0233200 Rorug07G0233300.1
rosa_samantha Rh1AG061100 Rh1BG052200 Rh1CG063300 Rh1CG063600 Rh1DG067700 Rh2AG027900 Rh2BG027400 Rh2CG028200 Rh2DG028000 Rh7AG369700 Rh7AG370100 Rh7AG371200 Rh7AG387800 Rh7BG366500 Rh7BG366800 Rh7BG367000 Rh7BG367600 Rh7CG388600 Rh7CG389000 Rh7CG389800 Rh7CG407400 Rh7DG377400 Rh7DG377500 Rh7DG377900 Rh7DG378600 Rh7DG378700 Rh7DG378800
rosa_wichuraiana Rw0G020970 Rw0G020980 Rw1G005200 Rw2G002210 Rw7G031830 Rw7G031860 Rw7G031900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 23
AccBSI CCGCTC 1 cut(s) 285
AccII CGCG 3 cut(s) 13, 117, 319
AciI CCGC 5 cut(s) 21, 86, 283, 314, 317
AclWI GGATC 1 cut(s) 457
AcoI YGGCCR 1 cut(s) 54
AcsI RAATTY 2 cut(s) 132, 174
AcuI CTGAAG 1 cut(s) 424
AfiI CCNNNNNNNGG 1 cut(s) 323
AgsI TTSAA 2 cut(s) 35, 434
AjnI CCWGG 2 cut(s) 105, 144
AluBI AGCT 2 cut(s) 103, 241
AluI AGCT 2 cut(s) 103, 241
Alw26I GTCTC 3 cut(s) 272, 307, 373
AlwI GGATC 1 cut(s) 457
Ama87I CYCGRG 1 cut(s) 355
AoxI GGCC 2 cut(s) 54, 336
ApeKI GCWGC 1 cut(s) 89
ApoI RAATTY 2 cut(s) 132, 174
AspLEI GCGC 2 cut(s) 15, 117
AvaI CYCGRG 1 cut(s) 355
AxyI CCTNAGG 1 cut(s) 417
BanI GGYRCC 1 cut(s) 23
BanII GRGCYC 1 cut(s) 262
BbvI GCAGC 1 cut(s) 101
BccI CCATC 2 cut(s) 58, 65
BciT130I CCWGG 2 cut(s) 107, 146
BcoDI GTCTC 3 cut(s) 272, 307, 373
BisI GCNGC 4 cut(s) 22, 87, 90, 317
BlpI GCTNAGC 1 cut(s) 99
BlsI GCNGC 4 cut(s) 23, 88, 91, 318
Bme1390I CCNGG 2 cut(s) 107, 146
BmeT110I CYCGRG 1 cut(s) 355
BmiI GGNNCC 1 cut(s) 25
BmrFI CCNGG 2 cut(s) 107, 146
BmsI GCATC 1 cut(s) 417
BplI GAGNNNNNCTC 6 cut(s) 218, 250, 269, 301, 397, 429
BpmI CTGGAG 1 cut(s) 89
Bpu1102I GCTNAGC 1 cut(s) 99
BpuEI CTTGAG 1 cut(s) 372
BsaI GGTCTC 1 cut(s) 272
BsaJI CCNNGG 2 cut(s) 93, 144
Bsc4I CCNNNNNNNGG 1 cut(s) 323
Bse118I RCCGGY 1 cut(s) 346
Bse1I ACTGG 1 cut(s) 299
Bse21I CCTNAGG 1 cut(s) 417
BseBI CCWGG 2 cut(s) 107, 146
BseDI CCNNGG 2 cut(s) 93, 144
BseLI CCNNNNNNNGG 1 cut(s) 323
BseMII CTCAG 7 cut(s) 113, 195, 230, 251, 267, 384, 408
BseNI ACTGG 1 cut(s) 299
BseXI GCAGC 1 cut(s) 101
Bsh1236I CGCG 3 cut(s) 13, 117, 319
BshFI GGCC 2 cut(s) 56, 338
BshNI GGYRCC 1 cut(s) 23
BsiHKCI CYCGRG 1 cut(s) 355
BsiSI CCGG 3 cut(s) 324, 335, 347
BslI CCNNNNNNNGG 1 cut(s) 323
BsmAI GTCTC 3 cut(s) 272, 307, 373
BsmI GAATGC 1 cut(s) 226
BsnI GGCC 2 cut(s) 56, 338
Bso31I GGTCTC 1 cut(s) 272
BsoBI CYCGRG 1 cut(s) 355
Bsp1286I GDGCHC 1 cut(s) 262
Bsp143I GATC 1 cut(s) 449
Bsp1720I GCTNAGC 1 cut(s) 99
BspACI CCGC 5 cut(s) 21, 86, 283, 314, 317
BspANI GGCC 2 cut(s) 56, 338
BspCNI CTCAG 7 cut(s) 112, 196, 229, 250, 268, 383, 409
BspFNI CGCG 3 cut(s) 13, 117, 319
BspLI GGNNCC 1 cut(s) 25
BspPI GGATC 1 cut(s) 457
BspQI GCTCTTC 1 cut(s) 267
BspT107I GGYRCC 1 cut(s) 23
BspTNI GGTCTC 1 cut(s) 272
BsrBI CCGCTC 1 cut(s) 285
BsrFI RCCGGY 1 cut(s) 346
BsrI ACTGG 1 cut(s) 299
BssAI RCCGGY 1 cut(s) 346
BssECI CCNNGG 2 cut(s) 93, 144
BssMI GATC 1 cut(s) 449
Bst2UI CCWGG 2 cut(s) 107, 146
Bst4CI ACNGT 1 cut(s) 39
Bst6I CTCTTC 2 cut(s) 267, 336
BstDEI CTNAG 7 cut(s) 99, 204, 216, 237, 276, 370, 417
BstFNI CGCG 3 cut(s) 13, 117, 319
BstHHI GCGC 2 cut(s) 15, 117
BstKTI GATC 1 cut(s) 452
BstMAI GTCTC 3 cut(s) 272, 307, 373
BstMBI GATC 1 cut(s) 449
BstMWI GCNNNNNNNGC 4 cut(s) 21, 83, 95, 221
BstNI CCWGG 2 cut(s) 107, 146
BstSCI CCNGG 2 cut(s) 105, 144
BstUI CGCG 3 cut(s) 13, 117, 319
BstV1I GCAGC 1 cut(s) 101
BstXI CCANNNNNNTGG 1 cut(s) 64
Bsu36I CCTNAGG 1 cut(s) 417
BsuRI GGCC 2 cut(s) 56, 338
BtsI GCAGTG 1 cut(s) 117
BtsIMutI CAGTG 1 cut(s) 117
CfoI GCGC 2 cut(s) 15, 117
Cfr10I RCCGGY 1 cut(s) 346
CviAII CATG 2 cut(s) 179, 212
CviJI RGCY 8 cut(s) 56, 92, 98, 103, 241, 260, 327, 338
CviKI_1 RGCY 8 cut(s) 56, 92, 98, 103, 241, 260, 327, 338
DdeI CTNAG 7 cut(s) 99, 204, 216, 237, 276, 370, 417
DpnI GATC 1 cut(s) 451
DpnII GATC 1 cut(s) 449
EaeI YGGCCR 1 cut(s) 54
Eam1104I CTCTTC 2 cut(s) 267, 336
EarI CTCTTC 2 cut(s) 267, 336
Eco24I GRGCYC 1 cut(s) 262
Eco31I GGTCTC 1 cut(s) 272
Eco57I CTGAAG 1 cut(s) 424
Eco81I CCTNAGG 1 cut(s) 417
Eco88I CYCGRG 1 cut(s) 355
EcoRII CCWGG 2 cut(s) 105, 144
EcoT38I GRGCYC 1 cut(s) 262
FaeI CATG 2 cut(s) 182, 215
FaiI YATR 2 cut(s) 180, 213
FatI CATG 2 cut(s) 178, 211
FauI CCCGC 2 cut(s) 290, 321
Fnu4HI GCNGC 4 cut(s) 22, 87, 90, 317
FriOI GRGCYC 1 cut(s) 262
Fsp4HI GCNGC 4 cut(s) 22, 87, 90, 317
GlaI GCGC 2 cut(s) 14, 116
GluI GCNGC 4 cut(s) 22, 87, 90, 317
GsuI CTGGAG 1 cut(s) 89
HaeIII GGCC 2 cut(s) 56, 338
HapII CCGG 3 cut(s) 324, 335, 347
HhaI GCGC 2 cut(s) 15, 117
Hin1II CATG 2 cut(s) 182, 215
Hin6I GCGC 2 cut(s) 13, 115
HinP1I GCGC 2 cut(s) 13, 115
HinfI GANTC 5 cut(s) 119, 154, 187, 208, 267
HpaII CCGG 3 cut(s) 324, 335, 347
Hpy188I TCNGA 8 cut(s) 163, 196, 219, 277, 289, 309, 373, 443
Hpy188III TCNNGA 2 cut(s) 61, 416
Hpy99I CGWCG 2 cut(s) 13, 43
HpyAV CCTTC 2 cut(s) 37, 41
HpyCH4III ACNGT 1 cut(s) 39
HpyCH4V TGCA 1 cut(s) 224
HpyF10VI GCNNNNNNNGC 4 cut(s) 21, 83, 95, 221
HpyF3I CTNAG 7 cut(s) 99, 204, 216, 237, 276, 370, 417
Hsp92II CATG 2 cut(s) 182, 215
HspAI GCGC 2 cut(s) 13, 115
Kzo9I GATC 1 cut(s) 449
LguI GCTCTTC 1 cut(s) 267
LmnI GCTCC 3 cut(s) 5, 108, 290
Lsp1109I GCAGC 1 cut(s) 101
LweI GCATC 1 cut(s) 417
MalI GATC 1 cut(s) 451
MbiI CCGCTC 1 cut(s) 285
MboI GATC 1 cut(s) 449
MboII GAAGA 2 cut(s) 254, 323
MhlI GDGCHC 1 cut(s) 262
MluCI AATT 5 cut(s) 132, 174, 271, 378, 444
MlyI GAGTC 2 cut(s) 113, 276
MmeI TCCRAC 2 cut(s) 225, 312
MnlI CCTC 7 cut(s) 88, 241, 349, 351, 396, 412, 459
MslI CAYNNNNRTG 1 cut(s) 62
MspA1I CMGCKG 1 cut(s) 241
MspI CCGG 3 cut(s) 324, 335, 347
MspR9I CCNGG 2 cut(s) 107, 146
Mva1269I GAATGC 1 cut(s) 226
MvaI CCWGG 2 cut(s) 107, 146
MvnI CGCG 3 cut(s) 13, 117, 319
MwoI GCNNNNNNNGC 4 cut(s) 21, 83, 95, 221
NdeII GATC 1 cut(s) 449
NlaIII CATG 2 cut(s) 182, 215
NlaIV GGNNCC 1 cut(s) 25
NmeAIII GCCGAG 1 cut(s) 118
PaeR7I CTCGAG 1 cut(s) 355
PciSI GCTCTTC 1 cut(s) 267
PcsI WCGNNNNNNNCGW 1 cut(s) 262
PctI GAATGC 1 cut(s) 226
PfeI GAWTC 3 cut(s) 154, 187, 208
PkrI GCNGC 4 cut(s) 23, 88, 91, 318
PleI GAGTC 2 cut(s) 113, 275
PpsI GAGTC 2 cut(s) 113, 275
Psp6I CCWGG 2 cut(s) 105, 144
PspGI CCWGG 2 cut(s) 105, 144
PspN4I GGNNCC 1 cut(s) 25
PspXI VCTCGAGB 1 cut(s) 355
PvuII CAGCTG 1 cut(s) 241
RseI CAYNNNNRTG 1 cut(s) 62
SapI GCTCTTC 1 cut(s) 267
SatI GCNGC 4 cut(s) 22, 87, 90, 317
Sau3AI GATC 1 cut(s) 449
SchI GAGTC 2 cut(s) 113, 276
ScrFI CCNGG 2 cut(s) 107, 146
SduI GDGCHC 1 cut(s) 262
SetI ASST 4 cut(s) 33, 105, 243, 470
SfaNI GCATC 1 cut(s) 417
Sfr274I CTCGAG 1 cut(s) 355
SlaI CTCGAG 1 cut(s) 355
SmiMI CAYNNNNRTG 1 cut(s) 62
SmlI CTYRAG 2 cut(s) 355, 387
SmoI CTYRAG 2 cut(s) 355, 387
Sse9I AATT 5 cut(s) 132, 174, 271, 378, 444
SsiI CCGC 5 cut(s) 21, 86, 283, 314, 317
StyD4I CCNGG 2 cut(s) 105, 144
TaaI ACNGT 1 cut(s) 39
TaqI TCGA 4 cut(s) 41, 60, 265, 356
TasI AATT 5 cut(s) 132, 174, 271, 378, 444
TauI GCSGC 3 cut(s) 24, 89, 319
TfiI GAWTC 3 cut(s) 154, 187, 208
TscAI CASTG 1 cut(s) 117
TseI GCWGC 1 cut(s) 89
TspDTI ATGAA 3 cut(s) 144, 167, 200
TspRI CASTG 1 cut(s) 117
XapI RAATTY 2 cut(s) 132, 174
XhoI CTCGAG 1 cut(s) 355
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.