repressing transcription factor binding
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 18 |
| Acc65I | GGTACC | 1 cut(s) | 512 |
| AccB1I | GGYRCC | 1 cut(s) | 512 |
| AciI | CCGC | 1 cut(s) | 405 |
| AclWI | GGATC | 1 cut(s) | 12 |
| AcsI | RAATTY | 1 cut(s) | 75 |
| AcuI | CTGAAG | 1 cut(s) | 256 |
| AfaI | GTAC | 1 cut(s) | 514 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 242, 561 |
| AgsI | TTSAA | 1 cut(s) | 115 |
| AluBI | AGCT | 3 cut(s) | 34, 61, 597 |
| AluI | AGCT | 3 cut(s) | 34, 61, 597 |
| AlwI | GGATC | 1 cut(s) | 12 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 532 |
| Ama87I | CYCGRG | 1 cut(s) | 29 |
| AoxI | GGCC | 1 cut(s) | 563 |
| ApeKI | GCWGC | 1 cut(s) | 407 |
| ApoI | RAATTY | 1 cut(s) | 75 |
| AseI | ATTAAT | 1 cut(s) | 347 |
| Asp718I | GGTACC | 1 cut(s) | 512 |
| AsuHPI | GGTGA | 2 cut(s) | 98, 604 |
| AvaI | CYCGRG | 1 cut(s) | 29 |
| BanI | GGYRCC | 1 cut(s) | 512 |
| BbvI | GCAGC | 1 cut(s) | 394 |
| BfaI | CTAG | 1 cut(s) | 414 |
| BisI | GCNGC | 1 cut(s) | 408 |
| BlsI | GCNGC | 1 cut(s) | 409 |
| BmeT110I | CYCGRG | 1 cut(s) | 29 |
| BmiI | GGNNCC | 2 cut(s) | 234, 514 |
| BmrI | ACTGGG | 1 cut(s) | 252 |
| BmsI | GCATC | 1 cut(s) | 154 |
| BmuI | ACTGGG | 1 cut(s) | 252 |
| BpmI | CTGGAG | 1 cut(s) | 534 |
| BsaJI | CCNNGG | 1 cut(s) | 307 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 242, 561 |
| Bse1I | ACTGG | 3 cut(s) | 80, 247, 358 |
| BseDI | CCNNGG | 1 cut(s) | 307 |
| BseGI | GGATG | 2 cut(s) | 25, 151 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 242, 561 |
| BseNI | ACTGG | 3 cut(s) | 80, 247, 358 |
| BseRI | GAGGAG | 1 cut(s) | 401 |
| BseXI | GCAGC | 1 cut(s) | 394 |
| BshFI | GGCC | 1 cut(s) | 565 |
| BshNI | GGYRCC | 1 cut(s) | 512 |
| BsiHKCI | CYCGRG | 1 cut(s) | 29 |
| BsiSI | CCGG | 1 cut(s) | 277 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 242, 561 |
| BsnI | GGCC | 1 cut(s) | 565 |
| BsoBI | CYCGRG | 1 cut(s) | 29 |
| Bsp143I | GATC | 1 cut(s) | 4 |
| BspACI | CCGC | 1 cut(s) | 405 |
| BspANI | GGCC | 1 cut(s) | 565 |
| BspHI | TCATGA | 1 cut(s) | 208 |
| BspLI | GGNNCC | 2 cut(s) | 234, 514 |
| BspPI | GGATC | 1 cut(s) | 12 |
| BspT107I | GGYRCC | 1 cut(s) | 512 |
| BsrI | ACTGG | 3 cut(s) | 80, 247, 358 |
| BssECI | CCNNGG | 1 cut(s) | 307 |
| BssMI | GATC | 1 cut(s) | 4 |
| BssT1I | CCWWGG | 1 cut(s) | 307 |
| Bst4CI | ACNGT | 4 cut(s) | 111, 322, 362, 534 |
| BstC8I | GCNNGC | 2 cut(s) | 182, 405 |
| BstF5I | GGATG | 2 cut(s) | 25, 151 |
| BstKTI | GATC | 1 cut(s) | 7 |
| BstMBI | GATC | 1 cut(s) | 4 |
| BstV1I | GCAGC | 1 cut(s) | 394 |
| BstX2I | RGATCY | 1 cut(s) | 4 |
| BstYI | RGATCY | 1 cut(s) | 4 |
| BsuRI | GGCC | 1 cut(s) | 565 |
| BtsCI | GGATG | 2 cut(s) | 25, 151 |
| BtsIMutI | CAGTG | 3 cut(s) | 87, 107, 351 |
| Cac8I | GCNNGC | 2 cut(s) | 182, 405 |
| CaiI | CAGNNNCTG | 1 cut(s) | 532 |
| CciI | TCATGA | 1 cut(s) | 208 |
| Csp6I | GTAC | 1 cut(s) | 513 |
| CviAII | CATG | 4 cut(s) | 137, 152, 209, 429 |
| CviQI | GTAC | 1 cut(s) | 513 |
| DpnI | GATC | 1 cut(s) | 6 |
| DpnII | GATC | 1 cut(s) | 4 |
| Eco130I | CCWWGG | 1 cut(s) | 307 |
| Eco57I | CTGAAG | 1 cut(s) | 256 |
| Eco88I | CYCGRG | 1 cut(s) | 29 |
| EcoT14I | CCWWGG | 1 cut(s) | 307 |
| ErhI | CCWWGG | 1 cut(s) | 307 |
| FaeI | CATG | 4 cut(s) | 140, 155, 212, 432 |
| FatI | CATG | 4 cut(s) | 136, 151, 208, 428 |
| FauI | CCCGC | 1 cut(s) | 412 |
| Fnu4HI | GCNGC | 1 cut(s) | 408 |
| FokI | GGATG | 2 cut(s) | 12, 158 |
| Fsp4HI | GCNGC | 1 cut(s) | 408 |
| FspBI | CTAG | 1 cut(s) | 414 |
| GluI | GCNGC | 1 cut(s) | 408 |
| GsuI | CTGGAG | 1 cut(s) | 534 |
| HaeIII | GGCC | 1 cut(s) | 565 |
| HapII | CCGG | 1 cut(s) | 277 |
| Hin1II | CATG | 4 cut(s) | 140, 155, 212, 432 |
| HpaII | CCGG | 1 cut(s) | 277 |
| HphI | GGTGA | 2 cut(s) | 98, 604 |
| Hpy188I | TCNGA | 2 cut(s) | 469, 528 |
| Hpy188III | TCNNGA | 4 cut(s) | 29, 197, 209, 485 |
| HpyAV | CCTTC | 1 cut(s) | 474 |
| HpyCH4III | ACNGT | 4 cut(s) | 111, 322, 362, 534 |
| Hsp92II | CATG | 4 cut(s) | 140, 155, 212, 432 |
| KpnI | GGTACC | 1 cut(s) | 516 |
| Kzo9I | GATC | 1 cut(s) | 4 |
| LmnI | GCTCC | 1 cut(s) | 553 |
| LpnPI | CCDG | 9 cut(s) | 93, 166, 228, 237, 290, 311, 339, 470, 564 |
| Lsp1109I | GCAGC | 1 cut(s) | 394 |
| LweI | GCATC | 1 cut(s) | 154 |
| MaeI | CTAG | 1 cut(s) | 414 |
| MaeIII | GTNAC | 2 cut(s) | 105, 282 |
| MalI | GATC | 1 cut(s) | 6 |
| MboI | GATC | 1 cut(s) | 4 |
| MboII | GAAGA | 3 cut(s) | 262, 272, 553 |
| MflI | RGATCY | 1 cut(s) | 4 |
| MluCI | AATT | 3 cut(s) | 75, 344, 377 |
| MnlI | CCTC | 5 cut(s) | 62, 246, 273, 379, 502 |
| MseI | TTAA | 5 cut(s) | 119, 228, 291, 347, 536 |
| MspA1I | CMGCKG | 1 cut(s) | 407 |
| MspI | CCGG | 1 cut(s) | 277 |
| NdeII | GATC | 1 cut(s) | 4 |
| NlaIII | CATG | 4 cut(s) | 140, 155, 212, 432 |
| NlaIV | GGNNCC | 2 cut(s) | 234, 514 |
| NmuCI | GTSAC | 2 cut(s) | 105, 282 |
| PagI | TCATGA | 1 cut(s) | 208 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 552 |
| PkrI | GCNGC | 1 cut(s) | 409 |
| PshBI | ATTAAT | 1 cut(s) | 347 |
| PsiI | TTATAA | 1 cut(s) | 18 |
| PspN4I | GGNNCC | 2 cut(s) | 234, 514 |
| PstNI | CAGNNNCTG | 1 cut(s) | 532 |
| PsuI | RGATCY | 1 cut(s) | 4 |
| RsaI | GTAC | 1 cut(s) | 514 |
| RsaNI | GTAC | 1 cut(s) | 513 |
| SaqAI | TTAA | 5 cut(s) | 119, 228, 291, 347, 536 |
| SatI | GCNGC | 1 cut(s) | 408 |
| Sau3AI | GATC | 1 cut(s) | 4 |
| SetI | ASST | 7 cut(s) | 36, 63, 99, 238, 284, 466, 599 |
| SfaNI | GCATC | 1 cut(s) | 154 |
| Sse9I | AATT | 3 cut(s) | 75, 344, 377 |
| SsiI | CCGC | 1 cut(s) | 405 |
| SspI | AATATT | 1 cut(s) | 190 |
| SspMI | CTAG | 1 cut(s) | 414 |
| StyI | CCWWGG | 1 cut(s) | 307 |
| TaaI | ACNGT | 4 cut(s) | 111, 322, 362, 534 |
| TaqI | TCGA | 1 cut(s) | 54 |
| TasI | AATT | 3 cut(s) | 75, 344, 377 |
| Tru1I | TTAA | 5 cut(s) | 119, 228, 291, 347, 536 |
| Tru9I | TTAA | 5 cut(s) | 119, 228, 291, 347, 536 |
| TscAI | CASTG | 3 cut(s) | 87, 114, 358 |
| TseFI | GTSAC | 2 cut(s) | 105, 282 |
| TseI | GCWGC | 1 cut(s) | 407 |
| Tsp45I | GTSAC | 2 cut(s) | 105, 282 |
| TspDTI | ATGAA | 5 cut(s) | 14, 162, 197, 429, 554 |
| TspGWI | ACGGA | 2 cut(s) | 158, 188 |
| TspRI | CASTG | 3 cut(s) | 87, 114, 358 |
| VspI | ATTAAT | 1 cut(s) | 347 |
| XapI | RAATTY | 1 cut(s) | 75 |
| XspI | CTAG | 1 cut(s) | 414 |