Rroxscaffold_7G00198070

repressing transcription factor binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000518
Physical Location & Seq
Reverse (-)
42837534 .. 42837782
249 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00198070.1

Sequence Viewer

Length: 249 bp
ATGAGCTTGATTTCGAAGGAAAAGGAGGATGACAGGGAGTTGGATGGGCCGGTCGGTGAGGGGTCGTGGCTGTACTCGGAGAGGAGAGATGATGATGATGGTCATGTGGAGATGATCGGTGCCGCCACAAGTGAGGATCTTCAAGGTGAGGCTGAAGTGCCACTTGTGGTGACTAAGCCTCGCTTTAGGAGACTTGGGTTGTGCGGGATTATGATGGTTGAGCTTGGTCACCGATTTACAAGCAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000118 GO:0000228 GO:0000785 GO:0000790 GO:0001085 GO:0001103 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0004407 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005813 GO:0005815 GO:0005856 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0008026 GO:0008094 GO:0008134 GO:0008150 GO:0008152 GO:0008270 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0015630 GO:0016043 GO:0016462 GO:0016569 GO:0016570 GO:0016575 GO:0016581 GO:0016787 GO:0016810 GO:0016811 GO:0016817 GO:0016818 GO:0016887 GO:0017053 GO:0017111 GO:0019213 GO:0019219 GO:0019222 GO:0019538 GO:0019899 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032392 GO:0032508 GO:0032991 GO:0033558 GO:0035601 GO:0036211 GO:0042623 GO:0042826 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0046872 GO:0046914 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070035 GO:0070491 GO:0070603 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0090545 GO:0090568 GO:0097159 GO:0098732 GO:0140096 GO:0140097 GO:1901363 GO:1901564 GO:1902494 GO:1903506 GO:1904949 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_1 Acetyltransf_10 Agenet Jas PHD

Protein Analysis

82

Amino Acids

9.18

Weight (kDa)

4.59

Isoelectric Point (pI)

39.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000518)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21681 FvH4_3g29252 FvH4_3g38950 FvH4_3g44310 FvH4_5g29400
malus_domestica MD03G1066300.v1.1
rosa_chinensis RchiOBHm_Chr2g0087341 RchiOBHm_Chr7g0225691 RchiOBHm_Chr7g0225721 RchiOBHm_Chr7g0225751 RchiOBHm_Chr7g0225781 RchiOBHm_Chr7g0225811 RchiOBHm_Chr7g0225821 RchiOBHm_Chr7g0225841 RchiOBHm_Chr7g0225941
rosa_laevigata RLG00000001777 RLG00000001779 RLG00000001787 RLG00000001796 RLG00000015858 RLG00000018399 RLG00000030202
rosa_multiflora Rmu_co7995100.1_g000001 Rmu_sc0003367.1_g000025 Rmu_sc0004082.1_g000018 Rmu_sc0006064.1_g000002 Rmu_sc0011806.1_g000001 Rmu_sc0014642.1_g000005 Rmu_sc0014767.1_g000003 Rmu_sc0015723.1_g000001 Rmu_sc0030795.1_g000001 Rmu_sc0033647.1_g000001
rosa_roxburghii Rroxscaffold_1G00028220 Rroxscaffold_2G00089180 Rroxscaffold_2G00125860 Rroxscaffold_3G00233350 Rroxscaffold_3G00239570 Rroxscaffold_4G00325690 Rroxscaffold_5G00348560 Rroxscaffold_7G00198070
rosa_rugosa Rorug01G0045600 Rorug01G0474300.1 Rorug07G0220000 Rorug07G0220100 Rorug07G0220200 Rorug07G0220300 Rorug07G0232800 Rorug07G0233000 Rorug07G0233100 Rorug07G0233100 Rorug07G0233200 Rorug07G0233300.1
rosa_samantha Rh1AG061100 Rh1BG052200 Rh1CG063300 Rh1CG063600 Rh1DG067700 Rh2AG027900 Rh2BG027400 Rh2CG028200 Rh2DG028000 Rh7AG369700 Rh7AG370100 Rh7AG371200 Rh7AG387800 Rh7BG366500 Rh7BG366800 Rh7BG367000 Rh7BG367600 Rh7CG388600 Rh7CG389000 Rh7CG389800 Rh7CG407400 Rh7DG377400 Rh7DG377500 Rh7DG377900 Rh7DG378600 Rh7DG378700 Rh7DG378800
rosa_wichuraiana Rw0G020970 Rw0G020980 Rw1G005200 Rw2G002210 Rw7G031830 Rw7G031860 Rw7G031900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 119
AciI CCGC 2 cut(s) 123, 204
AclWI GGATC 1 cut(s) 144
AcuI CTGAAG 1 cut(s) 174
AfaI GTAC 1 cut(s) 74
AgsI TTSAA 1 cut(s) 143
AluBI AGCT 2 cut(s) 6, 223
AluI AGCT 2 cut(s) 6, 223
Alw26I GTCTC 1 cut(s) 184
AlwI GGATC 1 cut(s) 144
AoxI GGCC 1 cut(s) 47
AspS9I GGNCC 1 cut(s) 47
AsuHPI GGTGA 4 cut(s) 68, 158, 181, 221
AsuII TTCGAA 1 cut(s) 14
BanI GGYRCC 1 cut(s) 119
BccI CCATC 3 cut(s) 38, 92, 208
BcoDI GTCTC 1 cut(s) 184
BfaI CTAG 1 cut(s) 247
BisI GCNGC 1 cut(s) 123
BlsI GCNGC 1 cut(s) 124
BmgT120I GGNCC 1 cut(s) 47
BmiI GGNNCC 1 cut(s) 121
Bpu14I TTCGAA 1 cut(s) 14
Bse118I RCCGGY 1 cut(s) 49
BseGI GGATG 2 cut(s) 34, 49
BseRI GAGGAG 1 cut(s) 97
Bsh1285I CGRYCG 1 cut(s) 54
BshFI GGCC 1 cut(s) 49
BshNI GGYRCC 1 cut(s) 119
BsiEI CGRYCG 1 cut(s) 54
BsiSI CCGG 1 cut(s) 50
BsmAI GTCTC 1 cut(s) 184
BsnI GGCC 1 cut(s) 49
Bsp119I TTCGAA 1 cut(s) 14
Bsp143I GATC 2 cut(s) 114, 136
BspACI CCGC 2 cut(s) 123, 204
BspANI GGCC 1 cut(s) 49
BspLI GGNNCC 1 cut(s) 121
BspPI GGATC 1 cut(s) 144
BspT104I TTCGAA 1 cut(s) 14
BspT107I GGYRCC 1 cut(s) 119
BsrFI RCCGGY 1 cut(s) 49
BssAI RCCGGY 1 cut(s) 49
BssMI GATC 2 cut(s) 114, 136
BstBI TTCGAA 1 cut(s) 14
BstDEI CTNAG 1 cut(s) 174
BstEII GGTNACC 1 cut(s) 227
BstF5I GGATG 2 cut(s) 34, 49
BstKTI GATC 2 cut(s) 117, 139
BstMAI GTCTC 1 cut(s) 184
BstMBI GATC 2 cut(s) 114, 136
BstMCI CGRYCG 1 cut(s) 54
BstPI GGTNACC 1 cut(s) 227
BstX2I RGATCY 1 cut(s) 136
BstYI RGATCY 1 cut(s) 136
BsuRI GGCC 1 cut(s) 49
BtsCI GGATG 2 cut(s) 34, 49
Cfr10I RCCGGY 1 cut(s) 49
Cfr13I GGNCC 1 cut(s) 47
Csp6I GTAC 1 cut(s) 73
CviAII CATG 1 cut(s) 104
CviJI RGCY 6 cut(s) 6, 49, 70, 152, 178, 223
CviKI_1 RGCY 6 cut(s) 6, 49, 70, 152, 178, 223
CviQI GTAC 1 cut(s) 73
DdeI CTNAG 1 cut(s) 174
DpnI GATC 2 cut(s) 116, 138
DpnII GATC 2 cut(s) 114, 136
Eco57I CTGAAG 1 cut(s) 174
Eco91I GGTNACC 1 cut(s) 227
EcoO65I GGTNACC 1 cut(s) 227
FaeI CATG 1 cut(s) 107
FaiI YATR 2 cut(s) 105, 212
FalI AAGNNNNNCTT 4 cut(s) 147, 179, 167, 199
FatI CATG 1 cut(s) 103
FauI CCCGC 1 cut(s) 197
Fnu4HI GCNGC 1 cut(s) 123
FokI GGATG 2 cut(s) 41, 56
Fsp4HI GCNGC 1 cut(s) 123
FspBI CTAG 1 cut(s) 247
GluI GCNGC 1 cut(s) 123
HaeIII GGCC 1 cut(s) 49
HapII CCGG 1 cut(s) 50
Hin1II CATG 1 cut(s) 107
HpaII CCGG 1 cut(s) 50
HphI GGTGA 4 cut(s) 68, 158, 181, 221
Hpy188I TCNGA 1 cut(s) 79
HpyAV CCTTC 1 cut(s) 10
HpyF3I CTNAG 1 cut(s) 174
Hsp92II CATG 1 cut(s) 107
Kzo9I GATC 2 cut(s) 114, 136
LpnPI CCDG 2 cut(s) 19, 63
MaeI CTAG 1 cut(s) 247
MaeIII GTNAC 2 cut(s) 169, 227
MalI GATC 2 cut(s) 116, 138
MboI GATC 2 cut(s) 114, 136
MboII GAAGA 1 cut(s) 131
MflI RGATCY 1 cut(s) 136
MmeI TCCRAC 1 cut(s) 21
MnlI CCTC 6 cut(s) 19, 52, 75, 127, 142, 189
MspI CCGG 1 cut(s) 50
NdeII GATC 2 cut(s) 114, 136
NlaIII CATG 1 cut(s) 107
NlaIV GGNNCC 1 cut(s) 121
NmuCI GTSAC 2 cut(s) 169, 227
NspV TTCGAA 1 cut(s) 14
PkrI GCNGC 1 cut(s) 124
PspEI GGTNACC 1 cut(s) 227
PspN4I GGNNCC 1 cut(s) 121
PspPI GGNCC 1 cut(s) 47
PsuI RGATCY 1 cut(s) 136
RsaI GTAC 1 cut(s) 74
RsaNI GTAC 1 cut(s) 73
SatI GCNGC 1 cut(s) 123
Sau3AI GATC 2 cut(s) 114, 136
Sau96I GGNCC 1 cut(s) 47
SetI ASST 3 cut(s) 8, 148, 225
SfuI TTCGAA 1 cut(s) 14
SsiI CCGC 2 cut(s) 123, 204
SspMI CTAG 1 cut(s) 247
TaqI TCGA 1 cut(s) 14
TatI WGTACW 1 cut(s) 72
TauI GCSGC 1 cut(s) 125
TseFI GTSAC 2 cut(s) 169, 227
Tsp45I GTSAC 2 cut(s) 169, 227
XspI CTAG 1 cut(s) 247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.