RLG00000001777

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000518
Physical Location & Seq
Reverse (-)
20623958 .. 20625124
1167 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001777

Sequence Viewer

Length: 333 bp
ATGGCTCTCTGGGTCTATCTTTCTACCAAAGCCCATATCATAGCAACCCACCCAATTGTTTCAATTCAATTAATTGAACCACCCCCAGCAGTGCCAAGCTCCACTCCGCTCTCAATGCCATCCATGAGTGTTTCGAGCCTTCCAAAGACCCATACACCAACAAAGACATTGCTGAGGACATTGTCTTCGACTTGGAATAACTCGAGAGGGTTTTACATTGTGGTTTTTGTGGGGAGAGATGATGATGATGGTCATGAGGAGATGATTGGTGCCACCACGGTGAGGATCAATAAGGGAGTGGCTGAAGTGCCACTGGTGGCGACTAGGCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

111

Amino Acids

11.96

Weight (kDa)

8.17

Isoelectric Point (pI)

53.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000518)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21681 FvH4_3g29252 FvH4_3g38950 FvH4_3g44310 FvH4_5g29400
malus_domestica MD03G1066300.v1.1
rosa_chinensis RchiOBHm_Chr2g0087341 RchiOBHm_Chr7g0225691 RchiOBHm_Chr7g0225721 RchiOBHm_Chr7g0225751 RchiOBHm_Chr7g0225781 RchiOBHm_Chr7g0225811 RchiOBHm_Chr7g0225821 RchiOBHm_Chr7g0225841 RchiOBHm_Chr7g0225941
rosa_laevigata RLG00000001777 RLG00000001779 RLG00000001787 RLG00000001796 RLG00000015858 RLG00000018399 RLG00000030202
rosa_multiflora Rmu_co7995100.1_g000001 Rmu_sc0003367.1_g000025 Rmu_sc0004082.1_g000018 Rmu_sc0006064.1_g000002 Rmu_sc0011806.1_g000001 Rmu_sc0014642.1_g000005 Rmu_sc0014767.1_g000003 Rmu_sc0015723.1_g000001 Rmu_sc0030795.1_g000001 Rmu_sc0033647.1_g000001
rosa_roxburghii Rroxscaffold_1G00028220 Rroxscaffold_2G00089180 Rroxscaffold_2G00125860 Rroxscaffold_3G00233350 Rroxscaffold_3G00239570 Rroxscaffold_4G00325690 Rroxscaffold_5G00348560 Rroxscaffold_7G00198070
rosa_rugosa Rorug01G0045600 Rorug01G0474300.1 Rorug07G0220000 Rorug07G0220100 Rorug07G0220200 Rorug07G0220300 Rorug07G0232800 Rorug07G0233000 Rorug07G0233100 Rorug07G0233100 Rorug07G0233200 Rorug07G0233300.1
rosa_samantha Rh1AG061100 Rh1BG052200 Rh1CG063300 Rh1CG063600 Rh1DG067700 Rh2AG027900 Rh2BG027400 Rh2CG028200 Rh2DG028000 Rh7AG369700 Rh7AG370100 Rh7AG371200 Rh7AG387800 Rh7BG366500 Rh7BG366800 Rh7BG367000 Rh7BG367600 Rh7CG388600 Rh7CG389000 Rh7CG389800 Rh7CG407400 Rh7DG377400 Rh7DG377500 Rh7DG377900 Rh7DG378600 Rh7DG378700 Rh7DG378800
rosa_wichuraiana Rw0G020970 Rw0G020980 Rw1G005200 Rw2G002210 Rw7G031830 Rw7G031860 Rw7G031900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 269
AccBSI CCGCTC 1 cut(s) 109
AciI CCGC 1 cut(s) 107
AclWI GGATC 1 cut(s) 293
AcuI CTGAAG 1 cut(s) 324
AfiI CCNNNNNNNGG 1 cut(s) 282
AgsI TTSAA 3 cut(s) 63, 68, 77
AleI CACNNNNGTG 1 cut(s) 278
AluBI AGCT 1 cut(s) 99
AluI AGCT 1 cut(s) 99
AlwI GGATC 1 cut(s) 293
Ama87I CYCGRG 1 cut(s) 202
ArsI GACNNNNNNTTYG 2 cut(s) 169, 201
AseI ATTAAT 1 cut(s) 71
AsuHPI GGTGA 1 cut(s) 292
AvaI CYCGRG 1 cut(s) 202
BanI GGYRCC 1 cut(s) 269
BbsI GAAGAC 1 cut(s) 177
BbvCI CCTCAGC 1 cut(s) 173
BccI CCATC 2 cut(s) 127, 242
BfaI CTAG 1 cut(s) 324
BmeT110I CYCGRG 1 cut(s) 202
BmiI GGNNCC 1 cut(s) 271
BpiI GAAGAC 1 cut(s) 177
Bpu10I CCTNAGC 1 cut(s) 173
BsaJI CCNNGG 1 cut(s) 276
Bsc4I CCNNNNNNNGG 1 cut(s) 282
Bse1I ACTGG 1 cut(s) 318
Bse3DI GCAATG 1 cut(s) 167
BseDI CCNNGG 1 cut(s) 276
BseGI GGATG 1 cut(s) 119
BseLI CCNNNNNNNGG 1 cut(s) 282
BseMI GCAATG 1 cut(s) 167
BseMII CTCAG 1 cut(s) 164
BseNI ACTGG 1 cut(s) 318
BseRI GAGGAG 1 cut(s) 272
BseYI CCCAGC 1 cut(s) 85
BshNI GGYRCC 1 cut(s) 269
BsiHKCI CYCGRG 1 cut(s) 202
BslI CCNNNNNNNGG 1 cut(s) 282
BsoBI CYCGRG 1 cut(s) 202
Bsp143I GATC 1 cut(s) 285
BspACI CCGC 1 cut(s) 107
BspCNI CTCAG 1 cut(s) 165
BspHI TCATGA 1 cut(s) 253
BspLI GGNNCC 1 cut(s) 271
BspPI GGATC 1 cut(s) 293
BspT107I GGYRCC 1 cut(s) 269
BsrBI CCGCTC 1 cut(s) 109
BsrDI GCAATG 1 cut(s) 167
BsrI ACTGG 1 cut(s) 318
BssECI CCNNGG 1 cut(s) 276
BssMI GATC 1 cut(s) 285
Bst4CI ACNGT 1 cut(s) 280
BstDEI CTNAG 1 cut(s) 173
BstDSI CCRYGG 1 cut(s) 276
BstF5I GGATG 1 cut(s) 119
BstKTI GATC 1 cut(s) 288
BstMBI GATC 1 cut(s) 285
BstMWI GCNNNNNNNGC 1 cut(s) 115
BstV2I GAAGAC 1 cut(s) 177
BtgI CCRYGG 1 cut(s) 276
BtsCI GGATG 1 cut(s) 119
BtsI GCAGTG 1 cut(s) 96
BtsIMutI CAGTG 2 cut(s) 96, 311
CciI TCATGA 1 cut(s) 253
CviAII CATG 2 cut(s) 124, 254
CviJI RGCY 6 cut(s) 5, 32, 99, 138, 302, 328
CviKI_1 RGCY 6 cut(s) 5, 32, 99, 138, 302, 328
DdeI CTNAG 1 cut(s) 173
DpnI GATC 1 cut(s) 287
DpnII GATC 1 cut(s) 285
Eco57I CTGAAG 1 cut(s) 324
Eco88I CYCGRG 1 cut(s) 202
FaeI CATG 2 cut(s) 127, 257
FaiI YATR 5 cut(s) 36, 41, 125, 153, 255
FatI CATG 2 cut(s) 123, 253
FokI GGATG 1 cut(s) 106
FspBI CTAG 1 cut(s) 324
GsaI CCCAGC 1 cut(s) 89
Hin1II CATG 2 cut(s) 127, 257
HphI GGTGA 1 cut(s) 292
Hpy188III TCNNGA 2 cut(s) 204, 254
HpyAV CCTTC 1 cut(s) 149
HpyCH4III ACNGT 1 cut(s) 280
HpyF10VI GCNNNNNNNGC 1 cut(s) 115
HpyF3I CTNAG 1 cut(s) 173
Hsp92II CATG 2 cut(s) 127, 257
Kzo9I GATC 1 cut(s) 285
LmnI GCTCC 1 cut(s) 104
LpnPI CCDG 2 cut(s) 99, 299
MaeI CTAG 1 cut(s) 324
MalI GATC 1 cut(s) 287
MbiI CCGCTC 1 cut(s) 109
MboI GATC 1 cut(s) 285
MboII GAAGA 1 cut(s) 177
MfeI CAATTG 1 cut(s) 54
MluCI AATT 4 cut(s) 54, 63, 68, 72
MnlI CCTC 4 cut(s) 168, 200, 250, 276
MseI TTAA 1 cut(s) 71
MslI CAYNNNNRTG 1 cut(s) 278
MunI CAATTG 1 cut(s) 54
MwoI GCNNNNNNNGC 1 cut(s) 115
NdeII GATC 1 cut(s) 285
NlaIII CATG 2 cut(s) 127, 257
NlaIV GGNNCC 1 cut(s) 271
OliI CACNNNNGTG 1 cut(s) 278
PaeR7I CTCGAG 1 cut(s) 202
PagI TCATGA 1 cut(s) 253
PflFI GACNNNGTC 1 cut(s) 181
PshBI ATTAAT 1 cut(s) 71
PspFI CCCAGC 1 cut(s) 85
PspN4I GGNNCC 1 cut(s) 271
PsyI GACNNNGTC 1 cut(s) 181
RseI CAYNNNNRTG 1 cut(s) 278
SaqAI TTAA 1 cut(s) 71
Sau3AI GATC 1 cut(s) 285
SetI ASST 1 cut(s) 101
Sfr274I CTCGAG 1 cut(s) 202
SlaI CTCGAG 1 cut(s) 202
SmiMI CAYNNNNRTG 1 cut(s) 278
SmlI CTYRAG 1 cut(s) 202
SmoI CTYRAG 1 cut(s) 202
Sse9I AATT 4 cut(s) 54, 63, 68, 72
SsiI CCGC 1 cut(s) 107
SspMI CTAG 1 cut(s) 324
TaaI ACNGT 1 cut(s) 280
TaqI TCGA 3 cut(s) 134, 188, 203
TasI AATT 4 cut(s) 54, 63, 68, 72
Tru1I TTAA 1 cut(s) 71
Tru9I TTAA 1 cut(s) 71
TscAI CASTG 2 cut(s) 96, 318
TspRI CASTG 2 cut(s) 96, 318
Tth111I GACNNNGTC 1 cut(s) 181
VspI ATTAAT 1 cut(s) 71
XhoI CTCGAG 1 cut(s) 202
XspI CTAG 1 cut(s) 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.