RLG00000001796

repressing transcription factor binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000518
Physical Location & Seq
Reverse (-)
20881381 .. 20883466
2086 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001796

Sequence Viewer

Length: 597 bp
ATGGGAATTGAATCTTATTACGGCACCAAACTCCACTCCGCTCTCAATGCCATCCACGAGTGTTTCGAGCCTTCCAAAGACCCTTACACCAACAGAGACATTGCTGAGGACATTGTCTTCGACTTCGAATCCGATTCCGAGTTGAATTTGAGAGGGTTTTACACTGTGGTTTTGGAGAGGAGAGATGATGATGATGGTCATGAGGAGATGATCGGTGCCGCCACGGTGAGGATCAATATGGGAGTGGCTGAAGTGCCACTCGTGGCGACTAGGCCTCAGTTTAGGAGACTTGGGATGTGCAGGGTTTTGATGAATGAGCTCGAAAATCGGCTCATGGAATTCGGCATTGAGAGGTTAGTCTTGCCTTCGGCACAAAGTGCACTCAATACATGGACTAGTAGTTCAATTGGGTTTTCAATGATGACTGAGGCTGAGATATCAGAACTCAGTGCTGATCATGACTTCTTGGATTTTAAGGACACTGTTATGTGTCATAAAGAATTGACTCCTAATAACTTGAAGAAAGTCAGCATCATGGCTTGTGAAGAGATGGGATGTAATAATGTAGGATCATGGGAAGCAACTGCCGTTGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000118 GO:0000228 GO:0000785 GO:0000790 GO:0001085 GO:0001103 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0004407 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005813 GO:0005815 GO:0005856 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0008026 GO:0008094 GO:0008134 GO:0008150 GO:0008152 GO:0008270 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0015630 GO:0016043 GO:0016462 GO:0016569 GO:0016570 GO:0016575 GO:0016581 GO:0016787 GO:0016810 GO:0016811 GO:0016817 GO:0016818 GO:0016887 GO:0017053 GO:0017111 GO:0019213 GO:0019219 GO:0019222 GO:0019538 GO:0019899 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032392 GO:0032508 GO:0032991 GO:0033558 GO:0035601 GO:0036211 GO:0042623 GO:0042826 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0046872 GO:0046914 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070035 GO:0070491 GO:0070603 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0090545 GO:0090568 GO:0097159 GO:0098732 GO:0140096 GO:0140097 GO:1901363 GO:1901564 GO:1902494 GO:1903506 GO:1904949 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_1 Acetyltransf_10 Agenet Jas PHD

Protein Analysis

199

Amino Acids

22.24

Weight (kDa)

4.57

Isoelectric Point (pI)

42.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IDM1_C PF23209 22 - 167 4.6e-37 Increased DNA methylation 1, C-terminal domain
Acetyltransf_1 PF00583 42 - 128 9e-07 Acetyltransferase (GNAT) family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000518)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21681 FvH4_3g29252 FvH4_3g38950 FvH4_3g44310 FvH4_5g29400
malus_domestica MD03G1066300.v1.1
rosa_chinensis RchiOBHm_Chr2g0087341 RchiOBHm_Chr7g0225691 RchiOBHm_Chr7g0225721 RchiOBHm_Chr7g0225751 RchiOBHm_Chr7g0225781 RchiOBHm_Chr7g0225811 RchiOBHm_Chr7g0225821 RchiOBHm_Chr7g0225841 RchiOBHm_Chr7g0225941
rosa_laevigata RLG00000001777 RLG00000001779 RLG00000001787 RLG00000001796 RLG00000015858 RLG00000018399 RLG00000030202
rosa_multiflora Rmu_co7995100.1_g000001 Rmu_sc0003367.1_g000025 Rmu_sc0004082.1_g000018 Rmu_sc0006064.1_g000002 Rmu_sc0011806.1_g000001 Rmu_sc0014642.1_g000005 Rmu_sc0014767.1_g000003 Rmu_sc0015723.1_g000001 Rmu_sc0030795.1_g000001 Rmu_sc0033647.1_g000001
rosa_roxburghii Rroxscaffold_1G00028220 Rroxscaffold_2G00089180 Rroxscaffold_2G00125860 Rroxscaffold_3G00233350 Rroxscaffold_3G00239570 Rroxscaffold_4G00325690 Rroxscaffold_5G00348560 Rroxscaffold_7G00198070
rosa_rugosa Rorug01G0045600 Rorug01G0474300.1 Rorug07G0220000 Rorug07G0220100 Rorug07G0220200 Rorug07G0220300 Rorug07G0232800 Rorug07G0233000 Rorug07G0233100 Rorug07G0233100 Rorug07G0233200 Rorug07G0233300.1
rosa_samantha Rh1AG061100 Rh1BG052200 Rh1CG063300 Rh1CG063600 Rh1DG067700 Rh2AG027900 Rh2BG027400 Rh2CG028200 Rh2DG028000 Rh7AG369700 Rh7AG370100 Rh7AG371200 Rh7AG387800 Rh7BG366500 Rh7BG366800 Rh7BG367000 Rh7BG367600 Rh7CG388600 Rh7CG389000 Rh7CG389800 Rh7CG407400 Rh7DG377400 Rh7DG377500 Rh7DG377900 Rh7DG378600 Rh7DG378700 Rh7DG378800
rosa_wichuraiana Rw0G020970 Rw0G020980 Rw1G005200 Rw2G002210 Rw7G031830 Rw7G031860 Rw7G031900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 23, 215
AccBSI CCGCTC 1 cut(s) 41
AciI CCGC 2 cut(s) 39, 219
AclWI GGATC 2 cut(s) 239, 577
AcsI RAATTY 2 cut(s) 145, 338
AcuI CTGAAG 1 cut(s) 270
AdeI CACNNNGTG 1 cut(s) 377
AfiI CCNNNNNNNGG 1 cut(s) 228
AgsI TTSAA 5 cut(s) 11, 145, 405, 417, 520
AhlI ACTAGT 1 cut(s) 395
AloI GAACNNNNNNTCC 2 cut(s) 385, 417
AluBI AGCT 1 cut(s) 319
AluI AGCT 1 cut(s) 319
Alw21I GWGCWC 2 cut(s) 321, 382
Alw26I GTCTC 2 cut(s) 90, 280
Alw44I GTGCAC 1 cut(s) 378
AlwI GGATC 2 cut(s) 239, 577
AoxI GGCC 1 cut(s) 272
ApaLI GTGCAC 1 cut(s) 378
ApoI RAATTY 2 cut(s) 145, 338
ArsI GACNNNNNNTTYG 2 cut(s) 101, 133
AsuHPI GGTGA 1 cut(s) 238
AsuII TTCGAA 1 cut(s) 126
BaeGI GKGCMC 1 cut(s) 382
BanI GGYRCC 2 cut(s) 23, 215
BanII GRGCYC 1 cut(s) 321
BauI CACGAG 2 cut(s) 56, 260
BbsI GAAGAC 1 cut(s) 109
Bbv12I GWGCWC 2 cut(s) 321, 382
BbvCI CCTCAGC 1 cut(s) 105
BccI CCATC 3 cut(s) 59, 188, 544
BceAI ACGGC 2 cut(s) 37, 572
BclI TGATCA 1 cut(s) 454
BcoDI GTCTC 2 cut(s) 90, 280
BcuI ACTAGT 1 cut(s) 395
BfaI CTAG 2 cut(s) 270, 396
BisI GCNGC 1 cut(s) 219
BlsI GCNGC 1 cut(s) 220
BmiI GGNNCC 2 cut(s) 25, 217
BmsI GCATC 1 cut(s) 540
BpiI GAAGAC 1 cut(s) 109
Bpu10I CCTNAGC 1 cut(s) 105
Bpu14I TTCGAA 1 cut(s) 126
BsaJI CCNNGG 1 cut(s) 222
Bsc4I CCNNNNNNNGG 1 cut(s) 228
Bse3DI GCAATG 1 cut(s) 99
BseDI CCNNGG 1 cut(s) 222
BseGI GGATG 3 cut(s) 51, 300, 560
BseLI CCNNNNNNNGG 1 cut(s) 228
BseMI GCAATG 1 cut(s) 99
BseMII CTCAG 5 cut(s) 96, 290, 417, 423, 460
BseRI GAGGAG 2 cut(s) 193, 218
BseSI GKGCMC 1 cut(s) 382
BsgI GTGCAG 1 cut(s) 319
BshFI GGCC 1 cut(s) 274
BshNI GGYRCC 2 cut(s) 23, 215
BsiHKAI GWGCWC 2 cut(s) 321, 382
BslI CCNNNNNNNGG 1 cut(s) 228
BsmAI GTCTC 2 cut(s) 90, 280
BsnI GGCC 1 cut(s) 274
Bsp119I TTCGAA 1 cut(s) 126
Bsp1286I GDGCHC 2 cut(s) 321, 382
Bsp143I GATC 4 cut(s) 210, 231, 454, 569
BspACI CCGC 2 cut(s) 39, 219
BspANI GGCC 1 cut(s) 274
BspCNI CTCAG 5 cut(s) 97, 289, 418, 424, 459
BspHI TCATGA 2 cut(s) 199, 457
BspLI GGNNCC 2 cut(s) 25, 217
BspPI GGATC 2 cut(s) 239, 577
BspT104I TTCGAA 1 cut(s) 126
BspT107I GGYRCC 2 cut(s) 23, 215
BsrBI CCGCTC 1 cut(s) 41
BsrDI GCAATG 1 cut(s) 99
BssECI CCNNGG 1 cut(s) 222
BssMI GATC 4 cut(s) 210, 231, 454, 569
BssSI CACGAG 2 cut(s) 56, 260
Bst2BI CACGAG 2 cut(s) 56, 260
Bst4CI ACNGT 3 cut(s) 166, 226, 484
Bst6I CTCTTC 1 cut(s) 540
BstAPI GCANNNNNTGC 1 cut(s) 377
BstBI TTCGAA 1 cut(s) 126
BstDEI CTNAG 5 cut(s) 105, 276, 426, 432, 446
BstDSI CCRYGG 1 cut(s) 222
BstF5I GGATG 3 cut(s) 51, 300, 560
BstKTI GATC 4 cut(s) 213, 234, 457, 572
BstMAI GTCTC 2 cut(s) 90, 280
BstMBI GATC 4 cut(s) 210, 231, 454, 569
BstMWI GCNNNNNNNGC 2 cut(s) 47, 377
BstSLI GKGCMC 1 cut(s) 382
BstV2I GAAGAC 1 cut(s) 109
BsuRI GGCC 1 cut(s) 274
BtgI CCRYGG 1 cut(s) 222
BtsCI GGATG 3 cut(s) 51, 300, 560
BtsIMutI CAGTG 3 cut(s) 162, 454, 480
CciI TCATGA 2 cut(s) 199, 457
CviAII CATG 6 cut(s) 200, 334, 390, 458, 535, 573
CviJI RGCY 7 cut(s) 70, 248, 274, 319, 331, 431, 539
CviKI_1 RGCY 7 cut(s) 70, 248, 274, 319, 331, 431, 539
DdeI CTNAG 5 cut(s) 105, 276, 426, 432, 446
DpnI GATC 4 cut(s) 212, 233, 456, 571
DpnII GATC 4 cut(s) 210, 231, 454, 569
DraIII CACNNNGTG 1 cut(s) 377
Eam1104I CTCTTC 1 cut(s) 540
EarI CTCTTC 1 cut(s) 540
Ecl136II GAGCTC 1 cut(s) 319
Eco147I AGGCCT 1 cut(s) 274
Eco24I GRGCYC 1 cut(s) 321
Eco32I GATATC 1 cut(s) 438
Eco53kI GAGCTC 1 cut(s) 319
Eco57I CTGAAG 1 cut(s) 270
EcoICRI GAGCTC 1 cut(s) 319
EcoRI GAATTC 1 cut(s) 338
EcoRV GATATC 1 cut(s) 438
EcoT38I GRGCYC 1 cut(s) 321
FaeI CATG 6 cut(s) 203, 337, 393, 461, 538, 576
FaiI YATR 9 cut(s) 201, 239, 335, 391, 459, 488, 495, 536, 574
FatI CATG 6 cut(s) 199, 333, 389, 457, 534, 572
FbaI TGATCA 1 cut(s) 454
Fnu4HI GCNGC 1 cut(s) 219
FokI GGATG 3 cut(s) 38, 307, 567
FriOI GRGCYC 1 cut(s) 321
Fsp4HI GCNGC 1 cut(s) 219
FspBI CTAG 2 cut(s) 270, 396
GluI GCNGC 1 cut(s) 219
HaeIII GGCC 1 cut(s) 274
Hin1II CATG 6 cut(s) 203, 337, 393, 461, 538, 576
HinfI GANTC 4 cut(s) 11, 128, 134, 505
HphI GGTGA 1 cut(s) 238
Hpy166II GTNNAC 1 cut(s) 380
Hpy188I TCNGA 3 cut(s) 133, 139, 442
Hpy188III TCNNGA 2 cut(s) 200, 458
Hpy8I GTNNAC 1 cut(s) 380
HpyAV CCTTC 2 cut(s) 81, 375
HpyCH4III ACNGT 3 cut(s) 166, 226, 484
HpyCH4V TGCA 2 cut(s) 300, 380
HpyF10VI GCNNNNNNNGC 2 cut(s) 47, 377
HpyF3I CTNAG 5 cut(s) 105, 276, 426, 432, 446
Hsp92II CATG 6 cut(s) 203, 337, 393, 461, 538, 576
Ksp22I TGATCA 1 cut(s) 454
Kzo9I GATC 4 cut(s) 210, 231, 454, 569
LpnPI CCDG 1 cut(s) 286
LweI GCATC 1 cut(s) 540
MaeI CTAG 2 cut(s) 270, 396
MalI GATC 4 cut(s) 212, 233, 456, 571
MbiI CCGCTC 1 cut(s) 41
MboI GATC 4 cut(s) 210, 231, 454, 569
MboII GAAGA 3 cut(s) 109, 532, 557
MfeI CAATTG 1 cut(s) 405
MhlI GDGCHC 2 cut(s) 321, 382
MluCI AATT 5 cut(s) 6, 145, 338, 405, 500
MlyI GAGTC 1 cut(s) 499
MnlI CCTC 8 cut(s) 100, 146, 171, 196, 222, 285, 345, 421
MseI TTAA 1 cut(s) 474
MslI CAYNNNNRTG 1 cut(s) 485
MunI CAATTG 1 cut(s) 405
MwoI GCNNNNNNNGC 2 cut(s) 47, 377
NdeII GATC 4 cut(s) 210, 231, 454, 569
NlaIII CATG 6 cut(s) 203, 337, 393, 461, 538, 576
NlaIV GGNNCC 2 cut(s) 25, 217
NspV TTCGAA 1 cut(s) 126
PagI TCATGA 2 cut(s) 199, 457
PceI AGGCCT 1 cut(s) 274
PcsI WCGNNNNNNNCGW 1 cut(s) 63
PfeI GAWTC 3 cut(s) 11, 128, 134
PflFI GACNNNGTC 1 cut(s) 113
PkrI GCNGC 1 cut(s) 220
PleI GAGTC 1 cut(s) 499
PpsI GAGTC 1 cut(s) 499
Psp124BI GAGCTC 1 cut(s) 321
PspN4I GGNNCC 2 cut(s) 25, 217
PsyI GACNNNGTC 1 cut(s) 113
RseI CAYNNNNRTG 1 cut(s) 485
SacI GAGCTC 1 cut(s) 321
SaqAI TTAA 1 cut(s) 474
SatI GCNGC 1 cut(s) 219
Sau3AI GATC 4 cut(s) 210, 231, 454, 569
SchI GAGTC 1 cut(s) 499
SduI GDGCHC 2 cut(s) 321, 382
SetI ASST 2 cut(s) 321, 356
SfaNI GCATC 1 cut(s) 540
SfuI TTCGAA 1 cut(s) 126
SmiMI CAYNNNNRTG 1 cut(s) 485
SpeI ACTAGT 1 cut(s) 395
Sse9I AATT 5 cut(s) 6, 145, 338, 405, 500
SseBI AGGCCT 1 cut(s) 274
SsiI CCGC 2 cut(s) 39, 219
SspMI CTAG 2 cut(s) 270, 396
SstI GAGCTC 1 cut(s) 321
StuI AGGCCT 1 cut(s) 274
TaaI ACNGT 3 cut(s) 166, 226, 484
TaqI TCGA 4 cut(s) 66, 120, 126, 321
TasI AATT 5 cut(s) 6, 145, 338, 405, 500
TauI GCSGC 1 cut(s) 221
TfiI GAWTC 3 cut(s) 11, 128, 134
Tru1I TTAA 1 cut(s) 474
Tru9I TTAA 1 cut(s) 474
TscAI CASTG 3 cut(s) 169, 454, 487
TspDTI ATGAA 1 cut(s) 326
TspRI CASTG 3 cut(s) 169, 454, 487
Tth111I GACNNNGTC 1 cut(s) 113
VneI GTGCAC 1 cut(s) 378
XapI RAATTY 2 cut(s) 145, 338
XspI CTAG 2 cut(s) 270, 396
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.