Rorug07G0220300

repressing transcription factor binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000518
Physical Location & Seq
Reverse (-)
19833339 .. 19835303
1965 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0220300.1

Sequence Viewer

Length: 564 bp
ATGGAATATTCAAGGGGGAGTGTTGGTCATAAAGCATGGCTTGCAGAGGTTCAATTTCTCGGTGCGGTAAATCACCCAAATCTGGTAAAGCTTCCAGGATATTGCTCTATAAATGGAGAAAGAGGGATTCAACGGCTATTGGTATATGAATATATGCCTAATAGAAGCTTAGAAGATCATCTTTTCAACAGGGCTTTGAACCCTCTTCCTTGGATCACGACGTTACAAATAATGTTTAGTGCTGCTCAAGGATTGGCTTATCTACATGAGGAACTAGAAGTCCAGTTACGTACATTGGTGGACACTGTCACTTCAGTAGCCGTCCATTATCTTGAATATATTCTGTGCTCTAAAAACTTTAGCTGTTGGGACCCTGTGGTTGTGTCACATGATGAGGACTTTGAGCCGAAGCTCTCAGACTTTGAGCTTGCTAGAGAAGGGCCAAAGGGTGACCGTACTCATGTACCGACAGCGGTAGTAGGGACTTATGGATTACCTTCTAACTGGCGCATGAGCGCCTCATCACCAATTCACTACCGTCTTCCAATCTCCCTTGGATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000118 GO:0000228 GO:0000785 GO:0000790 GO:0001085 GO:0001103 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0004407 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005813 GO:0005815 GO:0005856 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0008026 GO:0008094 GO:0008134 GO:0008150 GO:0008152 GO:0008270 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0015630 GO:0016043 GO:0016462 GO:0016569 GO:0016570 GO:0016575 GO:0016581 GO:0016787 GO:0016810 GO:0016811 GO:0016817 GO:0016818 GO:0016887 GO:0017053 GO:0017111 GO:0019213 GO:0019219 GO:0019222 GO:0019538 GO:0019899 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032392 GO:0032508 GO:0032991 GO:0033558 GO:0035601 GO:0036211 GO:0042623 GO:0042826 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0046872 GO:0046914 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070035 GO:0070491 GO:0070603 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0090545 GO:0090568 GO:0097159 GO:0098732 GO:0140096 GO:0140097 GO:1901363 GO:1901564 GO:1902494 GO:1903506 GO:1904949 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_1 Acetyltransf_10 Agenet Jas PHD

Protein Analysis

187

Amino Acids

21.18

Weight (kDa)

5.87

Isoelectric Point (pI)

35.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 10 - 91 6.8e-10 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 10 - 91 2.6e-06 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000518)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21681 FvH4_3g29252 FvH4_3g38950 FvH4_3g44310 FvH4_5g29400
malus_domestica MD03G1066300.v1.1
rosa_chinensis RchiOBHm_Chr2g0087341 RchiOBHm_Chr7g0225691 RchiOBHm_Chr7g0225721 RchiOBHm_Chr7g0225751 RchiOBHm_Chr7g0225781 RchiOBHm_Chr7g0225811 RchiOBHm_Chr7g0225821 RchiOBHm_Chr7g0225841 RchiOBHm_Chr7g0225941
rosa_laevigata RLG00000001777 RLG00000001779 RLG00000001787 RLG00000001796 RLG00000015858 RLG00000018399 RLG00000030202
rosa_multiflora Rmu_co7995100.1_g000001 Rmu_sc0003367.1_g000025 Rmu_sc0004082.1_g000018 Rmu_sc0006064.1_g000002 Rmu_sc0011806.1_g000001 Rmu_sc0014642.1_g000005 Rmu_sc0014767.1_g000003 Rmu_sc0015723.1_g000001 Rmu_sc0030795.1_g000001 Rmu_sc0033647.1_g000001
rosa_roxburghii Rroxscaffold_1G00028220 Rroxscaffold_2G00089180 Rroxscaffold_2G00125860 Rroxscaffold_3G00233350 Rroxscaffold_3G00239570 Rroxscaffold_4G00325690 Rroxscaffold_5G00348560 Rroxscaffold_7G00198070
rosa_rugosa Rorug01G0045600 Rorug01G0474300.1 Rorug07G0220000 Rorug07G0220100 Rorug07G0220200 Rorug07G0220300 Rorug07G0232800 Rorug07G0233000 Rorug07G0233100 Rorug07G0233100 Rorug07G0233200 Rorug07G0233300.1
rosa_samantha Rh1AG061100 Rh1BG052200 Rh1CG063300 Rh1CG063600 Rh1DG067700 Rh2AG027900 Rh2BG027400 Rh2CG028200 Rh2DG028000 Rh7AG369700 Rh7AG370100 Rh7AG371200 Rh7AG387800 Rh7BG366500 Rh7BG366800 Rh7BG367000 Rh7BG367600 Rh7CG388600 Rh7CG389000 Rh7CG389800 Rh7CG407400 Rh7DG377400 Rh7DG377500 Rh7DG377900 Rh7DG378600 Rh7DG378700 Rh7DG378800
rosa_wichuraiana Rw0G020970 Rw0G020980 Rw1G005200 Rw2G002210 Rw7G031830 Rw7G031860 Rw7G031900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 65, 473
AclWI GGATC 1 cut(s) 221
AcuI CTGAAG 1 cut(s) 297
AfaI GTAC 3 cut(s) 292, 457, 465
AfiI CCNNNNNNNGG 1 cut(s) 82
AgsI TTSAA 6 cut(s) 12, 53, 131, 187, 199, 335
AjnI CCWGG 1 cut(s) 94
AloI GAACNNNNNNTCC 2 cut(s) 264, 296
AluBI AGCT 5 cut(s) 91, 168, 363, 412, 427
AluI AGCT 5 cut(s) 91, 168, 363, 412, 427
Alw21I GWGCWC 1 cut(s) 350
AlwI GGATC 1 cut(s) 221
AoxI GGCC 1 cut(s) 440
ApeKI GCWGC 1 cut(s) 242
Asp700I GAANNNNTTC 1 cut(s) 339
AspLEI GCGC 2 cut(s) 510, 518
AspS9I GGNCC 2 cut(s) 370, 440
AsuHPI GGTGA 3 cut(s) 65, 461, 516
AvaII GGWCC 1 cut(s) 370
BaeI ACNNNNGTAYC 2 cut(s) 447, 480
BarI GAAGNNNNNNTAC 2 cut(s) 270, 302
BbsI GAAGAC 1 cut(s) 533
Bbv12I GWGCWC 1 cut(s) 350
BbvI GCAGC 1 cut(s) 229
BceAI ACGGC 2 cut(s) 149, 305
BciT130I CCWGG 1 cut(s) 96
BfaI CTAG 2 cut(s) 275, 432
BfoI RGCGCY 1 cut(s) 519
BisI GCNGC 1 cut(s) 243
BlsI GCNGC 1 cut(s) 244
Bme1390I CCNGG 1 cut(s) 96
Bme18I GGWCC 1 cut(s) 370
BmgT120I GGNCC 2 cut(s) 370, 440
BmiI GGNNCC 2 cut(s) 371, 372
BmrFI CCNGG 1 cut(s) 96
BpiI GAAGAC 1 cut(s) 533
BpuEI CTTGAG 1 cut(s) 231
BsaAI YACGTR 1 cut(s) 290
BsaJI CCNNGG 2 cut(s) 209, 553
BsaXI ACNNNNNCTCC 2 cut(s) 10, 40
Bsc4I CCNNNNNNNGG 1 cut(s) 82
Bse1I ACTGG 2 cut(s) 283, 509
BseBI CCWGG 1 cut(s) 96
BseDI CCNNGG 2 cut(s) 209, 553
BseLI CCNNNNNNNGG 1 cut(s) 82
BseMII CTCAG 1 cut(s) 429
BseNI ACTGG 2 cut(s) 283, 509
BseXI GCAGC 1 cut(s) 229
BshFI GGCC 1 cut(s) 442
BsiHKAI GWGCWC 1 cut(s) 350
BslFI GGGAC 2 cut(s) 383, 496
BslI CCNNNNNNNGG 1 cut(s) 82
BsmFI GGGAC 2 cut(s) 383, 496
BsnI GGCC 1 cut(s) 442
Bsp1286I GDGCHC 1 cut(s) 350
Bsp143I GATC 2 cut(s) 175, 213
BspACI CCGC 2 cut(s) 65, 473
BspANI GGCC 1 cut(s) 442
BspCNI CTCAG 1 cut(s) 428
BspLI GGNNCC 2 cut(s) 371, 372
BspPI GGATC 1 cut(s) 221
BsrI ACTGG 2 cut(s) 283, 509
BssECI CCNNGG 2 cut(s) 209, 553
BssMI GATC 2 cut(s) 175, 213
BssT1I CCWWGG 2 cut(s) 209, 553
Bst2UI CCWGG 1 cut(s) 96
Bst4CI ACNGT 3 cut(s) 307, 455, 539
Bst6I CTCTTC 1 cut(s) 210
BstAPI GCANNNNNTGC 1 cut(s) 41
BstBAI YACGTR 1 cut(s) 290
BstC8I GCNNGC 2 cut(s) 42, 429
BstDEI CTNAG 2 cut(s) 169, 415
BstEII GGTNACC 1 cut(s) 449
BstH2I RGCGCY 1 cut(s) 519
BstHHI GCGC 2 cut(s) 510, 518
BstKTI GATC 2 cut(s) 178, 216
BstMBI GATC 2 cut(s) 175, 213
BstMWI GCNNNNNNNGC 1 cut(s) 41
BstNI CCWGG 1 cut(s) 96
BstPI GGTNACC 1 cut(s) 449
BstSCI CCNGG 1 cut(s) 94
BstSNI TACGTA 1 cut(s) 290
BstV1I GCAGC 1 cut(s) 229
BstV2I GAAGAC 1 cut(s) 533
BsuRI GGCC 1 cut(s) 442
BtsIMutI CAGTG 1 cut(s) 303
Cac8I GCNNGC 2 cut(s) 42, 429
CfoI GCGC 2 cut(s) 510, 518
Cfr13I GGNCC 2 cut(s) 370, 440
Csp6I GTAC 3 cut(s) 291, 456, 464
CviAII CATG 5 cut(s) 36, 266, 389, 461, 511
CviQI GTAC 3 cut(s) 291, 456, 464
DdeI CTNAG 2 cut(s) 169, 415
DpnI GATC 2 cut(s) 177, 215
DpnII GATC 2 cut(s) 175, 213
Eam1104I CTCTTC 1 cut(s) 210
EarI CTCTTC 1 cut(s) 210
Eco105I TACGTA 1 cut(s) 290
Eco130I CCWWGG 2 cut(s) 209, 553
Eco47I GGWCC 1 cut(s) 370
Eco57I CTGAAG 1 cut(s) 297
Eco91I GGTNACC 1 cut(s) 449
EcoO109I RGGNCCY 1 cut(s) 370
EcoO65I GGTNACC 1 cut(s) 449
EcoRII CCWGG 1 cut(s) 94
EcoT14I CCWWGG 2 cut(s) 209, 553
ErhI CCWWGG 2 cut(s) 209, 553
FaeI CATG 5 cut(s) 39, 269, 392, 464, 514
FalI AAGNNNNNCTT 4 cut(s) 24, 56, 165, 197
FaqI GGGAC 2 cut(s) 383, 496
FatI CATG 5 cut(s) 35, 265, 388, 460, 510
Fnu4HI GCNGC 1 cut(s) 243
Fsp4HI GCNGC 1 cut(s) 243
FspBI CTAG 2 cut(s) 275, 432
GlaI GCGC 2 cut(s) 509, 517
GluI GCNGC 1 cut(s) 243
HaeII RGCGCY 1 cut(s) 519
HaeIII GGCC 1 cut(s) 442
HhaI GCGC 2 cut(s) 510, 518
Hin1II CATG 5 cut(s) 39, 269, 392, 464, 514
Hin6I GCGC 2 cut(s) 508, 516
HinP1I GCGC 2 cut(s) 508, 516
HindIII AAGCTT 2 cut(s) 89, 166
HinfI GANTC 1 cut(s) 127
HphI GGTGA 3 cut(s) 65, 461, 516
Hpy166II GTNNAC 1 cut(s) 301
Hpy188I TCNGA 1 cut(s) 418
Hpy188III TCNNGA 2 cut(s) 217, 332
Hpy8I GTNNAC 1 cut(s) 301
Hpy99I CGWCG 1 cut(s) 223
HpyAV CCTTC 2 cut(s) 431, 507
HpyCH4III ACNGT 3 cut(s) 307, 455, 539
HpyCH4IV ACGT 2 cut(s) 221, 289
HpyCH4V TGCA 1 cut(s) 44
HpyF10VI GCNNNNNNNGC 1 cut(s) 41
HpyF3I CTNAG 2 cut(s) 169, 415
HpySE526I ACGT 2 cut(s) 221, 289
Hsp92II CATG 5 cut(s) 39, 269, 392, 464, 514
HspAI GCGC 2 cut(s) 508, 516
KflI GGGWCCC 1 cut(s) 370
Kzo9I GATC 2 cut(s) 175, 213
LpnPI CCDG 7 cut(s) 68, 81, 108, 175, 296, 387, 490
Lsp1109I GCAGC 1 cut(s) 229
MaeI CTAG 2 cut(s) 275, 432
MaeII ACGT 2 cut(s) 221, 289
MaeIII GTNAC 5 cut(s) 222, 285, 307, 384, 449
MalI GATC 2 cut(s) 177, 215
MboI GATC 2 cut(s) 175, 213
MboII GAAGA 3 cut(s) 185, 197, 533
MhlI GDGCHC 1 cut(s) 350
MluCI AATT 2 cut(s) 53, 528
MnlI CCTC 6 cut(s) 40, 116, 213, 262, 388, 529
MroXI GAANNNNTTC 1 cut(s) 339
MspA1I CMGCKG 1 cut(s) 473
MspR9I CCNGG 1 cut(s) 96
MvaI CCWGG 1 cut(s) 96
MwoI GCNNNNNNNGC 1 cut(s) 41
NdeII GATC 2 cut(s) 175, 213
NlaIII CATG 5 cut(s) 39, 269, 392, 464, 514
NlaIV GGNNCC 2 cut(s) 371, 372
NmuCI GTSAC 3 cut(s) 307, 384, 449
PdmI GAANNNNTTC 1 cut(s) 339
PfeI GAWTC 1 cut(s) 127
PflFI GACNNNGTC 1 cut(s) 305
PfoI TCCNGGA 1 cut(s) 94
PkrI GCNGC 1 cut(s) 244
Ppu21I YACGTR 1 cut(s) 290
PpuMI RGGWCCY 1 cut(s) 370
Psp5II RGGWCCY 1 cut(s) 370
Psp6I CCWGG 1 cut(s) 94
PspEI GGTNACC 1 cut(s) 449
PspGI CCWGG 1 cut(s) 94
PspN4I GGNNCC 2 cut(s) 371, 372
PspPI GGNCC 2 cut(s) 370, 440
PspPPI RGGWCCY 1 cut(s) 370
PsyI GACNNNGTC 1 cut(s) 305
RsaI GTAC 3 cut(s) 292, 457, 465
RsaNI GTAC 3 cut(s) 291, 456, 464
SatI GCNGC 1 cut(s) 243
Sau3AI GATC 2 cut(s) 175, 213
Sau96I GGNCC 2 cut(s) 370, 440
ScrFI CCNGG 1 cut(s) 96
SduI GDGCHC 1 cut(s) 350
SetI ASST 9 cut(s) 51, 93, 170, 224, 292, 365, 414, 429, 499
SinI GGWCC 1 cut(s) 370
SmlI CTYRAG 1 cut(s) 246
SmoI CTYRAG 1 cut(s) 246
SnaBI TACGTA 1 cut(s) 290
Sse9I AATT 2 cut(s) 53, 528
SsiI CCGC 2 cut(s) 65, 473
SspI AATATT 1 cut(s) 8
SspMI CTAG 2 cut(s) 275, 432
StyD4I CCNGG 1 cut(s) 94
StyI CCWWGG 2 cut(s) 209, 553
TaaI ACNGT 3 cut(s) 307, 455, 539
TaiI ACGT 2 cut(s) 224, 292
TasI AATT 2 cut(s) 53, 528
TfiI GAWTC 1 cut(s) 127
TscAI CASTG 1 cut(s) 310
TseFI GTSAC 3 cut(s) 307, 384, 449
TseI GCWGC 1 cut(s) 242
Tsp45I GTSAC 3 cut(s) 307, 384, 449
TspDTI ATGAA 1 cut(s) 162
TspRI CASTG 1 cut(s) 310
Tth111I GACNNNGTC 1 cut(s) 305
VpaK11BI GGWCC 1 cut(s) 370
XmnI GAANNNNTTC 1 cut(s) 339
XspI CTAG 2 cut(s) 275, 432
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.