Rroxscaffold_1G00028220

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000518
Physical Location & Seq
Reverse (-)
35918298 .. 35921735
3438 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00028220.1

Sequence Viewer

Length: 477 bp
ATGAATCATGATTCTCACAATCTCATGAACTCATTATGGGTTTTCACTTTCCAGTCATCACTCTTGGTTTGCTTCTTCGAGTCCTCCTCAAGTCGTCAAGCCACTCAAGCAACAAAGCAAAAGACACTCTTGGTTCGATTTCGGGTTCTTCAAGCTCGAAAGAACAAGAAGCGGTGGTGGAATGTTTCGGCGATTCGATCCGGGTGGTGTCTAATGCGGAGCTGCGGGTTCTGCTCGAGGCTGGTGCGCACCGCTCGGCCTTTGGGAGATAGGCGGTGGAGTTGCGGTGGGCGCAGTGCGGGCGTAGTGGGTGTCGGGGCGGTGTGGCTGCGAGTGGTAGAGAAGATGAAGGACGGTCGTGGCGGTCCGGGTCCGAAATGGGAGTTGAAGGATCATCAAGGAGTGGGTGAAGTGCCACTTGTGGCGACTAGGCCTCGGTTTAGGAGACTTGGGTTGTGCAGGATCTTGATGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

158

Amino Acids

18.01

Weight (kDa)

11.44

Isoelectric Point (pI)

68.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000518)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21681 FvH4_3g29252 FvH4_3g38950 FvH4_3g44310 FvH4_5g29400
malus_domestica MD03G1066300.v1.1
rosa_chinensis RchiOBHm_Chr2g0087341 RchiOBHm_Chr7g0225691 RchiOBHm_Chr7g0225721 RchiOBHm_Chr7g0225751 RchiOBHm_Chr7g0225781 RchiOBHm_Chr7g0225811 RchiOBHm_Chr7g0225821 RchiOBHm_Chr7g0225841 RchiOBHm_Chr7g0225941
rosa_laevigata RLG00000001777 RLG00000001779 RLG00000001787 RLG00000001796 RLG00000015858 RLG00000018399 RLG00000030202
rosa_multiflora Rmu_co7995100.1_g000001 Rmu_sc0003367.1_g000025 Rmu_sc0004082.1_g000018 Rmu_sc0006064.1_g000002 Rmu_sc0011806.1_g000001 Rmu_sc0014642.1_g000005 Rmu_sc0014767.1_g000003 Rmu_sc0015723.1_g000001 Rmu_sc0030795.1_g000001 Rmu_sc0033647.1_g000001
rosa_roxburghii Rroxscaffold_1G00028220 Rroxscaffold_2G00089180 Rroxscaffold_2G00125860 Rroxscaffold_3G00233350 Rroxscaffold_3G00239570 Rroxscaffold_4G00325690 Rroxscaffold_5G00348560 Rroxscaffold_7G00198070
rosa_rugosa Rorug01G0045600 Rorug01G0474300.1 Rorug07G0220000 Rorug07G0220100 Rorug07G0220200 Rorug07G0220300 Rorug07G0232800 Rorug07G0233000 Rorug07G0233100 Rorug07G0233100 Rorug07G0233200 Rorug07G0233300.1
rosa_samantha Rh1AG061100 Rh1BG052200 Rh1CG063300 Rh1CG063600 Rh1DG067700 Rh2AG027900 Rh2BG027400 Rh2CG028200 Rh2DG028000 Rh7AG369700 Rh7AG370100 Rh7AG371200 Rh7AG387800 Rh7BG366500 Rh7BG366800 Rh7BG367000 Rh7BG367600 Rh7CG388600 Rh7CG389000 Rh7CG389800 Rh7CG407400 Rh7DG377400 Rh7DG377500 Rh7DG377900 Rh7DG378600 Rh7DG378700 Rh7DG378800
rosa_wichuraiana Rw0G020970 Rw0G020980 Rw1G005200 Rw2G002210 Rw7G031830 Rw7G031860 Rw7G031900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 248
AccBSI CCGCTC 1 cut(s) 254
AciI CCGC 9 cut(s) 172, 217, 225, 252, 274, 285, 299, 320, 363
AclWI GGATC 3 cut(s) 192, 399, 470
AgsI TTSAA 2 cut(s) 152, 388
AluBI AGCT 2 cut(s) 155, 222
AluI AGCT 2 cut(s) 155, 222
Alw26I GTCTC 1 cut(s) 439
AlwI GGATC 3 cut(s) 192, 399, 470
Ama87I CYCGRG 1 cut(s) 235
AoxI GGCC 2 cut(s) 257, 431
ApeKI GCWGC 2 cut(s) 222, 328
AspLEI GCGC 2 cut(s) 249, 294
AspS9I GGNCC 2 cut(s) 365, 371
AsuC2I CCSGG 2 cut(s) 202, 369
AsuHPI GGTGA 1 cut(s) 419
AvaI CYCGRG 1 cut(s) 235
AvaII GGWCC 2 cut(s) 365, 371
BbvI GCAGC 2 cut(s) 209, 315
BccI CCATC 1 cut(s) 463
BcgI CGANNNNNNTGC 2 cut(s) 226, 260
BcnI CCSGG 2 cut(s) 202, 369
BcoDI GTCTC 1 cut(s) 439
BfaI CTAG 1 cut(s) 429
BisI GCNGC 2 cut(s) 223, 329
BlsI GCNGC 2 cut(s) 224, 330
Bme1390I CCNGG 2 cut(s) 202, 369
Bme18I GGWCC 2 cut(s) 365, 371
BmeT110I CYCGRG 1 cut(s) 235
BmgT120I GGNCC 2 cut(s) 365, 371
BmiI GGNNCC 1 cut(s) 372
BmrFI CCNGG 2 cut(s) 202, 369
BplI GAGNNNNNCTC 2 cut(s) 71, 103
BpuEI CTTGAG 2 cut(s) 73, 90
BpuMI CCSGG 2 cut(s) 202, 369
BsaJI CCNNGG 1 cut(s) 434
BsaXI ACNNNNNCTCC 2 cut(s) 271, 301
Bse1I ACTGG 1 cut(s) 52
BseDI CCNNGG 1 cut(s) 434
BseNI ACTGG 1 cut(s) 52
BseRI GAGGAG 1 cut(s) 76
BseXI GCAGC 2 cut(s) 209, 315
Bsh1285I CGRYCG 1 cut(s) 358
BshFI GGCC 2 cut(s) 259, 433
BsiEI CGRYCG 1 cut(s) 358
BsiHKCI CYCGRG 1 cut(s) 235
BsiSI CCGG 2 cut(s) 201, 368
BsmAI GTCTC 1 cut(s) 439
BsnI GGCC 2 cut(s) 259, 433
BsoBI CYCGRG 1 cut(s) 235
Bsp143I GATC 3 cut(s) 197, 391, 462
BspACI CCGC 9 cut(s) 172, 217, 225, 252, 274, 285, 299, 320, 363
BspANI GGCC 2 cut(s) 259, 433
BspHI TCATGA 2 cut(s) 7, 24
BspLI GGNNCC 1 cut(s) 372
BspPI GGATC 3 cut(s) 192, 399, 470
BsrBI CCGCTC 1 cut(s) 254
BsrI ACTGG 1 cut(s) 52
BssECI CCNNGG 1 cut(s) 434
BssMI GATC 3 cut(s) 197, 391, 462
Bst4CI ACNGT 1 cut(s) 356
BstC8I GCNNGC 1 cut(s) 301
BstHHI GCGC 2 cut(s) 249, 294
BstKTI GATC 3 cut(s) 200, 394, 465
BstMAI GTCTC 1 cut(s) 439
BstMBI GATC 3 cut(s) 197, 391, 462
BstMCI CGRYCG 1 cut(s) 358
BstMWI GCNNNNNNNGC 4 cut(s) 107, 231, 291, 300
BstSCI CCNGG 2 cut(s) 200, 367
BstV1I GCAGC 2 cut(s) 209, 315
BstX2I RGATCY 1 cut(s) 462
BstYI RGATCY 1 cut(s) 462
BsuRI GGCC 2 cut(s) 259, 433
BtsI GCAGTG 1 cut(s) 301
BtsIMutI CAGTG 1 cut(s) 301
Cac8I GCNNGC 1 cut(s) 301
CciI TCATGA 2 cut(s) 7, 24
CfoI GCGC 2 cut(s) 249, 294
Cfr13I GGNCC 2 cut(s) 365, 371
CpoI CGGWCCG 1 cut(s) 365
CspI CGGWCCG 1 cut(s) 365
CviAII CATG 2 cut(s) 8, 25
CviJI RGCY 7 cut(s) 101, 155, 222, 241, 259, 328, 433
CviKI_1 RGCY 7 cut(s) 101, 155, 222, 241, 259, 328, 433
DpnI GATC 3 cut(s) 199, 393, 464
DpnII GATC 3 cut(s) 197, 391, 462
Eco147I AGGCCT 1 cut(s) 433
Eco47I GGWCC 2 cut(s) 365, 371
Eco88I CYCGRG 1 cut(s) 235
FaeI CATG 2 cut(s) 11, 28
FaiI YATR 3 cut(s) 9, 26, 37
FalI AAGNNNNNCTT 4 cut(s) 113, 145, 402, 434
FatI CATG 2 cut(s) 7, 24
FauI CCCGC 2 cut(s) 218, 292
Fnu4HI GCNGC 2 cut(s) 223, 329
Fsp4HI GCNGC 2 cut(s) 223, 329
FspAI RTGCGCAY 1 cut(s) 248
FspBI CTAG 1 cut(s) 429
FspI TGCGCA 1 cut(s) 248
GlaI GCGC 2 cut(s) 248, 293
GluI GCNGC 2 cut(s) 223, 329
HaeIII GGCC 2 cut(s) 259, 433
HapII CCGG 2 cut(s) 201, 368
HhaI GCGC 2 cut(s) 249, 294
Hin1II CATG 2 cut(s) 11, 28
Hin6I GCGC 2 cut(s) 247, 292
HinP1I GCGC 2 cut(s) 247, 292
HinfI GANTC 4 cut(s) 4, 11, 80, 193
HpaII CCGG 2 cut(s) 201, 368
HphI GGTGA 1 cut(s) 419
Hpy188I TCNGA 1 cut(s) 375
Hpy188III TCNNGA 3 cut(s) 8, 25, 466
HpyAV CCTTC 2 cut(s) 343, 382
HpyCH4III ACNGT 1 cut(s) 356
HpyCH4V TGCA 1 cut(s) 459
HpyF10VI GCNNNNNNNGC 4 cut(s) 107, 231, 291, 300
Hsp92II CATG 2 cut(s) 11, 28
HspAI GCGC 2 cut(s) 247, 292
Kzo9I GATC 3 cut(s) 197, 391, 462
LmnI GCTCC 1 cut(s) 219
LpnPI CCDG 5 cut(s) 65, 214, 227, 381, 445
Lsp1109I GCAGC 2 cut(s) 209, 315
MaeI CTAG 1 cut(s) 429
MalI GATC 3 cut(s) 199, 393, 464
MbiI CCGCTC 1 cut(s) 254
MboI GATC 3 cut(s) 197, 391, 462
MboII GAAGA 3 cut(s) 67, 140, 355
MflI RGATCY 1 cut(s) 462
MlyI GAGTC 1 cut(s) 89
MnlI CCTC 4 cut(s) 94, 97, 231, 444
MspI CCGG 2 cut(s) 201, 368
MspR9I CCNGG 2 cut(s) 202, 369
MwoI GCNNNNNNNGC 4 cut(s) 107, 231, 291, 300
NciI CCSGG 2 cut(s) 202, 369
NdeII GATC 3 cut(s) 197, 391, 462
NlaIII CATG 2 cut(s) 11, 28
NlaIV GGNNCC 1 cut(s) 372
NmeAIII GCCGAG 1 cut(s) 235
NsbI TGCGCA 1 cut(s) 248
PaeR7I CTCGAG 1 cut(s) 235
PagI TCATGA 2 cut(s) 7, 24
PceI AGGCCT 1 cut(s) 433
PfeI GAWTC 3 cut(s) 4, 11, 193
PkrI GCNGC 2 cut(s) 224, 330
PleI GAGTC 1 cut(s) 88
PpsI GAGTC 1 cut(s) 88
PspN4I GGNNCC 1 cut(s) 372
PspPI GGNCC 2 cut(s) 365, 371
PspXI VCTCGAGB 1 cut(s) 235
PsuI RGATCY 1 cut(s) 462
Rsr2I CGGWCCG 1 cut(s) 365
RsrII CGGWCCG 1 cut(s) 365
SatI GCNGC 2 cut(s) 223, 329
Sau3AI GATC 3 cut(s) 197, 391, 462
Sau96I GGNCC 2 cut(s) 365, 371
SchI GAGTC 1 cut(s) 89
ScrFI CCNGG 2 cut(s) 202, 369
SetI ASST 2 cut(s) 157, 224
Sfr274I CTCGAG 1 cut(s) 235
SinI GGWCC 2 cut(s) 365, 371
SlaI CTCGAG 1 cut(s) 235
SmlI CTYRAG 3 cut(s) 88, 105, 235
SmoI CTYRAG 3 cut(s) 88, 105, 235
SseBI AGGCCT 1 cut(s) 433
SsiI CCGC 9 cut(s) 172, 217, 225, 252, 274, 285, 299, 320, 363
SspMI CTAG 1 cut(s) 429
StuI AGGCCT 1 cut(s) 433
StyD4I CCNGG 2 cut(s) 200, 367
TaaI ACNGT 1 cut(s) 356
TaqI TCGA 5 cut(s) 78, 136, 157, 196, 236
TfiI GAWTC 3 cut(s) 4, 11, 193
TscAI CASTG 1 cut(s) 301
TseI GCWGC 2 cut(s) 222, 328
TspDTI ATGAA 3 cut(s) 17, 41, 362
TspRI CASTG 1 cut(s) 301
VpaK11BI GGWCC 2 cut(s) 365, 371
XhoI CTCGAG 1 cut(s) 235
XspI CTAG 1 cut(s) 429
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.