Rh7BG366500

repressing transcription factor binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000518
Physical Location & Seq
Forward (+)
39168264 .. 39172839
4576 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG366500.1

Sequence Viewer

Length: 645 bp
ATGAAGCGGAAGCGGGCCTCTGCTATGGCTTCGTCATCGTCGTCTACCGTGAAACCCTCACGCTCACGCTTCCCTGAAGAAGAATCAGTCCGGTGTAGGGAGAGCGAAACGGCGTCGTCAAACAGAACCCGACCCCAAATCCAATCCAGATCAAGAAAAGGATCGAAAACAAGAAACATCAATGATGTCTTAAAAGATGAAAGATCCAAGATTTCTGGGATCAACCGGATTTTGGGGACACCCATTCCCGTGAGCAATAACCTGACATGGAGGCTTTTGAAATCTCACATGCGAATTGAATCTTATTACGGCACCAAGCTCCACTCCGCTCTCAATGCCATCCACCAGTGTTTCGAGCCTTCCAAAGACCCCTACACCAACAGAGACATTGCTGAGGACATTGTCTTCGACTTGGAATCCGATTCCGAGTTGAATTTGAGAGGGTTTTACACTGTGGTTTTGGAGAGGAGAGATGATGTTAATGGTCATGAGGAGATGATCGGTGCCGCCACGGTGAGGATCAATAAGGGAGTGGCTGAAGTGCCACTCGTGGCGACTAGGCCTCAGTTTAGGAGACTTGGGATGTGCAGGATTTTGATGAATGAGCTCGAAAATCGGCTCATGGAATTCGGCATTGAGAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000118 GO:0000228 GO:0000785 GO:0000790 GO:0001085 GO:0001103 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0004407 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005813 GO:0005815 GO:0005856 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0008026 GO:0008094 GO:0008134 GO:0008150 GO:0008152 GO:0008270 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0015630 GO:0016043 GO:0016462 GO:0016569 GO:0016570 GO:0016575 GO:0016581 GO:0016787 GO:0016810 GO:0016811 GO:0016817 GO:0016818 GO:0016887 GO:0017053 GO:0017111 GO:0019213 GO:0019219 GO:0019222 GO:0019538 GO:0019899 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032392 GO:0032508 GO:0032991 GO:0033558 GO:0035601 GO:0036211 GO:0042623 GO:0042826 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0046872 GO:0046914 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070035 GO:0070491 GO:0070603 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0090545 GO:0090568 GO:0097159 GO:0098732 GO:0140096 GO:0140097 GO:1901363 GO:1901564 GO:1902494 GO:1903506 GO:1904949 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_1 Acetyltransf_10 Agenet Jas PHD

Protein Analysis

214

Amino Acids

24.48

Weight (kDa)

9.74

Isoelectric Point (pI)

60.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IDM1_C PF23209 118 - 214 5.6e-22 Increased DNA methylation 1, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000518)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21681 FvH4_3g29252 FvH4_3g38950 FvH4_3g44310 FvH4_5g29400
malus_domestica MD03G1066300.v1.1
rosa_chinensis RchiOBHm_Chr2g0087341 RchiOBHm_Chr7g0225691 RchiOBHm_Chr7g0225721 RchiOBHm_Chr7g0225751 RchiOBHm_Chr7g0225781 RchiOBHm_Chr7g0225811 RchiOBHm_Chr7g0225821 RchiOBHm_Chr7g0225841 RchiOBHm_Chr7g0225941
rosa_laevigata RLG00000001777 RLG00000001779 RLG00000001787 RLG00000001796 RLG00000015858 RLG00000018399 RLG00000030202
rosa_multiflora Rmu_co7995100.1_g000001 Rmu_sc0003367.1_g000025 Rmu_sc0004082.1_g000018 Rmu_sc0006064.1_g000002 Rmu_sc0011806.1_g000001 Rmu_sc0014642.1_g000005 Rmu_sc0014767.1_g000003 Rmu_sc0015723.1_g000001 Rmu_sc0030795.1_g000001 Rmu_sc0033647.1_g000001
rosa_roxburghii Rroxscaffold_1G00028220 Rroxscaffold_2G00089180 Rroxscaffold_2G00125860 Rroxscaffold_3G00233350 Rroxscaffold_3G00239570 Rroxscaffold_4G00325690 Rroxscaffold_5G00348560 Rroxscaffold_7G00198070
rosa_rugosa Rorug01G0045600 Rorug01G0474300.1 Rorug07G0220000 Rorug07G0220100 Rorug07G0220200 Rorug07G0220300 Rorug07G0232800 Rorug07G0233000 Rorug07G0233100 Rorug07G0233100 Rorug07G0233200 Rorug07G0233300.1
rosa_samantha Rh1AG061100 Rh1BG052200 Rh1CG063300 Rh1CG063600 Rh1DG067700 Rh2AG027900 Rh2BG027400 Rh2CG028200 Rh2DG028000 Rh7AG369700 Rh7AG370100 Rh7AG371200 Rh7AG387800 Rh7BG366500 Rh7BG366800 Rh7BG367000 Rh7BG367600 Rh7CG388600 Rh7CG389000 Rh7CG389800 Rh7CG407400 Rh7DG377400 Rh7DG377500 Rh7DG377900 Rh7DG378600 Rh7DG378700 Rh7DG378800
rosa_wichuraiana Rw0G020970 Rw0G020980 Rw1G005200 Rw2G002210 Rw7G031830 Rw7G031860 Rw7G031900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 311, 503
AccBSI CCGCTC 1 cut(s) 329
AccI GTMKAC 1 cut(s) 44
AciI CCGC 4 cut(s) 7, 13, 327, 507
AclWI GGATC 4 cut(s) 169, 198, 227, 527
AcsI RAATTY 2 cut(s) 433, 626
AcuI CTGAAG 2 cut(s) 96, 558
AcyI GRCGYC 1 cut(s) 113
AfiI CCNNNNNNNGG 3 cut(s) 97, 232, 516
AgsI TTSAA 3 cut(s) 280, 299, 433
AluBI AGCT 2 cut(s) 319, 607
AluI AGCT 2 cut(s) 319, 607
Alw21I GWGCWC 1 cut(s) 609
Alw26I GTCTC 2 cut(s) 378, 568
AlwI GGATC 4 cut(s) 169, 198, 227, 527
AoxI GGCC 2 cut(s) 15, 560
ApoI RAATTY 2 cut(s) 433, 626
ArsI GACNNNNNNTTYG 2 cut(s) 389, 421
AspS9I GGNCC 1 cut(s) 15
AsuHPI GGTGA 1 cut(s) 526
BanI GGYRCC 2 cut(s) 311, 503
BanII GRGCYC 1 cut(s) 609
BauI CACGAG 1 cut(s) 548
BbsI GAAGAC 1 cut(s) 397
Bbv12I GWGCWC 1 cut(s) 609
BbvCI CCTCAGC 1 cut(s) 393
BccI CCATC 1 cut(s) 347
BceAI ACGGC 2 cut(s) 126, 325
BcoDI GTCTC 2 cut(s) 378, 568
BfaI CTAG 1 cut(s) 558
BisI GCNGC 1 cut(s) 507
BlsI GCNGC 1 cut(s) 508
BmgT120I GGNCC 1 cut(s) 15
BmiI GGNNCC 2 cut(s) 313, 505
BpiI GAAGAC 1 cut(s) 397
Bpu10I CCTNAGC 1 cut(s) 393
BsaHI GRCGYC 1 cut(s) 113
BsaJI CCNNGG 1 cut(s) 510
BsaWI WCCGGW 2 cut(s) 90, 225
Bsc4I CCNNNNNNNGG 3 cut(s) 97, 232, 516
Bse1I ACTGG 1 cut(s) 346
Bse3DI GCAATG 1 cut(s) 387
BseDI CCNNGG 1 cut(s) 510
BseGI GGATG 2 cut(s) 339, 588
BseLI CCNNNNNNNGG 3 cut(s) 97, 232, 516
BseMI GCAATG 1 cut(s) 387
BseMII CTCAG 2 cut(s) 384, 578
BseNI ACTGG 1 cut(s) 346
BseRI GAGGAG 2 cut(s) 481, 506
BsgI GTGCAG 1 cut(s) 607
BshFI GGCC 2 cut(s) 17, 562
BshNI GGYRCC 2 cut(s) 311, 503
BsiHKAI GWGCWC 1 cut(s) 609
BsiSI CCGG 2 cut(s) 91, 226
BslFI GGGAC 1 cut(s) 250
BslI CCNNNNNNNGG 3 cut(s) 97, 232, 516
BsmAI GTCTC 2 cut(s) 378, 568
BsmFI GGGAC 1 cut(s) 250
BsnI GGCC 2 cut(s) 17, 562
Bsp1286I GDGCHC 1 cut(s) 609
Bsp143I GATC 6 cut(s) 149, 161, 203, 219, 498, 519
BspACI CCGC 4 cut(s) 7, 13, 327, 507
BspANI GGCC 2 cut(s) 17, 562
BspCNI CTCAG 2 cut(s) 385, 577
BspHI TCATGA 1 cut(s) 487
BspLI GGNNCC 2 cut(s) 313, 505
BspPI GGATC 4 cut(s) 169, 198, 227, 527
BspT107I GGYRCC 2 cut(s) 311, 503
BsrBI CCGCTC 1 cut(s) 329
BsrDI GCAATG 1 cut(s) 387
BsrI ACTGG 1 cut(s) 346
BssECI CCNNGG 1 cut(s) 510
BssMI GATC 6 cut(s) 149, 161, 203, 219, 498, 519
BssNI GRCGYC 1 cut(s) 113
BssSI CACGAG 1 cut(s) 548
Bst2BI CACGAG 1 cut(s) 548
Bst4CI ACNGT 3 cut(s) 49, 454, 514
BstACI GRCGYC 1 cut(s) 113
BstC8I GCNNGC 1 cut(s) 15
BstDEI CTNAG 2 cut(s) 393, 564
BstDSI CCRYGG 1 cut(s) 510
BstF5I GGATG 2 cut(s) 339, 588
BstKTI GATC 6 cut(s) 152, 164, 206, 222, 501, 522
BstMAI GTCTC 2 cut(s) 378, 568
BstMBI GATC 6 cut(s) 149, 161, 203, 219, 498, 519
BstMWI GCNNNNNNNGC 1 cut(s) 335
BstNSI RCATGY 1 cut(s) 292
BstV2I GAAGAC 1 cut(s) 397
BstX2I RGATCY 1 cut(s) 203
BstYI RGATCY 1 cut(s) 203
BsuRI GGCC 2 cut(s) 17, 562
BtgI CCRYGG 1 cut(s) 510
BtsCI GGATG 2 cut(s) 339, 588
BtsIMutI CAGTG 2 cut(s) 353, 450
Cac8I GCNNGC 1 cut(s) 15
CciI TCATGA 1 cut(s) 487
Cfr13I GGNCC 1 cut(s) 15
CseI GACGC 1 cut(s) 102
CviAII CATG 4 cut(s) 267, 289, 488, 622
CviJI RGCY 9 cut(s) 17, 29, 274, 319, 358, 536, 562, 607, 619
CviKI_1 RGCY 9 cut(s) 17, 29, 274, 319, 358, 536, 562, 607, 619
DdeI CTNAG 2 cut(s) 393, 564
DpnI GATC 6 cut(s) 151, 163, 205, 221, 500, 521
DpnII GATC 6 cut(s) 149, 161, 203, 219, 498, 519
Ecl136II GAGCTC 1 cut(s) 607
Eco147I AGGCCT 1 cut(s) 562
Eco24I GRGCYC 1 cut(s) 609
Eco53kI GAGCTC 1 cut(s) 607
Eco57I CTGAAG 2 cut(s) 96, 558
EcoICRI GAGCTC 1 cut(s) 607
EcoRI GAATTC 1 cut(s) 626
EcoT38I GRGCYC 1 cut(s) 609
FaeI CATG 4 cut(s) 270, 292, 491, 625
FaiI YATR 5 cut(s) 26, 268, 290, 489, 623
FaqI GGGAC 1 cut(s) 250
FatI CATG 4 cut(s) 266, 288, 487, 621
FauI CCCGC 1 cut(s) 6
FblI GTMKAC 1 cut(s) 44
Fnu4HI GCNGC 1 cut(s) 507
FokI GGATG 2 cut(s) 326, 595
FriOI GRGCYC 1 cut(s) 609
Fsp4HI GCNGC 1 cut(s) 507
FspBI CTAG 1 cut(s) 558
GluI GCNGC 1 cut(s) 507
HaeIII GGCC 2 cut(s) 17, 562
HapII CCGG 2 cut(s) 91, 226
HgaI GACGC 1 cut(s) 102
Hin1I GRCGYC 1 cut(s) 113
Hin1II CATG 4 cut(s) 270, 292, 491, 625
HinfI GANTC 4 cut(s) 83, 299, 416, 422
HpaII CCGG 2 cut(s) 91, 226
HphI GGTGA 1 cut(s) 526
Hpy166II GTNNAC 1 cut(s) 45
Hpy188I TCNGA 2 cut(s) 421, 427
Hpy188III TCNNGA 3 cut(s) 147, 153, 488
Hpy8I GTNNAC 1 cut(s) 45
Hpy99I CGWCG 2 cut(s) 43, 118
HpyAV CCTTC 1 cut(s) 369
HpyCH4III ACNGT 3 cut(s) 49, 454, 514
HpyCH4V TGCA 1 cut(s) 588
HpyF10VI GCNNNNNNNGC 1 cut(s) 335
HpyF3I CTNAG 2 cut(s) 393, 564
Hsp92I GRCGYC 1 cut(s) 113
Hsp92II CATG 4 cut(s) 270, 292, 491, 625
Kzo9I GATC 6 cut(s) 149, 161, 203, 219, 498, 519
LmnI GCTCC 1 cut(s) 324
LpnPI CCDG 8 cut(s) 87, 104, 160, 201, 239, 275, 359, 574
MaeI CTAG 1 cut(s) 558
MalI GATC 6 cut(s) 151, 163, 205, 221, 500, 521
MbiI CCGCTC 1 cut(s) 329
MboI GATC 6 cut(s) 149, 161, 203, 219, 498, 519
MboII GAAGA 3 cut(s) 89, 92, 397
MflI RGATCY 1 cut(s) 203
MhlI GDGCHC 1 cut(s) 609
MluCI AATT 3 cut(s) 294, 433, 626
MnlI CCTC 9 cut(s) 28, 67, 264, 388, 434, 459, 484, 510, 573
MseI TTAA 2 cut(s) 191, 480
MslI CAYNNNNRTG 1 cut(s) 248
MspI CCGG 2 cut(s) 91, 226
MwoI GCNNNNNNNGC 1 cut(s) 335
NdeII GATC 6 cut(s) 149, 161, 203, 219, 498, 519
NlaIII CATG 4 cut(s) 270, 292, 491, 625
NlaIV GGNNCC 2 cut(s) 313, 505
NspI RCATGY 1 cut(s) 292
PagI TCATGA 1 cut(s) 487
PceI AGGCCT 1 cut(s) 562
PcsI WCGNNNNNNNCGW 1 cut(s) 38
PfeI GAWTC 4 cut(s) 83, 299, 416, 422
PflFI GACNNNGTC 1 cut(s) 401
PkrI GCNGC 1 cut(s) 508
Psp124BI GAGCTC 1 cut(s) 609
PspN4I GGNNCC 2 cut(s) 313, 505
PspPI GGNCC 1 cut(s) 15
PsuI RGATCY 1 cut(s) 203
PsyI GACNNNGTC 1 cut(s) 401
RseI CAYNNNNRTG 1 cut(s) 248
SacI GAGCTC 1 cut(s) 609
SaqAI TTAA 2 cut(s) 191, 480
SatI GCNGC 1 cut(s) 507
Sau3AI GATC 6 cut(s) 149, 161, 203, 219, 498, 519
Sau96I GGNCC 1 cut(s) 15
SduI GDGCHC 1 cut(s) 609
SetI ASST 3 cut(s) 264, 321, 609
SmiMI CAYNNNNRTG 1 cut(s) 248
Sse9I AATT 3 cut(s) 294, 433, 626
SseBI AGGCCT 1 cut(s) 562
SsiI CCGC 4 cut(s) 7, 13, 327, 507
SspMI CTAG 1 cut(s) 558
SstI GAGCTC 1 cut(s) 609
StuI AGGCCT 1 cut(s) 562
TaaI ACNGT 3 cut(s) 49, 454, 514
TaqI TCGA 4 cut(s) 164, 354, 408, 609
TasI AATT 3 cut(s) 294, 433, 626
TauI GCSGC 1 cut(s) 509
TfiI GAWTC 4 cut(s) 83, 299, 416, 422
Tru1I TTAA 2 cut(s) 191, 480
Tru9I TTAA 2 cut(s) 191, 480
TscAI CASTG 2 cut(s) 353, 457
TspDTI ATGAA 3 cut(s) 17, 213, 614
TspRI CASTG 2 cut(s) 353, 457
Tth111I GACNNNGTC 1 cut(s) 401
XapI RAATTY 2 cut(s) 433, 626
XceI RCATGY 1 cut(s) 292
XmiI GTMKAC 1 cut(s) 44
XspI CTAG 1 cut(s) 558
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.