Rmu_sc0014642.1_g000005

repressing transcription factor binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0014642.1
OG0000518
Physical Location & Seq
Reverse (-)
8269 .. 8829
561 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0014642.1_g000005.1.cds

Sequence Viewer

Length: 561 bp
atgaagcagaagctgacctttgctatggcttcatcaacgtcgtctaccgtgaaaccctcacgcttccctgaagaagaatcagtccagtgttgggagagcgaaatggcggcgtcaaacagaacccgaccccaaatccaatccagatcaagaaaaggatcgaaaacaagagacatcaataatgtcttaaaagatgaaagatccaagatttctgggataaaccggattttggggacacccattcccgtgagcaataacctgacatggaggcttttgaaatctcacatgagaattgaatcttattacggcaccaggctccactccgctctcaatgccatccacgagtgtttcgagccttccaaagacccctacaccaacagagacattactgaggacattgtcttcgacttggaatctgattccgagttgaatttgagagggttttacactatggttttgaagaggagagatgatgatgatggtcatgaggagatgatcgatgccgccacggtgaggataaataagggagtggttgaagtgccactcgtggcgactaggccttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000118 GO:0000228 GO:0000785 GO:0000790 GO:0001085 GO:0001103 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0004407 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005813 GO:0005815 GO:0005856 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0008026 GO:0008094 GO:0008134 GO:0008150 GO:0008152 GO:0008270 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0015630 GO:0016043 GO:0016462 GO:0016569 GO:0016570 GO:0016575 GO:0016581 GO:0016787 GO:0016810 GO:0016811 GO:0016817 GO:0016818 GO:0016887 GO:0017053 GO:0017111 GO:0019213 GO:0019219 GO:0019222 GO:0019538 GO:0019899 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032392 GO:0032508 GO:0032991 GO:0033558 GO:0035601 GO:0036211 GO:0042623 GO:0042826 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0046872 GO:0046914 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070035 GO:0070491 GO:0070603 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0090545 GO:0090568 GO:0097159 GO:0098732 GO:0140096 GO:0140097 GO:1901363 GO:1901564 GO:1902494 GO:1903506 GO:1904949 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_1 Acetyltransf_10 Agenet Jas PHD

Protein Analysis

186

Amino Acids

21.25

Weight (kDa)

7.79

Isoelectric Point (pI)

58.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000518)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21681 FvH4_3g29252 FvH4_3g38950 FvH4_3g44310 FvH4_5g29400
malus_domestica MD03G1066300.v1.1
rosa_chinensis RchiOBHm_Chr2g0087341 RchiOBHm_Chr7g0225691 RchiOBHm_Chr7g0225721 RchiOBHm_Chr7g0225751 RchiOBHm_Chr7g0225781 RchiOBHm_Chr7g0225811 RchiOBHm_Chr7g0225821 RchiOBHm_Chr7g0225841 RchiOBHm_Chr7g0225941
rosa_laevigata RLG00000001777 RLG00000001779 RLG00000001787 RLG00000001796 RLG00000015858 RLG00000018399 RLG00000030202
rosa_multiflora Rmu_co7995100.1_g000001 Rmu_sc0003367.1_g000025 Rmu_sc0004082.1_g000018 Rmu_sc0006064.1_g000002 Rmu_sc0011806.1_g000001 Rmu_sc0014642.1_g000005 Rmu_sc0014767.1_g000003 Rmu_sc0015723.1_g000001 Rmu_sc0030795.1_g000001 Rmu_sc0033647.1_g000001
rosa_roxburghii Rroxscaffold_1G00028220 Rroxscaffold_2G00089180 Rroxscaffold_2G00125860 Rroxscaffold_3G00233350 Rroxscaffold_3G00239570 Rroxscaffold_4G00325690 Rroxscaffold_5G00348560 Rroxscaffold_7G00198070
rosa_rugosa Rorug01G0045600 Rorug01G0474300.1 Rorug07G0220000 Rorug07G0220100 Rorug07G0220200 Rorug07G0220300 Rorug07G0232800 Rorug07G0233000 Rorug07G0233100 Rorug07G0233100 Rorug07G0233200 Rorug07G0233300.1
rosa_samantha Rh1AG061100 Rh1BG052200 Rh1CG063300 Rh1CG063600 Rh1DG067700 Rh2AG027900 Rh2BG027400 Rh2CG028200 Rh2DG028000 Rh7AG369700 Rh7AG370100 Rh7AG371200 Rh7AG387800 Rh7BG366500 Rh7BG366800 Rh7BG367000 Rh7BG367600 Rh7CG388600 Rh7CG389000 Rh7CG389800 Rh7CG407400 Rh7DG377400 Rh7DG377500 Rh7DG377900 Rh7DG378600 Rh7DG378700 Rh7DG378800
rosa_wichuraiana Rw0G020970 Rw0G020980 Rw1G005200 Rw2G002210 Rw7G031830 Rw7G031860 Rw7G031900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 305
AccBSI CCGCTC 1 cut(s) 323
AccI GTMKAC 1 cut(s) 44
AciI CCGC 3 cut(s) 107, 321, 501
AclWI GGATC 2 cut(s) 163, 192
AcsI RAATTY 1 cut(s) 427
AcuI CTGAAG 1 cut(s) 90
AcyI GRCGYC 1 cut(s) 110
AfiI CCNNNNNNNGG 3 cut(s) 91, 226, 510
AgsI TTSAA 5 cut(s) 274, 293, 427, 457, 533
AjnI CCWGG 1 cut(s) 308
AluBI AGCT 1 cut(s) 13
AluI AGCT 1 cut(s) 13
Alw26I GTCTC 2 cut(s) 162, 372
AlwI GGATC 2 cut(s) 163, 192
AlwNI CAGNNNCTG 1 cut(s) 13
AoxI GGCC 1 cut(s) 554
ApoI RAATTY 1 cut(s) 427
ArsI GACNNNNNNTTYG 2 cut(s) 383, 415
AsuHPI GGTGA 1 cut(s) 520
BanI GGYRCC 1 cut(s) 305
BauI CACGAG 2 cut(s) 338, 542
BbsI GAAGAC 1 cut(s) 391
BccI CCATC 2 cut(s) 341, 470
BceAI ACGGC 1 cut(s) 319
BciT130I CCWGG 1 cut(s) 310
BcoDI GTCTC 2 cut(s) 162, 372
BfaI CTAG 1 cut(s) 552
BisI GCNGC 2 cut(s) 108, 501
BlsI GCNGC 2 cut(s) 109, 502
Bme1390I CCNGG 1 cut(s) 310
BmiI GGNNCC 2 cut(s) 307, 314
BmrFI CCNGG 1 cut(s) 310
BmsI GCATC 1 cut(s) 487
BpiI GAAGAC 1 cut(s) 391
Bsa29I ATCGAT 1 cut(s) 495
BsaHI GRCGYC 1 cut(s) 110
BsaJI CCNNGG 1 cut(s) 504
BsaWI WCCGGW 1 cut(s) 219
Bsc4I CCNNNNNNNGG 3 cut(s) 91, 226, 510
Bse1I ACTGG 1 cut(s) 85
BseBI CCWGG 1 cut(s) 310
BseCI ATCGAT 1 cut(s) 495
BseDI CCNNGG 1 cut(s) 504
BseGI GGATG 1 cut(s) 333
BseLI CCNNNNNNNGG 3 cut(s) 91, 226, 510
BseMII CTCAG 1 cut(s) 378
BseNI ACTGG 1 cut(s) 85
BseRI GAGGAG 2 cut(s) 475, 500
BshFI GGCC 1 cut(s) 556
BshNI GGYRCC 1 cut(s) 305
BshVI ATCGAT 1 cut(s) 495
BsiSI CCGG 1 cut(s) 220
BslFI GGGAC 1 cut(s) 244
BslI CCNNNNNNNGG 3 cut(s) 91, 226, 510
BsmAI GTCTC 2 cut(s) 162, 372
BsmFI GGGAC 1 cut(s) 244
BsnI GGCC 1 cut(s) 556
Bsp143I GATC 4 cut(s) 143, 155, 197, 492
BspACI CCGC 3 cut(s) 107, 321, 501
BspANI GGCC 1 cut(s) 556
BspCNI CTCAG 1 cut(s) 379
BspDI ATCGAT 1 cut(s) 495
BspHI TCATGA 1 cut(s) 481
BspLI GGNNCC 2 cut(s) 307, 314
BspPI GGATC 2 cut(s) 163, 192
BspT107I GGYRCC 1 cut(s) 305
BsrBI CCGCTC 1 cut(s) 323
BsrI ACTGG 1 cut(s) 85
BssECI CCNNGG 1 cut(s) 504
BssMI GATC 4 cut(s) 143, 155, 197, 492
BssNI GRCGYC 1 cut(s) 110
BssSI CACGAG 2 cut(s) 338, 542
Bst2BI CACGAG 2 cut(s) 338, 542
Bst2UI CCWGG 1 cut(s) 310
Bst4CI ACNGT 2 cut(s) 49, 508
Bst6I CTCTTC 1 cut(s) 452
BstACI GRCGYC 1 cut(s) 110
BstDEI CTNAG 2 cut(s) 387, 558
BstDSI CCRYGG 1 cut(s) 504
BstF5I GGATG 1 cut(s) 333
BstKTI GATC 4 cut(s) 146, 158, 200, 495
BstMAI GTCTC 2 cut(s) 162, 372
BstMBI GATC 4 cut(s) 143, 155, 197, 492
BstMWI GCNNNNNNNGC 1 cut(s) 329
BstNI CCWGG 1 cut(s) 310
BstSCI CCNGG 1 cut(s) 308
BstV2I GAAGAC 1 cut(s) 391
BstX2I RGATCY 1 cut(s) 197
BstYI RGATCY 1 cut(s) 197
Bsu15I ATCGAT 1 cut(s) 495
BsuRI GGCC 1 cut(s) 556
BsuTUI ATCGAT 1 cut(s) 495
BtgI CCRYGG 1 cut(s) 504
BtsCI GGATG 1 cut(s) 333
BtsIMutI CAGTG 1 cut(s) 92
CaiI CAGNNNCTG 1 cut(s) 13
CciI TCATGA 1 cut(s) 481
ClaI ATCGAT 1 cut(s) 495
CseI GACGC 1 cut(s) 99
CviAII CATG 3 cut(s) 261, 283, 482
CviJI RGCY 6 cut(s) 13, 29, 268, 313, 352, 556
CviKI_1 RGCY 6 cut(s) 13, 29, 268, 313, 352, 556
DdeI CTNAG 2 cut(s) 387, 558
DpnI GATC 4 cut(s) 145, 157, 199, 494
DpnII GATC 4 cut(s) 143, 155, 197, 492
Eam1104I CTCTTC 1 cut(s) 452
EarI CTCTTC 1 cut(s) 452
Eco147I AGGCCT 1 cut(s) 556
Eco57I CTGAAG 1 cut(s) 90
EcoRII CCWGG 1 cut(s) 308
FaeI CATG 3 cut(s) 264, 286, 485
FaiI YATR 5 cut(s) 26, 262, 284, 449, 483
FalI AAGNNNNNCTT 1 cut(s) 34
FaqI GGGAC 1 cut(s) 244
FatI CATG 3 cut(s) 260, 282, 481
FblI GTMKAC 1 cut(s) 44
Fnu4HI GCNGC 2 cut(s) 108, 501
FokI GGATG 1 cut(s) 320
Fsp4HI GCNGC 2 cut(s) 108, 501
FspBI CTAG 1 cut(s) 552
GluI GCNGC 2 cut(s) 108, 501
HaeIII GGCC 1 cut(s) 556
HapII CCGG 1 cut(s) 220
HgaI GACGC 1 cut(s) 99
Hin1I GRCGYC 1 cut(s) 110
Hin1II CATG 3 cut(s) 264, 286, 485
HinfI GANTC 4 cut(s) 77, 293, 410, 416
HpaII CCGG 1 cut(s) 220
HphI GGTGA 1 cut(s) 520
Hpy166II GTNNAC 1 cut(s) 45
Hpy188I TCNGA 2 cut(s) 415, 421
Hpy188III TCNNGA 3 cut(s) 141, 147, 482
Hpy8I GTNNAC 1 cut(s) 45
Hpy99I CGWCG 1 cut(s) 43
HpyAV CCTTC 1 cut(s) 363
HpyCH4III ACNGT 2 cut(s) 49, 508
HpyCH4IV ACGT 1 cut(s) 38
HpyF10VI GCNNNNNNNGC 1 cut(s) 329
HpyF3I CTNAG 2 cut(s) 387, 558
HpySE526I ACGT 1 cut(s) 38
Hsp92I GRCGYC 1 cut(s) 110
Hsp92II CATG 3 cut(s) 264, 286, 485
Kzo9I GATC 4 cut(s) 143, 155, 197, 492
LmnI GCTCC 1 cut(s) 318
LpnPI CCDG 8 cut(s) 81, 98, 154, 195, 233, 269, 295, 322
LweI GCATC 1 cut(s) 487
MaeI CTAG 1 cut(s) 552
MaeII ACGT 1 cut(s) 38
MalI GATC 4 cut(s) 145, 157, 199, 494
MbiI CCGCTC 1 cut(s) 323
MboI GATC 4 cut(s) 143, 155, 197, 492
MboII GAAGA 4 cut(s) 83, 86, 391, 469
MflI RGATCY 1 cut(s) 197
MluCI AATT 2 cut(s) 288, 427
MnlI CCTC 7 cut(s) 67, 258, 382, 428, 453, 478, 504
MseI TTAA 1 cut(s) 185
MslI CAYNNNNRTG 1 cut(s) 242
MspI CCGG 1 cut(s) 220
MspR9I CCNGG 1 cut(s) 310
MvaI CCWGG 1 cut(s) 310
MwoI GCNNNNNNNGC 1 cut(s) 329
NdeII GATC 4 cut(s) 143, 155, 197, 492
NlaIII CATG 3 cut(s) 264, 286, 485
NlaIV GGNNCC 2 cut(s) 307, 314
PagI TCATGA 1 cut(s) 481
PceI AGGCCT 1 cut(s) 556
PcsI WCGNNNNNNNCGW 1 cut(s) 345
PfeI GAWTC 4 cut(s) 77, 293, 410, 416
PflFI GACNNNGTC 1 cut(s) 395
PkrI GCNGC 2 cut(s) 109, 502
Psp6I CCWGG 1 cut(s) 308
PspGI CCWGG 1 cut(s) 308
PspN4I GGNNCC 2 cut(s) 307, 314
PstNI CAGNNNCTG 1 cut(s) 13
PsuI RGATCY 1 cut(s) 197
PsyI GACNNNGTC 1 cut(s) 395
RseI CAYNNNNRTG 1 cut(s) 242
SaqAI TTAA 1 cut(s) 185
SatI GCNGC 2 cut(s) 108, 501
Sau3AI GATC 4 cut(s) 143, 155, 197, 492
ScrFI CCNGG 1 cut(s) 310
SetI ASST 4 cut(s) 15, 20, 41, 258
SfaNI GCATC 1 cut(s) 487
SmiMI CAYNNNNRTG 1 cut(s) 242
Sse9I AATT 2 cut(s) 288, 427
SseBI AGGCCT 1 cut(s) 556
SsiI CCGC 3 cut(s) 107, 321, 501
SspMI CTAG 1 cut(s) 552
StuI AGGCCT 1 cut(s) 556
StyD4I CCNGG 1 cut(s) 308
TaaI ACNGT 2 cut(s) 49, 508
TaiI ACGT 1 cut(s) 41
TaqI TCGA 4 cut(s) 158, 348, 402, 495
TasI AATT 2 cut(s) 288, 427
TauI GCSGC 2 cut(s) 110, 503
TfiI GAWTC 4 cut(s) 77, 293, 410, 416
Tru1I TTAA 1 cut(s) 185
Tru9I TTAA 1 cut(s) 185
TscAI CASTG 1 cut(s) 92
TspDTI ATGAA 3 cut(s) 17, 21, 207
TspRI CASTG 1 cut(s) 92
Tth111I GACNNNGTC 1 cut(s) 395
XapI RAATTY 1 cut(s) 427
XmiI GTMKAC 1 cut(s) 44
XspI CTAG 1 cut(s) 552
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.