RLG00000001787

repressing transcription factor binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000518
Physical Location & Seq
Reverse (-)
20771606 .. 20773689
2084 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001787

Sequence Viewer

Length: 597 bp
ATGGGAATTGAATCTTATTACGGCACCAAACTCCACTCCGCTCTCAATGCCATCCACGAGTGTTTCGAGCCTTCCAAAGACCCTTACACCAACAGAGACATTGCTGAGGACATTGTCTTCGACTTGGAATCCGATTCCGAGTTGAATTTGAGAGGGTTTTACACTGTGGTTTTGGAGAGGAGAGATGATGATGATGGTCATGAGGAGATGATCGGTGCCGCCACGGTGAGGATCAATATGGGAGTGGCTGAAGTGCCACTCGTGGCGACTAGGCCTCAGTTTAGGAGACTTGGGATGTGCAGGGTTTTGATGAATGAGCTCGGAAATCGGCTCATGGAATTCGGCATTGAGAGGTTAGTCTTGCCTTCGGCACAAAGTGCACTCAATACATGGACTAGTAGTTCAATTGGGTTTTCAATGATGACTGAGGCTGAGATATCAGAACTCAGTGCTGATCATGACTTCTTGGATTTTAAGGACACTGTTATGTGTCATAAAGAATTGACTCCTAATAACTTGAAGAAAGTCAGCATCATGGCTTGTGAAGAGATGGGATGTAATAATGTAGGATCATGGGAAGCAACTGCCGTTGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000118 GO:0000228 GO:0000785 GO:0000790 GO:0001085 GO:0001103 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0004407 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005813 GO:0005815 GO:0005856 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0008026 GO:0008094 GO:0008134 GO:0008150 GO:0008152 GO:0008270 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0015630 GO:0016043 GO:0016462 GO:0016569 GO:0016570 GO:0016575 GO:0016581 GO:0016787 GO:0016810 GO:0016811 GO:0016817 GO:0016818 GO:0016887 GO:0017053 GO:0017111 GO:0019213 GO:0019219 GO:0019222 GO:0019538 GO:0019899 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032392 GO:0032508 GO:0032991 GO:0033558 GO:0035601 GO:0036211 GO:0042623 GO:0042826 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0046872 GO:0046914 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070035 GO:0070491 GO:0070603 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0090545 GO:0090568 GO:0097159 GO:0098732 GO:0140096 GO:0140097 GO:1901363 GO:1901564 GO:1902494 GO:1903506 GO:1904949 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_1 Acetyltransf_10 Agenet Jas PHD

Protein Analysis

199

Amino Acids

22.14

Weight (kDa)

4.6

Isoelectric Point (pI)

42.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IDM1_C PF23209 22 - 167 4.4e-36 Increased DNA methylation 1, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000518)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21681 FvH4_3g29252 FvH4_3g38950 FvH4_3g44310 FvH4_5g29400
malus_domestica MD03G1066300.v1.1
rosa_chinensis RchiOBHm_Chr2g0087341 RchiOBHm_Chr7g0225691 RchiOBHm_Chr7g0225721 RchiOBHm_Chr7g0225751 RchiOBHm_Chr7g0225781 RchiOBHm_Chr7g0225811 RchiOBHm_Chr7g0225821 RchiOBHm_Chr7g0225841 RchiOBHm_Chr7g0225941
rosa_laevigata RLG00000001777 RLG00000001779 RLG00000001787 RLG00000001796 RLG00000015858 RLG00000018399 RLG00000030202
rosa_multiflora Rmu_co7995100.1_g000001 Rmu_sc0003367.1_g000025 Rmu_sc0004082.1_g000018 Rmu_sc0006064.1_g000002 Rmu_sc0011806.1_g000001 Rmu_sc0014642.1_g000005 Rmu_sc0014767.1_g000003 Rmu_sc0015723.1_g000001 Rmu_sc0030795.1_g000001 Rmu_sc0033647.1_g000001
rosa_roxburghii Rroxscaffold_1G00028220 Rroxscaffold_2G00089180 Rroxscaffold_2G00125860 Rroxscaffold_3G00233350 Rroxscaffold_3G00239570 Rroxscaffold_4G00325690 Rroxscaffold_5G00348560 Rroxscaffold_7G00198070
rosa_rugosa Rorug01G0045600 Rorug01G0474300.1 Rorug07G0220000 Rorug07G0220100 Rorug07G0220200 Rorug07G0220300 Rorug07G0232800 Rorug07G0233000 Rorug07G0233100 Rorug07G0233100 Rorug07G0233200 Rorug07G0233300.1
rosa_samantha Rh1AG061100 Rh1BG052200 Rh1CG063300 Rh1CG063600 Rh1DG067700 Rh2AG027900 Rh2BG027400 Rh2CG028200 Rh2DG028000 Rh7AG369700 Rh7AG370100 Rh7AG371200 Rh7AG387800 Rh7BG366500 Rh7BG366800 Rh7BG367000 Rh7BG367600 Rh7CG388600 Rh7CG389000 Rh7CG389800 Rh7CG407400 Rh7DG377400 Rh7DG377500 Rh7DG377900 Rh7DG378600 Rh7DG378700 Rh7DG378800
rosa_wichuraiana Rw0G020970 Rw0G020980 Rw1G005200 Rw2G002210 Rw7G031830 Rw7G031860 Rw7G031900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 23, 215
AccBSI CCGCTC 1 cut(s) 41
AciI CCGC 2 cut(s) 39, 219
AclWI GGATC 2 cut(s) 239, 577
AcsI RAATTY 2 cut(s) 145, 338
AcuI CTGAAG 1 cut(s) 270
AdeI CACNNNGTG 1 cut(s) 377
AfiI CCNNNNNNNGG 1 cut(s) 228
AgsI TTSAA 5 cut(s) 11, 145, 405, 417, 520
AhlI ACTAGT 1 cut(s) 395
AloI GAACNNNNNNTCC 2 cut(s) 385, 417
AluBI AGCT 1 cut(s) 319
AluI AGCT 1 cut(s) 319
Alw21I GWGCWC 2 cut(s) 321, 382
Alw26I GTCTC 2 cut(s) 90, 280
Alw44I GTGCAC 1 cut(s) 378
AlwI GGATC 2 cut(s) 239, 577
AoxI GGCC 1 cut(s) 272
ApaLI GTGCAC 1 cut(s) 378
ApoI RAATTY 2 cut(s) 145, 338
ArsI GACNNNNNNTTYG 2 cut(s) 101, 133
AsuHPI GGTGA 1 cut(s) 238
BaeGI GKGCMC 1 cut(s) 382
BanI GGYRCC 2 cut(s) 23, 215
BanII GRGCYC 1 cut(s) 321
BauI CACGAG 2 cut(s) 56, 260
BbsI GAAGAC 1 cut(s) 109
Bbv12I GWGCWC 2 cut(s) 321, 382
BbvCI CCTCAGC 1 cut(s) 105
BccI CCATC 3 cut(s) 59, 188, 544
BceAI ACGGC 2 cut(s) 37, 572
BclI TGATCA 1 cut(s) 454
BcoDI GTCTC 2 cut(s) 90, 280
BcuI ACTAGT 1 cut(s) 395
BfaI CTAG 2 cut(s) 270, 396
BisI GCNGC 1 cut(s) 219
BlsI GCNGC 1 cut(s) 220
BmiI GGNNCC 2 cut(s) 25, 217
BmsI GCATC 1 cut(s) 540
BpiI GAAGAC 1 cut(s) 109
Bpu10I CCTNAGC 1 cut(s) 105
BsaJI CCNNGG 1 cut(s) 222
Bsc4I CCNNNNNNNGG 1 cut(s) 228
Bse3DI GCAATG 1 cut(s) 99
BseDI CCNNGG 1 cut(s) 222
BseGI GGATG 3 cut(s) 51, 300, 560
BseLI CCNNNNNNNGG 1 cut(s) 228
BseMI GCAATG 1 cut(s) 99
BseMII CTCAG 5 cut(s) 96, 290, 417, 423, 460
BseRI GAGGAG 2 cut(s) 193, 218
BseSI GKGCMC 1 cut(s) 382
BsgI GTGCAG 1 cut(s) 319
BshFI GGCC 1 cut(s) 274
BshNI GGYRCC 2 cut(s) 23, 215
BsiHKAI GWGCWC 2 cut(s) 321, 382
BslI CCNNNNNNNGG 1 cut(s) 228
BsmAI GTCTC 2 cut(s) 90, 280
BsnI GGCC 1 cut(s) 274
Bsp1286I GDGCHC 2 cut(s) 321, 382
Bsp143I GATC 4 cut(s) 210, 231, 454, 569
BspACI CCGC 2 cut(s) 39, 219
BspANI GGCC 1 cut(s) 274
BspCNI CTCAG 5 cut(s) 97, 289, 418, 424, 459
BspHI TCATGA 2 cut(s) 199, 457
BspLI GGNNCC 2 cut(s) 25, 217
BspPI GGATC 2 cut(s) 239, 577
BspT107I GGYRCC 2 cut(s) 23, 215
BsrBI CCGCTC 1 cut(s) 41
BsrDI GCAATG 1 cut(s) 99
BssECI CCNNGG 1 cut(s) 222
BssMI GATC 4 cut(s) 210, 231, 454, 569
BssSI CACGAG 2 cut(s) 56, 260
Bst2BI CACGAG 2 cut(s) 56, 260
Bst4CI ACNGT 3 cut(s) 166, 226, 484
Bst6I CTCTTC 1 cut(s) 540
BstAPI GCANNNNNTGC 1 cut(s) 377
BstDEI CTNAG 5 cut(s) 105, 276, 426, 432, 446
BstDSI CCRYGG 1 cut(s) 222
BstF5I GGATG 3 cut(s) 51, 300, 560
BstKTI GATC 4 cut(s) 213, 234, 457, 572
BstMAI GTCTC 2 cut(s) 90, 280
BstMBI GATC 4 cut(s) 210, 231, 454, 569
BstMWI GCNNNNNNNGC 2 cut(s) 47, 377
BstSLI GKGCMC 1 cut(s) 382
BstV2I GAAGAC 1 cut(s) 109
BsuRI GGCC 1 cut(s) 274
BtgI CCRYGG 1 cut(s) 222
BtsCI GGATG 3 cut(s) 51, 300, 560
BtsIMutI CAGTG 3 cut(s) 162, 454, 480
CciI TCATGA 2 cut(s) 199, 457
CviAII CATG 6 cut(s) 200, 334, 390, 458, 535, 573
CviJI RGCY 7 cut(s) 70, 248, 274, 319, 331, 431, 539
CviKI_1 RGCY 7 cut(s) 70, 248, 274, 319, 331, 431, 539
DdeI CTNAG 5 cut(s) 105, 276, 426, 432, 446
DpnI GATC 4 cut(s) 212, 233, 456, 571
DpnII GATC 4 cut(s) 210, 231, 454, 569
DraIII CACNNNGTG 1 cut(s) 377
Eam1104I CTCTTC 1 cut(s) 540
EarI CTCTTC 1 cut(s) 540
Ecl136II GAGCTC 1 cut(s) 319
Eco147I AGGCCT 1 cut(s) 274
Eco24I GRGCYC 1 cut(s) 321
Eco32I GATATC 1 cut(s) 438
Eco53kI GAGCTC 1 cut(s) 319
Eco57I CTGAAG 1 cut(s) 270
EcoICRI GAGCTC 1 cut(s) 319
EcoRI GAATTC 1 cut(s) 338
EcoRV GATATC 1 cut(s) 438
EcoT38I GRGCYC 1 cut(s) 321
FaeI CATG 6 cut(s) 203, 337, 393, 461, 538, 576
FaiI YATR 9 cut(s) 201, 239, 335, 391, 459, 488, 495, 536, 574
FatI CATG 6 cut(s) 199, 333, 389, 457, 534, 572
FbaI TGATCA 1 cut(s) 454
Fnu4HI GCNGC 1 cut(s) 219
FokI GGATG 3 cut(s) 38, 307, 567
FriOI GRGCYC 1 cut(s) 321
Fsp4HI GCNGC 1 cut(s) 219
FspBI CTAG 2 cut(s) 270, 396
GluI GCNGC 1 cut(s) 219
HaeIII GGCC 1 cut(s) 274
Hin1II CATG 6 cut(s) 203, 337, 393, 461, 538, 576
HinfI GANTC 4 cut(s) 11, 128, 134, 505
HphI GGTGA 1 cut(s) 238
Hpy166II GTNNAC 1 cut(s) 380
Hpy188I TCNGA 4 cut(s) 133, 139, 323, 442
Hpy188III TCNNGA 2 cut(s) 200, 458
Hpy8I GTNNAC 1 cut(s) 380
HpyAV CCTTC 2 cut(s) 81, 375
HpyCH4III ACNGT 3 cut(s) 166, 226, 484
HpyCH4V TGCA 2 cut(s) 300, 380
HpyF10VI GCNNNNNNNGC 2 cut(s) 47, 377
HpyF3I CTNAG 5 cut(s) 105, 276, 426, 432, 446
Hsp92II CATG 6 cut(s) 203, 337, 393, 461, 538, 576
Ksp22I TGATCA 1 cut(s) 454
Kzo9I GATC 4 cut(s) 210, 231, 454, 569
LpnPI CCDG 1 cut(s) 286
LweI GCATC 1 cut(s) 540
MaeI CTAG 2 cut(s) 270, 396
MalI GATC 4 cut(s) 212, 233, 456, 571
MbiI CCGCTC 1 cut(s) 41
MboI GATC 4 cut(s) 210, 231, 454, 569
MboII GAAGA 3 cut(s) 109, 532, 557
MfeI CAATTG 1 cut(s) 405
MhlI GDGCHC 2 cut(s) 321, 382
MluCI AATT 5 cut(s) 6, 145, 338, 405, 500
MlyI GAGTC 1 cut(s) 499
MnlI CCTC 8 cut(s) 100, 146, 171, 196, 222, 285, 345, 421
MseI TTAA 1 cut(s) 474
MslI CAYNNNNRTG 1 cut(s) 485
MunI CAATTG 1 cut(s) 405
MwoI GCNNNNNNNGC 2 cut(s) 47, 377
NdeII GATC 4 cut(s) 210, 231, 454, 569
NlaIII CATG 6 cut(s) 203, 337, 393, 461, 538, 576
NlaIV GGNNCC 2 cut(s) 25, 217
PagI TCATGA 2 cut(s) 199, 457
PceI AGGCCT 1 cut(s) 274
PcsI WCGNNNNNNNCGW 1 cut(s) 63
PfeI GAWTC 3 cut(s) 11, 128, 134
PflFI GACNNNGTC 1 cut(s) 113
PkrI GCNGC 1 cut(s) 220
PleI GAGTC 1 cut(s) 499
PpsI GAGTC 1 cut(s) 499
Psp124BI GAGCTC 1 cut(s) 321
PspN4I GGNNCC 2 cut(s) 25, 217
PsyI GACNNNGTC 1 cut(s) 113
RseI CAYNNNNRTG 1 cut(s) 485
SacI GAGCTC 1 cut(s) 321
SaqAI TTAA 1 cut(s) 474
SatI GCNGC 1 cut(s) 219
Sau3AI GATC 4 cut(s) 210, 231, 454, 569
SchI GAGTC 1 cut(s) 499
SduI GDGCHC 2 cut(s) 321, 382
SetI ASST 2 cut(s) 321, 356
SfaNI GCATC 1 cut(s) 540
SmiMI CAYNNNNRTG 1 cut(s) 485
SpeI ACTAGT 1 cut(s) 395
Sse9I AATT 5 cut(s) 6, 145, 338, 405, 500
SseBI AGGCCT 1 cut(s) 274
SsiI CCGC 2 cut(s) 39, 219
SspMI CTAG 2 cut(s) 270, 396
SstI GAGCTC 1 cut(s) 321
StuI AGGCCT 1 cut(s) 274
TaaI ACNGT 3 cut(s) 166, 226, 484
TaqI TCGA 2 cut(s) 66, 120
TasI AATT 5 cut(s) 6, 145, 338, 405, 500
TauI GCSGC 1 cut(s) 221
TfiI GAWTC 3 cut(s) 11, 128, 134
Tru1I TTAA 1 cut(s) 474
Tru9I TTAA 1 cut(s) 474
TscAI CASTG 3 cut(s) 169, 454, 487
TspDTI ATGAA 1 cut(s) 326
TspRI CASTG 3 cut(s) 169, 454, 487
Tth111I GACNNNGTC 1 cut(s) 113
VneI GTGCAC 1 cut(s) 378
XapI RAATTY 2 cut(s) 145, 338
XspI CTAG 2 cut(s) 270, 396
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.