RchiOBHm_Chr7g0225691

repressing transcription factor binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000518
Physical Location & Seq
Forward (+)
48535302 .. 48538643
3342 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20214

Sequence Viewer

Length: 324 bp
ATGATCGGTGCCGCCACGGTGAGGATCAATAAGGGAGTTGCTGAAGTGCCACTCGTGGCGACTAGGCCTCAGTTTAGGAGACTTGGGATGTGCAGGATTTTGATGAATGAGCTCGAAAATCGGCTCATGGAATTCGGCATTGAGAGGTTAGTCTTGCCTTCTGCGCAAAGCGCACTCAATACATGGACTAGTAGTTCAATTGGGTTTTCAATTCTGACTGAGGCTGAGAAATCAGAACTCAGTGCTCATCATGACTTCTTGGATTTTAAGGACACTGTTATGTGCCATAAAATACTCTTGAAGCACCCAATAGTGTCATTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000118 GO:0000228 GO:0000785 GO:0000790 GO:0001085 GO:0001103 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0004407 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005813 GO:0005815 GO:0005856 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0008026 GO:0008094 GO:0008134 GO:0008150 GO:0008152 GO:0008270 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0015630 GO:0016043 GO:0016462 GO:0016569 GO:0016570 GO:0016575 GO:0016581 GO:0016787 GO:0016810 GO:0016811 GO:0016817 GO:0016818 GO:0016887 GO:0017053 GO:0017111 GO:0019213 GO:0019219 GO:0019222 GO:0019538 GO:0019899 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032392 GO:0032508 GO:0032991 GO:0033558 GO:0035601 GO:0036211 GO:0042623 GO:0042826 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0046872 GO:0046914 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070035 GO:0070491 GO:0070603 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0090545 GO:0090568 GO:0097159 GO:0098732 GO:0140096 GO:0140097 GO:1901363 GO:1901564 GO:1902494 GO:1903506 GO:1904949 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_1 Acetyltransf_10 Agenet Jas PHD

Protein Analysis

107

Amino Acids

11.99

Weight (kDa)

7.87

Isoelectric Point (pI)

38.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IDM1_C PF23209 1 - 97 8e-28 Increased DNA methylation 1, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000518)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21681 FvH4_3g29252 FvH4_3g38950 FvH4_3g44310 FvH4_5g29400
malus_domestica MD03G1066300.v1.1
rosa_chinensis RchiOBHm_Chr2g0087341 RchiOBHm_Chr7g0225691 RchiOBHm_Chr7g0225721 RchiOBHm_Chr7g0225751 RchiOBHm_Chr7g0225781 RchiOBHm_Chr7g0225811 RchiOBHm_Chr7g0225821 RchiOBHm_Chr7g0225841 RchiOBHm_Chr7g0225941
rosa_laevigata RLG00000001777 RLG00000001779 RLG00000001787 RLG00000001796 RLG00000015858 RLG00000018399 RLG00000030202
rosa_multiflora Rmu_co7995100.1_g000001 Rmu_sc0003367.1_g000025 Rmu_sc0004082.1_g000018 Rmu_sc0006064.1_g000002 Rmu_sc0011806.1_g000001 Rmu_sc0014642.1_g000005 Rmu_sc0014767.1_g000003 Rmu_sc0015723.1_g000001 Rmu_sc0030795.1_g000001 Rmu_sc0033647.1_g000001
rosa_roxburghii Rroxscaffold_1G00028220 Rroxscaffold_2G00089180 Rroxscaffold_2G00125860 Rroxscaffold_3G00233350 Rroxscaffold_3G00239570 Rroxscaffold_4G00325690 Rroxscaffold_5G00348560 Rroxscaffold_7G00198070
rosa_rugosa Rorug01G0045600 Rorug01G0474300.1 Rorug07G0220000 Rorug07G0220100 Rorug07G0220200 Rorug07G0220300 Rorug07G0232800 Rorug07G0233000 Rorug07G0233100 Rorug07G0233100 Rorug07G0233200 Rorug07G0233300.1
rosa_samantha Rh1AG061100 Rh1BG052200 Rh1CG063300 Rh1CG063600 Rh1DG067700 Rh2AG027900 Rh2BG027400 Rh2CG028200 Rh2DG028000 Rh7AG369700 Rh7AG370100 Rh7AG371200 Rh7AG387800 Rh7BG366500 Rh7BG366800 Rh7BG367000 Rh7BG367600 Rh7CG388600 Rh7CG389000 Rh7CG389800 Rh7CG407400 Rh7DG377400 Rh7DG377500 Rh7DG377900 Rh7DG378600 Rh7DG378700 Rh7DG378800
rosa_wichuraiana Rw0G020970 Rw0G020980 Rw1G005200 Rw2G002210 Rw7G031830 Rw7G031860 Rw7G031900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 165
AccB1I GGYRCC 1 cut(s) 8
AciI CCGC 1 cut(s) 12
AclWI GGATC 1 cut(s) 32
AcsI RAATTY 1 cut(s) 131
AcuI CTGAAG 1 cut(s) 63
AfiI CCNNNNNNNGG 1 cut(s) 21
AgsI TTSAA 3 cut(s) 198, 210, 301
AhlI ACTAGT 1 cut(s) 188
AloI GAACNNNNNNTCC 2 cut(s) 178, 210
AluBI AGCT 1 cut(s) 112
AluI AGCT 1 cut(s) 112
Alw21I GWGCWC 2 cut(s) 114, 247
Alw26I GTCTC 1 cut(s) 73
AlwI GGATC 1 cut(s) 32
AoxI GGCC 1 cut(s) 65
ApoI RAATTY 1 cut(s) 131
AspLEI GCGC 2 cut(s) 166, 173
AsuHPI GGTGA 1 cut(s) 31
BanI GGYRCC 1 cut(s) 8
BanII GRGCYC 1 cut(s) 114
BauI CACGAG 1 cut(s) 53
Bbv12I GWGCWC 2 cut(s) 114, 247
BcoDI GTCTC 1 cut(s) 73
BcuI ACTAGT 1 cut(s) 188
BfaI CTAG 2 cut(s) 63, 189
BisI GCNGC 1 cut(s) 12
BlsI GCNGC 1 cut(s) 13
BmiI GGNNCC 1 cut(s) 10
BsaJI CCNNGG 1 cut(s) 15
Bsc4I CCNNNNNNNGG 1 cut(s) 21
BseDI CCNNGG 1 cut(s) 15
BseGI GGATG 1 cut(s) 93
BseLI CCNNNNNNNGG 1 cut(s) 21
BseMII CTCAG 4 cut(s) 83, 210, 216, 253
BsgI GTGCAG 1 cut(s) 112
BshFI GGCC 1 cut(s) 67
BshNI GGYRCC 1 cut(s) 8
BsiHKAI GWGCWC 2 cut(s) 114, 247
BslI CCNNNNNNNGG 1 cut(s) 21
BsmAI GTCTC 1 cut(s) 73
BsnI GGCC 1 cut(s) 67
Bsp1286I GDGCHC 2 cut(s) 114, 247
Bsp143I GATC 2 cut(s) 3, 24
BspACI CCGC 1 cut(s) 12
BspANI GGCC 1 cut(s) 67
BspCNI CTCAG 4 cut(s) 82, 211, 217, 252
BspHI TCATGA 1 cut(s) 250
BspLI GGNNCC 1 cut(s) 10
BspPI GGATC 1 cut(s) 32
BspT107I GGYRCC 1 cut(s) 8
BssECI CCNNGG 1 cut(s) 15
BssMI GATC 2 cut(s) 3, 24
BssSI CACGAG 1 cut(s) 53
Bst2BI CACGAG 1 cut(s) 53
Bst4CI ACNGT 2 cut(s) 19, 277
BstDEI CTNAG 4 cut(s) 69, 219, 225, 239
BstDSI CCRYGG 1 cut(s) 15
BstF5I GGATG 1 cut(s) 93
BstHHI GCGC 2 cut(s) 166, 173
BstKTI GATC 2 cut(s) 6, 27
BstMAI GTCTC 1 cut(s) 73
BstMBI GATC 2 cut(s) 3, 24
BstMWI GCNNNNNNNGC 2 cut(s) 163, 170
BsuRI GGCC 1 cut(s) 67
BtgI CCRYGG 1 cut(s) 15
BtsCI GGATG 1 cut(s) 93
BtsIMutI CAGTG 2 cut(s) 247, 273
CciI TCATGA 1 cut(s) 250
CfoI GCGC 2 cut(s) 166, 173
CviAII CATG 3 cut(s) 127, 183, 251
CviJI RGCY 4 cut(s) 67, 112, 124, 224
CviKI_1 RGCY 4 cut(s) 67, 112, 124, 224
DdeI CTNAG 4 cut(s) 69, 219, 225, 239
DpnI GATC 2 cut(s) 5, 26
DpnII GATC 2 cut(s) 3, 24
Ecl136II GAGCTC 1 cut(s) 112
Eco147I AGGCCT 1 cut(s) 67
Eco24I GRGCYC 1 cut(s) 114
Eco53kI GAGCTC 1 cut(s) 112
Eco57I CTGAAG 1 cut(s) 63
EcoICRI GAGCTC 1 cut(s) 112
EcoRI GAATTC 1 cut(s) 131
EcoT38I GRGCYC 1 cut(s) 114
FaeI CATG 3 cut(s) 130, 186, 254
FaiI YATR 5 cut(s) 128, 184, 252, 281, 288
FatI CATG 3 cut(s) 126, 182, 250
Fnu4HI GCNGC 1 cut(s) 12
FokI GGATG 1 cut(s) 100
FriOI GRGCYC 1 cut(s) 114
Fsp4HI GCNGC 1 cut(s) 12
FspBI CTAG 2 cut(s) 63, 189
FspI TGCGCA 1 cut(s) 165
GlaI GCGC 2 cut(s) 165, 172
GluI GCNGC 1 cut(s) 12
HaeIII GGCC 1 cut(s) 67
HhaI GCGC 2 cut(s) 166, 173
Hin1II CATG 3 cut(s) 130, 186, 254
Hin6I GCGC 2 cut(s) 164, 171
HinP1I GCGC 2 cut(s) 164, 171
HphI GGTGA 1 cut(s) 31
Hpy188I TCNGA 2 cut(s) 216, 235
Hpy188III TCNNGA 2 cut(s) 251, 298
HpyAV CCTTC 1 cut(s) 168
HpyCH4III ACNGT 2 cut(s) 19, 277
HpyCH4V TGCA 1 cut(s) 93
HpyF10VI GCNNNNNNNGC 2 cut(s) 163, 170
HpyF3I CTNAG 4 cut(s) 69, 219, 225, 239
Hsp92II CATG 3 cut(s) 130, 186, 254
HspAI GCGC 2 cut(s) 164, 171
Kzo9I GATC 2 cut(s) 3, 24
LpnPI CCDG 1 cut(s) 79
MaeI CTAG 2 cut(s) 63, 189
MalI GATC 2 cut(s) 5, 26
MboI GATC 2 cut(s) 3, 24
MfeI CAATTG 1 cut(s) 198
MhlI GDGCHC 2 cut(s) 114, 247
MluCI AATT 3 cut(s) 131, 198, 210
MnlI CCTC 4 cut(s) 15, 78, 138, 214
MseI TTAA 1 cut(s) 267
MslI CAYNNNNRTG 1 cut(s) 278
MunI CAATTG 1 cut(s) 198
MwoI GCNNNNNNNGC 2 cut(s) 163, 170
NdeII GATC 2 cut(s) 3, 24
NlaIII CATG 3 cut(s) 130, 186, 254
NlaIV GGNNCC 1 cut(s) 10
NsbI TGCGCA 1 cut(s) 165
PagI TCATGA 1 cut(s) 250
PceI AGGCCT 1 cut(s) 67
PkrI GCNGC 1 cut(s) 13
Psp124BI GAGCTC 1 cut(s) 114
PspN4I GGNNCC 1 cut(s) 10
RseI CAYNNNNRTG 1 cut(s) 278
SacI GAGCTC 1 cut(s) 114
SaqAI TTAA 1 cut(s) 267
SatI GCNGC 1 cut(s) 12
Sau3AI GATC 2 cut(s) 3, 24
SduI GDGCHC 2 cut(s) 114, 247
SetI ASST 2 cut(s) 114, 149
SmiMI CAYNNNNRTG 1 cut(s) 278
SpeI ACTAGT 1 cut(s) 188
Sse9I AATT 3 cut(s) 131, 198, 210
SseBI AGGCCT 1 cut(s) 67
SsiI CCGC 1 cut(s) 12
SspMI CTAG 2 cut(s) 63, 189
SstI GAGCTC 1 cut(s) 114
StuI AGGCCT 1 cut(s) 67
TaaI ACNGT 2 cut(s) 19, 277
TaqI TCGA 1 cut(s) 114
TasI AATT 3 cut(s) 131, 198, 210
TauI GCSGC 1 cut(s) 14
Tru1I TTAA 1 cut(s) 267
Tru9I TTAA 1 cut(s) 267
TscAI CASTG 2 cut(s) 247, 280
TspDTI ATGAA 1 cut(s) 119
TspRI CASTG 2 cut(s) 247, 280
XapI RAATTY 1 cut(s) 131
XspI CTAG 2 cut(s) 63, 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.