FvH4_3g38950

repressing transcription factor binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000518
Physical Location & Seq
Reverse (-)
33197771 .. 33198124
354 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g38950.t1

Sequence Viewer

Length: 255 bp
ATGACAAAACCTGAGAGGCTGCAGTTTCTGGATCATACATTCCTGGACTTTCAAGATACAATAATGTGTCAGAAACTTCTAATGAAGATCACTGCAGCTGAACCAAGCCAGTTAATAGGAACACAGCCTCAGATGTCGAGAAGTGCTGATATTGTCGATCTTGATGAGTCCAGTGCTGCCTCTGAAGTGTGTCAACCGGAACAAACAGAGGACAGCCAAACCGTATCCTGGGGCTTGAAAACCCAAATGCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000118 GO:0000122 GO:0000228 GO:0000785 GO:0000790 GO:0000976 GO:0000977 GO:0001012 GO:0001067 GO:0001085 GO:0001103 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003682 GO:0003690 GO:0003712 GO:0003714 GO:0003824 GO:0004003 GO:0004386 GO:0004407 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005813 GO:0005815 GO:0005856 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0008026 GO:0008094 GO:0008134 GO:0008150 GO:0008152 GO:0008270 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0015630 GO:0016043 GO:0016462 GO:0016569 GO:0016570 GO:0016575 GO:0016581 GO:0016787 GO:0016810 GO:0016811 GO:0016817 GO:0016818 GO:0016887 GO:0017053 GO:0017111 GO:0019213 GO:0019219 GO:0019222 GO:0019538 GO:0019899 GO:0030334 GO:0030336 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032392 GO:0032508 GO:0032879 GO:0032991 GO:0033558 GO:0035064 GO:0035601 GO:0036211 GO:0040012 GO:0040013 GO:0042393 GO:0042623 GO:0042826 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0045892 GO:0045934 GO:0046872 GO:0046914 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051270 GO:0051271 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070035 GO:0070491 GO:0070577 GO:0070603 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0090545 GO:0090568 GO:0097159 GO:0098732 GO:0140030 GO:0140033 GO:0140034 GO:0140096 GO:0140097 GO:0140110 GO:1901363 GO:1901564 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1903756 GO:1903758 GO:1904949 GO:1990837 GO:2000112 GO:2000113 GO:2000145 GO:2000146 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_1 Agenet Jas PHD

Protein Analysis

85

Amino Acids

9.48

Weight (kDa)

4.32

Isoelectric Point (pI)

47.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000518)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21681 FvH4_3g29252 FvH4_3g38950 FvH4_3g44310 FvH4_5g29400
malus_domestica MD03G1066300.v1.1
rosa_chinensis RchiOBHm_Chr2g0087341 RchiOBHm_Chr7g0225691 RchiOBHm_Chr7g0225721 RchiOBHm_Chr7g0225751 RchiOBHm_Chr7g0225781 RchiOBHm_Chr7g0225811 RchiOBHm_Chr7g0225821 RchiOBHm_Chr7g0225841 RchiOBHm_Chr7g0225941
rosa_laevigata RLG00000001777 RLG00000001779 RLG00000001787 RLG00000001796 RLG00000015858 RLG00000018399 RLG00000030202
rosa_multiflora Rmu_co7995100.1_g000001 Rmu_sc0003367.1_g000025 Rmu_sc0004082.1_g000018 Rmu_sc0006064.1_g000002 Rmu_sc0011806.1_g000001 Rmu_sc0014642.1_g000005 Rmu_sc0014767.1_g000003 Rmu_sc0015723.1_g000001 Rmu_sc0030795.1_g000001 Rmu_sc0033647.1_g000001
rosa_roxburghii Rroxscaffold_1G00028220 Rroxscaffold_2G00089180 Rroxscaffold_2G00125860 Rroxscaffold_3G00233350 Rroxscaffold_3G00239570 Rroxscaffold_4G00325690 Rroxscaffold_5G00348560 Rroxscaffold_7G00198070
rosa_rugosa Rorug01G0045600 Rorug01G0474300.1 Rorug07G0220000 Rorug07G0220100 Rorug07G0220200 Rorug07G0220300 Rorug07G0232800 Rorug07G0233000 Rorug07G0233100 Rorug07G0233100 Rorug07G0233200 Rorug07G0233300.1
rosa_samantha Rh1AG061100 Rh1BG052200 Rh1CG063300 Rh1CG063600 Rh1DG067700 Rh2AG027900 Rh2BG027400 Rh2CG028200 Rh2DG028000 Rh7AG369700 Rh7AG370100 Rh7AG371200 Rh7AG387800 Rh7BG366500 Rh7BG366800 Rh7BG367000 Rh7BG367600 Rh7CG388600 Rh7CG389000 Rh7CG389800 Rh7CG407400 Rh7DG377400 Rh7DG377500 Rh7DG377900 Rh7DG378600 Rh7DG378700 Rh7DG378800
rosa_wichuraiana Rw0G020970 Rw0G020980 Rw1G005200 Rw2G002210 Rw7G031830 Rw7G031860 Rw7G031900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 39
AcuI CTGAAG 1 cut(s) 204
AfiI CCNNNNNNNGG 1 cut(s) 228
AgsI TTSAA 2 cut(s) 53, 238
AjnI CCWGG 2 cut(s) 42, 227
AluBI AGCT 1 cut(s) 98
AluI AGCT 1 cut(s) 98
AlwI GGATC 1 cut(s) 39
AlwNI CAGNNNCTG 1 cut(s) 28
ApeKI GCWGC 3 cut(s) 19, 95, 176
BbvI GCAGC 3 cut(s) 6, 107, 163
BciT130I CCWGG 2 cut(s) 44, 229
BciVI GTATCC 1 cut(s) 235
BfmI CTRYAG 2 cut(s) 20, 93
BfuI GTATCC 1 cut(s) 235
BisI GCNGC 3 cut(s) 20, 96, 177
BlsI GCNGC 3 cut(s) 21, 97, 178
Bme1390I CCNGG 2 cut(s) 44, 229
BmrFI CCNGG 2 cut(s) 44, 229
BsaJI CCNNGG 1 cut(s) 228
BsaWI WCCGGW 1 cut(s) 196
Bsc4I CCNNNNNNNGG 1 cut(s) 228
Bse1I ACTGG 2 cut(s) 109, 171
BseBI CCWGG 2 cut(s) 44, 229
BseDI CCNNGG 1 cut(s) 228
BseLI CCNNNNNNNGG 1 cut(s) 228
BseMII CTCAG 1 cut(s) 143
BseNI ACTGG 2 cut(s) 109, 171
BseXI GCAGC 3 cut(s) 6, 107, 163
BsiSI CCGG 1 cut(s) 197
BslI CCNNNNNNNGG 1 cut(s) 228
Bsp143I GATC 3 cut(s) 31, 87, 157
BspCNI CTCAG 2 cut(s) 4, 142
BspMAI CTGCAG 2 cut(s) 24, 97
BspPI GGATC 1 cut(s) 39
BsrI ACTGG 2 cut(s) 109, 171
BssECI CCNNGG 1 cut(s) 228
BssMI GATC 3 cut(s) 31, 87, 157
Bst2UI CCWGG 2 cut(s) 44, 229
Bst4CI ACNGT 1 cut(s) 223
BstDEI CTNAG 2 cut(s) 12, 129
BstKTI GATC 3 cut(s) 34, 90, 160
BstMBI GATC 3 cut(s) 31, 87, 157
BstNI CCWGG 2 cut(s) 44, 229
BstSCI CCNGG 2 cut(s) 42, 227
BstSFI CTRYAG 2 cut(s) 20, 93
BstV1I GCAGC 3 cut(s) 6, 107, 163
BsuI GTATCC 1 cut(s) 235
BtsI GCAGTG 1 cut(s) 90
BtsIMutI CAGTG 2 cut(s) 90, 178
CaiI CAGNNNCTG 1 cut(s) 28
CviJI RGCY 6 cut(s) 19, 98, 108, 127, 216, 234
CviKI_1 RGCY 6 cut(s) 19, 98, 108, 127, 216, 234
DdeI CTNAG 2 cut(s) 12, 129
DpnI GATC 3 cut(s) 33, 89, 159
DpnII GATC 3 cut(s) 31, 87, 157
Eco57I CTGAAG 1 cut(s) 204
EcoRII CCWGG 2 cut(s) 42, 227
FaiI YATR 1 cut(s) 36
Fnu4HI GCNGC 3 cut(s) 20, 96, 177
Fsp4HI GCNGC 3 cut(s) 20, 96, 177
GluI GCNGC 3 cut(s) 20, 96, 177
HapII CCGG 1 cut(s) 197
HincII GTYRAC 1 cut(s) 194
HindII GTYRAC 1 cut(s) 194
HinfI GANTC 1 cut(s) 167
HpaII CCGG 1 cut(s) 197
Hpy166II GTNNAC 1 cut(s) 194
Hpy188I TCNGA 3 cut(s) 72, 132, 184
Hpy188III TCNNGA 4 cut(s) 29, 53, 138, 161
Hpy8I GTNNAC 1 cut(s) 194
HpyCH4III ACNGT 1 cut(s) 223
HpyCH4V TGCA 3 cut(s) 22, 95, 250
HpyF3I CTNAG 2 cut(s) 12, 129
Kzo9I GATC 3 cut(s) 31, 87, 157
LpnPI CCDG 9 cut(s) 14, 24, 29, 56, 122, 184, 210, 214, 241
Lsp1109I GCAGC 3 cut(s) 6, 107, 163
MalI GATC 3 cut(s) 33, 89, 159
MboI GATC 3 cut(s) 31, 87, 157
MboII GAAGA 1 cut(s) 97
MlyI GAGTC 1 cut(s) 176
MnlI CCTC 4 cut(s) 9, 138, 190, 202
MseI TTAA 1 cut(s) 113
MspA1I CMGCKG 1 cut(s) 98
MspI CCGG 1 cut(s) 197
MspR9I CCNGG 2 cut(s) 44, 229
MvaI CCWGG 2 cut(s) 44, 229
NdeII GATC 3 cut(s) 31, 87, 157
PfoI TCCNGGA 1 cut(s) 42
PkrI GCNGC 3 cut(s) 21, 97, 178
PleI GAGTC 1 cut(s) 175
PpsI GAGTC 1 cut(s) 175
Psp6I CCWGG 2 cut(s) 42, 227
PspGI CCWGG 2 cut(s) 42, 227
PstI CTGCAG 2 cut(s) 24, 97
PstNI CAGNNNCTG 1 cut(s) 28
PvuII CAGCTG 1 cut(s) 98
SaqAI TTAA 1 cut(s) 113
SatI GCNGC 3 cut(s) 20, 96, 177
Sau3AI GATC 3 cut(s) 31, 87, 157
SchI GAGTC 1 cut(s) 176
ScrFI CCNGG 2 cut(s) 44, 229
SetI ASST 2 cut(s) 13, 100
SfcI CTRYAG 2 cut(s) 20, 93
StyD4I CCNGG 2 cut(s) 42, 227
TaaI ACNGT 1 cut(s) 223
TaqI TCGA 2 cut(s) 137, 156
Tru1I TTAA 1 cut(s) 113
Tru9I TTAA 1 cut(s) 113
TscAI CASTG 2 cut(s) 97, 178
TseI GCWGC 3 cut(s) 19, 95, 176
TspDTI ATGAA 1 cut(s) 98
TspRI CASTG 2 cut(s) 97, 178
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.