RchiOBHm_Chr7g0225941

repressing transcription factor binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000518
Physical Location & Seq
Forward (+)
48932457 .. 48935718
3262 bp
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UTR
Exon/CDS
Intron
PRQ20237

Sequence Viewer

Length: 150 bp
ATGATCGGTGCCGCCACGGTGAGGATCAATAAGGGAGTGGCTGAAGTGCCACTCGTGGCGACTAGGCCTCAGTTTAGGAGACTCGGTATGTGCAGGATTTTGATGAATGAGCTTGAAAATCGGCTCATGGAATTTGGCATTGAGAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000118 GO:0000228 GO:0000785 GO:0000790 GO:0001085 GO:0001103 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0004407 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005813 GO:0005815 GO:0005856 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0008026 GO:0008094 GO:0008134 GO:0008150 GO:0008152 GO:0008270 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0015630 GO:0016043 GO:0016462 GO:0016569 GO:0016570 GO:0016575 GO:0016581 GO:0016787 GO:0016810 GO:0016811 GO:0016817 GO:0016818 GO:0016887 GO:0017053 GO:0017111 GO:0019213 GO:0019219 GO:0019222 GO:0019538 GO:0019899 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032392 GO:0032508 GO:0032991 GO:0033558 GO:0035601 GO:0036211 GO:0042623 GO:0042826 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0046872 GO:0046914 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070035 GO:0070491 GO:0070603 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0090545 GO:0090568 GO:0097159 GO:0098732 GO:0140096 GO:0140097 GO:1901363 GO:1901564 GO:1902494 GO:1903506 GO:1904949 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_1 Acetyltransf_10 Agenet Jas PHD

Protein Analysis

49

Amino Acids

5.6

Weight (kDa)

10.56

Isoelectric Point (pI)

44.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IDM1_C PF23209 1 - 49 1.5e-13 Increased DNA methylation 1, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000518)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21681 FvH4_3g29252 FvH4_3g38950 FvH4_3g44310 FvH4_5g29400
malus_domestica MD03G1066300.v1.1
rosa_chinensis RchiOBHm_Chr2g0087341 RchiOBHm_Chr7g0225691 RchiOBHm_Chr7g0225721 RchiOBHm_Chr7g0225751 RchiOBHm_Chr7g0225781 RchiOBHm_Chr7g0225811 RchiOBHm_Chr7g0225821 RchiOBHm_Chr7g0225841 RchiOBHm_Chr7g0225941
rosa_laevigata RLG00000001777 RLG00000001779 RLG00000001787 RLG00000001796 RLG00000015858 RLG00000018399 RLG00000030202
rosa_multiflora Rmu_co7995100.1_g000001 Rmu_sc0003367.1_g000025 Rmu_sc0004082.1_g000018 Rmu_sc0006064.1_g000002 Rmu_sc0011806.1_g000001 Rmu_sc0014642.1_g000005 Rmu_sc0014767.1_g000003 Rmu_sc0015723.1_g000001 Rmu_sc0030795.1_g000001 Rmu_sc0033647.1_g000001
rosa_roxburghii Rroxscaffold_1G00028220 Rroxscaffold_2G00089180 Rroxscaffold_2G00125860 Rroxscaffold_3G00233350 Rroxscaffold_3G00239570 Rroxscaffold_4G00325690 Rroxscaffold_5G00348560 Rroxscaffold_7G00198070
rosa_rugosa Rorug01G0045600 Rorug01G0474300.1 Rorug07G0220000 Rorug07G0220100 Rorug07G0220200 Rorug07G0220300 Rorug07G0232800 Rorug07G0233000 Rorug07G0233100 Rorug07G0233100 Rorug07G0233200 Rorug07G0233300.1
rosa_samantha Rh1AG061100 Rh1BG052200 Rh1CG063300 Rh1CG063600 Rh1DG067700 Rh2AG027900 Rh2BG027400 Rh2CG028200 Rh2DG028000 Rh7AG369700 Rh7AG370100 Rh7AG371200 Rh7AG387800 Rh7BG366500 Rh7BG366800 Rh7BG367000 Rh7BG367600 Rh7CG388600 Rh7CG389000 Rh7CG389800 Rh7CG407400 Rh7DG377400 Rh7DG377500 Rh7DG377900 Rh7DG378600 Rh7DG378700 Rh7DG378800
rosa_wichuraiana Rw0G020970 Rw0G020980 Rw1G005200 Rw2G002210 Rw7G031830 Rw7G031860 Rw7G031900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 8
AciI CCGC 1 cut(s) 12
AclWI GGATC 1 cut(s) 32
AcsI RAATTY 1 cut(s) 131
AcuI CTGAAG 1 cut(s) 63
AfiI CCNNNNNNNGG 1 cut(s) 21
AgsI TTSAA 1 cut(s) 116
AluBI AGCT 1 cut(s) 112
AluI AGCT 1 cut(s) 112
Alw26I GTCTC 1 cut(s) 73
AlwI GGATC 1 cut(s) 32
AoxI GGCC 1 cut(s) 65
ApoI RAATTY 1 cut(s) 131
AsuHPI GGTGA 1 cut(s) 31
BanI GGYRCC 1 cut(s) 8
BauI CACGAG 1 cut(s) 53
BcoDI GTCTC 1 cut(s) 73
BfaI CTAG 1 cut(s) 63
BisI GCNGC 1 cut(s) 12
BlsI GCNGC 1 cut(s) 13
BmiI GGNNCC 1 cut(s) 10
BsaJI CCNNGG 1 cut(s) 15
BsaXI ACNNNNNCTCC 2 cut(s) 70, 100
Bsc4I CCNNNNNNNGG 1 cut(s) 21
BseDI CCNNGG 1 cut(s) 15
BseLI CCNNNNNNNGG 1 cut(s) 21
BseMII CTCAG 1 cut(s) 83
BsgI GTGCAG 1 cut(s) 112
BshFI GGCC 1 cut(s) 67
BshNI GGYRCC 1 cut(s) 8
BslI CCNNNNNNNGG 1 cut(s) 21
BsmAI GTCTC 1 cut(s) 73
BsnI GGCC 1 cut(s) 67
Bsp143I GATC 2 cut(s) 3, 24
BspACI CCGC 1 cut(s) 12
BspANI GGCC 1 cut(s) 67
BspCNI CTCAG 1 cut(s) 82
BspLI GGNNCC 1 cut(s) 10
BspPI GGATC 1 cut(s) 32
BspT107I GGYRCC 1 cut(s) 8
BssECI CCNNGG 1 cut(s) 15
BssMI GATC 2 cut(s) 3, 24
BssSI CACGAG 1 cut(s) 53
Bst2BI CACGAG 1 cut(s) 53
Bst4CI ACNGT 1 cut(s) 19
BstDEI CTNAG 1 cut(s) 69
BstDSI CCRYGG 1 cut(s) 15
BstKTI GATC 2 cut(s) 6, 27
BstMAI GTCTC 1 cut(s) 73
BstMBI GATC 2 cut(s) 3, 24
BsuRI GGCC 1 cut(s) 67
BtgI CCRYGG 1 cut(s) 15
CviAII CATG 1 cut(s) 127
CviJI RGCY 4 cut(s) 41, 67, 112, 124
CviKI_1 RGCY 4 cut(s) 41, 67, 112, 124
DdeI CTNAG 1 cut(s) 69
DpnI GATC 2 cut(s) 5, 26
DpnII GATC 2 cut(s) 3, 24
Eco147I AGGCCT 1 cut(s) 67
Eco57I CTGAAG 1 cut(s) 63
FaeI CATG 1 cut(s) 130
FaiI YATR 2 cut(s) 89, 128
FatI CATG 1 cut(s) 126
Fnu4HI GCNGC 1 cut(s) 12
Fsp4HI GCNGC 1 cut(s) 12
FspBI CTAG 1 cut(s) 63
GluI GCNGC 1 cut(s) 12
HaeIII GGCC 1 cut(s) 67
Hin1II CATG 1 cut(s) 130
HinfI GANTC 1 cut(s) 81
HphI GGTGA 1 cut(s) 31
HpyCH4III ACNGT 1 cut(s) 19
HpyCH4V TGCA 1 cut(s) 93
HpyF3I CTNAG 1 cut(s) 69
Hsp92II CATG 1 cut(s) 130
Kzo9I GATC 2 cut(s) 3, 24
LpnPI CCDG 1 cut(s) 79
MaeI CTAG 1 cut(s) 63
MalI GATC 2 cut(s) 5, 26
MboI GATC 2 cut(s) 3, 24
MluCI AATT 1 cut(s) 131
MlyI GAGTC 1 cut(s) 75
MnlI CCTC 2 cut(s) 15, 78
NdeII GATC 2 cut(s) 3, 24
NlaIII CATG 1 cut(s) 130
NlaIV GGNNCC 1 cut(s) 10
PceI AGGCCT 1 cut(s) 67
PkrI GCNGC 1 cut(s) 13
PleI GAGTC 1 cut(s) 75
PpsI GAGTC 1 cut(s) 75
PspN4I GGNNCC 1 cut(s) 10
SatI GCNGC 1 cut(s) 12
Sau3AI GATC 2 cut(s) 3, 24
SchI GAGTC 1 cut(s) 75
SetI ASST 1 cut(s) 114
SgeI CNNG 8 cut(s) 28, 65, 67, 75, 95, 106, 125, 139
Sse9I AATT 1 cut(s) 131
SseBI AGGCCT 1 cut(s) 67
SsiI CCGC 1 cut(s) 12
SspMI CTAG 1 cut(s) 63
StuI AGGCCT 1 cut(s) 67
TaaI ACNGT 1 cut(s) 19
TasI AATT 1 cut(s) 131
TauI GCSGC 1 cut(s) 14
TspDTI ATGAA 1 cut(s) 119
XapI RAATTY 1 cut(s) 131
XspI CTAG 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.