Rmu_sc0003367.1_g000025

repressing transcription factor binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003367.1
OG0000518
Physical Location & Seq
Reverse (-)
124147 .. 124989
843 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003367.1_g000025.1.cds

Sequence Viewer

Length: 843 bp
atggagatccggtactactcaccggccggaaaagtcttctactcgctccgtacagccttcaagagcgtagtttctcaaagcctcgaagtggactcaacgacgtcgtcgccttcgttctgcatgaagacttgttcatcaagaaagagaaggaagataaagatgagaacaatggaggacgtaatgaacgacgaaaggttttttctctccggcattgacaggcttttgggaaggccgagtccggtgaacggccggagcgatctttcttggactttactaaagtccgacttgaaagagaacaataatcacaacctcaagctcaaccaagccctaaaagtcatgcaccagtgttttaagccttctaaggaccctttgacccacaaagatgtagcggaggacatcattttcaatagggaaagagagttttacacagtcgttttggagaagcaagacaaggtggtcaccgccgctaatgtgaggattcatggtgtggtggcagaactgccacttatggcaactaaatttaagtaccggagacaagggatgtgcaagattttgatgaatgagattgagaactggcttagggactccgggatcgagaggcttgtcttgccttccgcacaaagcgcgctgaagacatggactagtagttcgattgggttttcgactatgactgaggatgacaaggcagatcttctcattgcttatgattgcttggatttccaggacactgttatgtgtgagaaacaactgatcttgaagaaaaatgagaacggtgatggtgaatctagtgatgaaggctctacaatatcacatgaagactacatttatggggacgatgattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000118 GO:0000228 GO:0000785 GO:0000790 GO:0001085 GO:0001103 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0004407 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005813 GO:0005815 GO:0005856 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0008026 GO:0008094 GO:0008134 GO:0008150 GO:0008152 GO:0008270 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0015630 GO:0016043 GO:0016462 GO:0016569 GO:0016570 GO:0016575 GO:0016581 GO:0016787 GO:0016810 GO:0016811 GO:0016817 GO:0016818 GO:0016887 GO:0017053 GO:0017111 GO:0019213 GO:0019219 GO:0019222 GO:0019538 GO:0019899 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032392 GO:0032508 GO:0032991 GO:0033558 GO:0035601 GO:0036211 GO:0042623 GO:0042826 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0046872 GO:0046914 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070035 GO:0070491 GO:0070603 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0090545 GO:0090568 GO:0097159 GO:0098732 GO:0140096 GO:0140097 GO:1901363 GO:1901564 GO:1902494 GO:1903506 GO:1904949 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_1 Acetyltransf_10 Agenet Jas PHD

Protein Analysis

280

Amino Acids

32.04

Weight (kDa)

6.26

Isoelectric Point (pI)

48.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000518)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21681 FvH4_3g29252 FvH4_3g38950 FvH4_3g44310 FvH4_5g29400
malus_domestica MD03G1066300.v1.1
rosa_chinensis RchiOBHm_Chr2g0087341 RchiOBHm_Chr7g0225691 RchiOBHm_Chr7g0225721 RchiOBHm_Chr7g0225751 RchiOBHm_Chr7g0225781 RchiOBHm_Chr7g0225811 RchiOBHm_Chr7g0225821 RchiOBHm_Chr7g0225841 RchiOBHm_Chr7g0225941
rosa_laevigata RLG00000001777 RLG00000001779 RLG00000001787 RLG00000001796 RLG00000015858 RLG00000018399 RLG00000030202
rosa_multiflora Rmu_co7995100.1_g000001 Rmu_sc0003367.1_g000025 Rmu_sc0004082.1_g000018 Rmu_sc0006064.1_g000002 Rmu_sc0011806.1_g000001 Rmu_sc0014642.1_g000005 Rmu_sc0014767.1_g000003 Rmu_sc0015723.1_g000001 Rmu_sc0030795.1_g000001 Rmu_sc0033647.1_g000001
rosa_roxburghii Rroxscaffold_1G00028220 Rroxscaffold_2G00089180 Rroxscaffold_2G00125860 Rroxscaffold_3G00233350 Rroxscaffold_3G00239570 Rroxscaffold_4G00325690 Rroxscaffold_5G00348560 Rroxscaffold_7G00198070
rosa_rugosa Rorug01G0045600 Rorug01G0474300.1 Rorug07G0220000 Rorug07G0220100 Rorug07G0220200 Rorug07G0220300 Rorug07G0232800 Rorug07G0233000 Rorug07G0233100 Rorug07G0233100 Rorug07G0233200 Rorug07G0233300.1
rosa_samantha Rh1AG061100 Rh1BG052200 Rh1CG063300 Rh1CG063600 Rh1DG067700 Rh2AG027900 Rh2BG027400 Rh2CG028200 Rh2DG028000 Rh7AG369700 Rh7AG370100 Rh7AG371200 Rh7AG387800 Rh7BG366500 Rh7BG366800 Rh7BG367000 Rh7BG367600 Rh7CG388600 Rh7CG389000 Rh7CG389800 Rh7CG407400 Rh7DG377400 Rh7DG377500 Rh7DG377900 Rh7DG378600 Rh7DG378700 Rh7DG378800
rosa_wichuraiana Rw0G020970 Rw0G020980 Rw1G005200 Rw2G002210 Rw7G031830 Rw7G031860 Rw7G031900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 455
AatII GACGTC 1 cut(s) 104
AccII CGCG 1 cut(s) 626
AciI CCGC 4 cut(s) 389, 462, 465, 615
AclWI GGATC 1 cut(s) 599
AcoI YGGCCR 2 cut(s) 24, 247
AcsI RAATTY 1 cut(s) 518
AcuI CTGAAG 1 cut(s) 650
AcyI GRCGYC 1 cut(s) 101
AfaI GTAC 3 cut(s) 14, 52, 527
AfiI CCNNNNNNNGG 2 cut(s) 88, 245
AgsI TTSAA 4 cut(s) 61, 289, 406, 757
AhlI ACTAGT 1 cut(s) 641
AjnI CCWGG 1 cut(s) 720
AloI GAACNNNNNNTCC 2 cut(s) 631, 663
AluBI AGCT 1 cut(s) 316
AluI AGCT 1 cut(s) 316
Alw26I GTCTC 1 cut(s) 526
AlwI GGATC 1 cut(s) 599
AoxI GGCC 3 cut(s) 24, 230, 247
ApoI RAATTY 1 cut(s) 518
ArsI GACNNNNNNTTYG 2 cut(s) 631, 663
AspLEI GCGC 2 cut(s) 626, 628
AspS9I GGNCC 1 cut(s) 364
AsuC2I CCSGG 1 cut(s) 589
AsuHPI GGTGA 5 cut(s) 12, 253, 451, 785, 791
AvaII GGWCC 1 cut(s) 364
BbsI GAAGAC 4 cut(s) 28, 131, 638, 822
BccI CCATC 1 cut(s) 770
BceAI ACGGC 1 cut(s) 262
BciT130I CCWGG 1 cut(s) 722
BcnI CCSGG 1 cut(s) 589
BcoDI GTCTC 1 cut(s) 526
BcuI ACTAGT 1 cut(s) 641
BfaI CTAG 2 cut(s) 642, 786
BglII AGATCT 1 cut(s) 688
BisI GCNGC 1 cut(s) 465
BlsI GCNGC 1 cut(s) 466
Bme1390I CCNGG 2 cut(s) 589, 722
Bme18I GGWCC 1 cut(s) 364
BmgT120I GGNCC 1 cut(s) 364
BmiI GGNNCC 1 cut(s) 366
BmrFI CCNGG 2 cut(s) 589, 722
BpiI GAAGAC 4 cut(s) 28, 131, 638, 822
Bpu10I CCTNAGC 1 cut(s) 578
BpuEI CTTGAG 1 cut(s) 296
BpuMI CCSGG 1 cut(s) 589
BsaHI GRCGYC 1 cut(s) 101
BsaWI WCCGGW 3 cut(s) 9, 238, 528
BsaXI ACNNNNNCTCC 1 cut(s) 26
Bsc4I CCNNNNNNNGG 2 cut(s) 88, 245
Bse118I RCCGGY 1 cut(s) 22
Bse1I ACTGG 2 cut(s) 343, 578
Bse3DI GCAATG 1 cut(s) 696
BseBI CCWGG 1 cut(s) 722
BseGI GGATG 2 cut(s) 546, 682
BseLI CCNNNNNNNGG 2 cut(s) 88, 245
BseMI GCAATG 1 cut(s) 696
BseMII CTCAG 1 cut(s) 663
BseNI ACTGG 2 cut(s) 343, 578
BsePI GCGCGC 1 cut(s) 624
BseX3I CGGCCG 2 cut(s) 24, 247
Bsh1236I CGCG 1 cut(s) 626
Bsh1285I CGRYCG 2 cut(s) 27, 250
BshFI GGCC 3 cut(s) 26, 232, 249
BsiEI CGRYCG 2 cut(s) 27, 250
BsiSI CCGG 8 cut(s) 10, 23, 27, 207, 239, 250, 529, 588
BslFI GGGAC 1 cut(s) 596
BslI CCNNNNNNNGG 2 cut(s) 88, 245
BsmAI GTCTC 1 cut(s) 526
BsmFI GGGAC 1 cut(s) 596
BsnI GGCC 3 cut(s) 26, 232, 249
Bsp143I GATC 5 cut(s) 6, 256, 591, 688, 750
BspACI CCGC 4 cut(s) 389, 462, 465, 615
BspANI GGCC 3 cut(s) 26, 232, 249
BspCNI CTCAG 1 cut(s) 664
BspFNI CGCG 1 cut(s) 626
BspLI GGNNCC 1 cut(s) 366
BspPI GGATC 1 cut(s) 599
BsrDI GCAATG 1 cut(s) 696
BsrFI RCCGGY 1 cut(s) 22
BsrI ACTGG 2 cut(s) 343, 578
BssAI RCCGGY 1 cut(s) 22
BssHII GCGCGC 1 cut(s) 624
BssMI GATC 5 cut(s) 6, 256, 591, 688, 750
BssNI GRCGYC 1 cut(s) 101
Bst2UI CCWGG 1 cut(s) 722
Bst4CI ACNGT 3 cut(s) 430, 730, 773
BstACI GRCGYC 1 cut(s) 101
BstC8I GCNNGC 1 cut(s) 626
BstDEI CTNAG 3 cut(s) 360, 578, 672
BstEII GGTNACC 1 cut(s) 457
BstF5I GGATG 2 cut(s) 546, 682
BstFNI CGCG 1 cut(s) 626
BstHHI GCGC 2 cut(s) 626, 628
BstKTI GATC 5 cut(s) 9, 259, 594, 691, 753
BstMAI GTCTC 1 cut(s) 526
BstMBI GATC 5 cut(s) 6, 256, 591, 688, 750
BstMCI CGRYCG 2 cut(s) 27, 250
BstMWI GCNNNNNNNGC 2 cut(s) 607, 623
BstNI CCWGG 1 cut(s) 722
BstPI GGTNACC 1 cut(s) 457
BstSCI CCNGG 2 cut(s) 587, 720
BstUI CGCG 1 cut(s) 626
BstV2I GAAGAC 4 cut(s) 28, 131, 638, 822
BstX2I RGATCY 2 cut(s) 6, 688
BstYI RGATCY 2 cut(s) 6, 688
BstZI CGGCCG 2 cut(s) 24, 247
BsuRI GGCC 3 cut(s) 26, 232, 249
BtsCI GGATG 2 cut(s) 546, 682
BtsIMutI CAGTG 2 cut(s) 350, 726
Cac8I GCNNGC 1 cut(s) 626
CfoI GCGC 2 cut(s) 626, 628
Cfr10I RCCGGY 1 cut(s) 22
Cfr13I GGNCC 1 cut(s) 364
Csp6I GTAC 3 cut(s) 13, 51, 526
CviAII CATG 5 cut(s) 121, 337, 482, 636, 812
CviQI GTAC 3 cut(s) 13, 51, 526
DdeI CTNAG 3 cut(s) 360, 578, 672
DpnI GATC 5 cut(s) 8, 258, 593, 690, 752
DpnII GATC 5 cut(s) 6, 256, 591, 688, 750
DrdI GACNNNNNNGTC 1 cut(s) 455
DseDI GACNNNNNNGTC 1 cut(s) 455
EaeI YGGCCR 2 cut(s) 24, 247
EagI CGGCCG 2 cut(s) 24, 247
EclXI CGGCCG 2 cut(s) 24, 247
Eco47I GGWCC 1 cut(s) 364
Eco52I CGGCCG 2 cut(s) 24, 247
Eco57I CTGAAG 1 cut(s) 650
Eco91I GGTNACC 1 cut(s) 457
EcoO109I RGGNCCY 1 cut(s) 364
EcoO65I GGTNACC 1 cut(s) 457
EcoRII CCWGG 1 cut(s) 720
FaeI CATG 5 cut(s) 124, 340, 485, 639, 815
FalI AAGNNNNNCTT 2 cut(s) 269, 301
FaqI GGGAC 1 cut(s) 596
FatI CATG 5 cut(s) 120, 336, 481, 635, 811
Fnu4HI GCNGC 1 cut(s) 465
FokI GGATG 2 cut(s) 553, 689
Fsp4HI GCNGC 1 cut(s) 465
FspBI CTAG 2 cut(s) 642, 786
GlaI GCGC 2 cut(s) 625, 627
GluI GCNGC 1 cut(s) 465
HaeIII GGCC 3 cut(s) 26, 232, 249
HapII CCGG 8 cut(s) 10, 23, 27, 207, 239, 250, 529, 588
HhaI GCGC 2 cut(s) 626, 628
Hin1I GRCGYC 1 cut(s) 101
Hin1II CATG 5 cut(s) 124, 340, 485, 639, 815
Hin6I GCGC 2 cut(s) 624, 626
HinP1I GCGC 2 cut(s) 624, 626
HinfI GANTC 5 cut(s) 92, 235, 478, 584, 782
HpaII CCGG 8 cut(s) 10, 23, 27, 207, 239, 250, 529, 588
HphI GGTGA 5 cut(s) 12, 253, 451, 785, 791
Hpy166II GTNNAC 2 cut(s) 91, 244
Hpy188I TCNGA 1 cut(s) 283
Hpy188III TCNNGA 4 cut(s) 61, 138, 595, 754
Hpy8I GTNNAC 2 cut(s) 91, 244
Hpy99I CGWCG 4 cut(s) 103, 106, 109, 191
HpyAV CCTTC 7 cut(s) 67, 120, 141, 222, 366, 621, 788
HpyCH4III ACNGT 3 cut(s) 430, 730, 773
HpyCH4IV ACGT 2 cut(s) 101, 177
HpyCH4V TGCA 3 cut(s) 120, 340, 546
HpyF10VI GCNNNNNNNGC 2 cut(s) 607, 623
HpyF3I CTNAG 3 cut(s) 360, 578, 672
HpySE526I ACGT 2 cut(s) 101, 177
Hsp92I GRCGYC 1 cut(s) 101
Hsp92II CATG 5 cut(s) 124, 340, 485, 639, 815
HspAI GCGC 2 cut(s) 624, 626
Kzo9I GATC 5 cut(s) 6, 256, 591, 688, 750
LmnI GCTCC 2 cut(s) 51, 252
MaeI CTAG 2 cut(s) 642, 786
MaeII ACGT 2 cut(s) 101, 177
MaeIII GTNAC 1 cut(s) 457
MalI GATC 5 cut(s) 8, 258, 593, 690, 752
MboI GATC 5 cut(s) 6, 256, 591, 688, 750
MboII GAAGA 7 cut(s) 28, 136, 163, 643, 683, 769, 827
MflI RGATCY 2 cut(s) 6, 688
MluCI AATT 1 cut(s) 518
MlyI GAGTC 3 cut(s) 86, 244, 578
MmeI TCCRAC 1 cut(s) 306
MnlI CCTC 7 cut(s) 92, 166, 320, 385, 468, 591, 667
MseI TTAA 2 cut(s) 351, 522
MslI CAYNNNNRTG 2 cut(s) 381, 731
MspI CCGG 8 cut(s) 10, 23, 27, 207, 239, 250, 529, 588
MspR9I CCNGG 2 cut(s) 589, 722
MvaI CCWGG 1 cut(s) 722
MvnI CGCG 1 cut(s) 626
MwoI GCNNNNNNNGC 2 cut(s) 607, 623
NciI CCSGG 1 cut(s) 589
NdeII GATC 5 cut(s) 6, 256, 591, 688, 750
NlaIII CATG 5 cut(s) 124, 340, 485, 639, 815
NlaIV GGNNCC 1 cut(s) 366
NmeAIII GCCGAG 1 cut(s) 258
NmuCI GTSAC 1 cut(s) 457
PauI GCGCGC 1 cut(s) 624
PcsI WCGNNNNNNNCGW 3 cut(s) 110, 183, 252
PfeI GAWTC 2 cut(s) 478, 782
PflFI GACNNNGTC 1 cut(s) 103
PfoI TCCNGGA 2 cut(s) 587, 720
PkrI GCNGC 1 cut(s) 466
PleI GAGTC 3 cut(s) 86, 243, 578
PpsI GAGTC 3 cut(s) 86, 243, 578
PpuMI RGGWCCY 1 cut(s) 364
Psp5II RGGWCCY 1 cut(s) 364
Psp6I CCWGG 1 cut(s) 720
PspEI GGTNACC 1 cut(s) 457
PspGI CCWGG 1 cut(s) 720
PspN4I GGNNCC 1 cut(s) 366
PspPI GGNCC 1 cut(s) 364
PspPPI RGGWCCY 1 cut(s) 364
PsuI RGATCY 2 cut(s) 6, 688
PsyI GACNNNGTC 1 cut(s) 103
PteI GCGCGC 1 cut(s) 624
RsaI GTAC 3 cut(s) 14, 52, 527
RsaNI GTAC 3 cut(s) 13, 51, 526
RseI CAYNNNNRTG 2 cut(s) 381, 731
SaqAI TTAA 2 cut(s) 351, 522
SatI GCNGC 1 cut(s) 465
Sau3AI GATC 5 cut(s) 6, 256, 591, 688, 750
Sau96I GGNCC 1 cut(s) 364
SchI GAGTC 3 cut(s) 86, 244, 578
ScrFI CCNGG 2 cut(s) 589, 722
SetI ASST 6 cut(s) 104, 180, 197, 312, 318, 456
SinI GGWCC 1 cut(s) 364
SmiMI CAYNNNNRTG 2 cut(s) 381, 731
SmlI CTYRAG 1 cut(s) 311
SmoI CTYRAG 1 cut(s) 311
SpeI ACTAGT 1 cut(s) 641
Sse9I AATT 1 cut(s) 518
SsiI CCGC 4 cut(s) 389, 462, 465, 615
SspMI CTAG 2 cut(s) 642, 786
StyD4I CCNGG 2 cut(s) 587, 720
TaaI ACNGT 3 cut(s) 430, 730, 773
TaiI ACGT 2 cut(s) 104, 180
TaqI TCGA 4 cut(s) 84, 594, 650, 662
TasI AATT 1 cut(s) 518
TauI GCSGC 1 cut(s) 467
TfiI GAWTC 2 cut(s) 478, 782
Tru1I TTAA 2 cut(s) 351, 522
Tru9I TTAA 2 cut(s) 351, 522
TscAI CASTG 2 cut(s) 350, 733
TseFI GTSAC 1 cut(s) 457
Tsp45I GTSAC 1 cut(s) 457
TspDTI ATGAA 7 cut(s) 123, 137, 197, 470, 572, 807, 828
TspGWI ACGGA 1 cut(s) 38
TspRI CASTG 2 cut(s) 350, 733
Tth111I GACNNNGTC 1 cut(s) 103
VpaK11BI GGWCC 1 cut(s) 364
XapI RAATTY 1 cut(s) 518
XspI CTAG 2 cut(s) 642, 786
ZraI GACGTC 1 cut(s) 102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.