Rmu_sc0004082.1_g000018

repressing transcription factor binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004082.1
OG0000518
Physical Location & Seq
Forward (+)
76984 .. 77745
762 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004082.1_g000018.1.cds

Sequence Viewer

Length: 762 bp
atgaagccgaagagagtgtgttcatctctctcagttaaacccgcctgtggtcatgaagcagtcaggtgtaggaagaataaaacgtcgtcgtcaagaggattgaaatttagaaagatggaggatatattgcaagataataggtccaagatttcgggaatcaacacccttcttgggatccctattccagtagtgggtgcgcagagcaatcttacatggagattgttgaaacctcacatgagcgttgaaaattattacggcaccaagctccattctgctctcaatgccattcacgagtgtttcgagccctctaaggacccatacaccgacagagacattgctgaggatattgtttttgatcttgagtccgagtcggagttgaacttgagagggttttacactgtggttttggagaggaatgatcatggtcatcatgaggaaatgatttgtgcggctactgtgaggatcgacagggaagtggccgaagtgccgcttgtggctactaggcctcagtttcggagacttgggatgtgccgaattctgatgaatgagcttgaaaagtggctcatggaatttggaattgagaagctggttttgccttctgcgcaaagtgcacttggtacatggaccagcaattcaatagggttttcaaagatgactgaggatgagagatcaaaatttgctacttgtcatgatttcttggattttaaggacactgttttgtgccacaaacagctcttgaagcagccaatagagtcatcatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000118 GO:0000228 GO:0000785 GO:0000790 GO:0001085 GO:0001103 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0004407 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005813 GO:0005815 GO:0005856 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0008026 GO:0008094 GO:0008134 GO:0008150 GO:0008152 GO:0008270 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0015630 GO:0016043 GO:0016462 GO:0016569 GO:0016570 GO:0016575 GO:0016581 GO:0016787 GO:0016810 GO:0016811 GO:0016817 GO:0016818 GO:0016887 GO:0017053 GO:0017111 GO:0019213 GO:0019219 GO:0019222 GO:0019538 GO:0019899 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032392 GO:0032508 GO:0032991 GO:0033558 GO:0035601 GO:0036211 GO:0042623 GO:0042826 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0046872 GO:0046914 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070035 GO:0070491 GO:0070603 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0090545 GO:0090568 GO:0097159 GO:0098732 GO:0140096 GO:0140097 GO:1901363 GO:1901564 GO:1902494 GO:1903506 GO:1904949 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_1 Acetyltransf_10 Agenet Jas PHD

Protein Analysis

253

Amino Acids

28.81

Weight (kDa)

7.62

Isoelectric Point (pI)

52.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000518)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21681 FvH4_3g29252 FvH4_3g38950 FvH4_3g44310 FvH4_5g29400
malus_domestica MD03G1066300.v1.1
rosa_chinensis RchiOBHm_Chr2g0087341 RchiOBHm_Chr7g0225691 RchiOBHm_Chr7g0225721 RchiOBHm_Chr7g0225751 RchiOBHm_Chr7g0225781 RchiOBHm_Chr7g0225811 RchiOBHm_Chr7g0225821 RchiOBHm_Chr7g0225841 RchiOBHm_Chr7g0225941
rosa_laevigata RLG00000001777 RLG00000001779 RLG00000001787 RLG00000001796 RLG00000015858 RLG00000018399 RLG00000030202
rosa_multiflora Rmu_co7995100.1_g000001 Rmu_sc0003367.1_g000025 Rmu_sc0004082.1_g000018 Rmu_sc0006064.1_g000002 Rmu_sc0011806.1_g000001 Rmu_sc0014642.1_g000005 Rmu_sc0014767.1_g000003 Rmu_sc0015723.1_g000001 Rmu_sc0030795.1_g000001 Rmu_sc0033647.1_g000001
rosa_roxburghii Rroxscaffold_1G00028220 Rroxscaffold_2G00089180 Rroxscaffold_2G00125860 Rroxscaffold_3G00233350 Rroxscaffold_3G00239570 Rroxscaffold_4G00325690 Rroxscaffold_5G00348560 Rroxscaffold_7G00198070
rosa_rugosa Rorug01G0045600 Rorug01G0474300.1 Rorug07G0220000 Rorug07G0220100 Rorug07G0220200 Rorug07G0220300 Rorug07G0232800 Rorug07G0233000 Rorug07G0233100 Rorug07G0233100 Rorug07G0233200 Rorug07G0233300.1
rosa_samantha Rh1AG061100 Rh1BG052200 Rh1CG063300 Rh1CG063600 Rh1DG067700 Rh2AG027900 Rh2BG027400 Rh2CG028200 Rh2DG028000 Rh7AG369700 Rh7AG370100 Rh7AG371200 Rh7AG387800 Rh7BG366500 Rh7BG366800 Rh7BG367000 Rh7BG367600 Rh7CG388600 Rh7CG389000 Rh7CG389800 Rh7CG407400 Rh7DG377400 Rh7DG377500 Rh7DG377900 Rh7DG378600 Rh7DG378700 Rh7DG378800
rosa_wichuraiana Rw0G020970 Rw0G020980 Rw1G005200 Rw2G002210 Rw7G031830 Rw7G031860 Rw7G031900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 198, 603
AccB1I GGYRCC 1 cut(s) 257
AciI CCGC 3 cut(s) 42, 449, 488
AclWI GGATC 3 cut(s) 169, 182, 470
AcoI YGGCCR 1 cut(s) 477
AcsI RAATTY 4 cut(s) 104, 534, 569, 674
AfaI GTAC 1 cut(s) 619
AfiI CCNNNNNNNGG 3 cut(s) 47, 171, 191
AgsI TTSAA 8 cut(s) 103, 226, 245, 379, 554, 636, 648, 739
AluBI AGCT 4 cut(s) 265, 550, 586, 733
AluI AGCT 4 cut(s) 265, 550, 586, 733
Alw21I GWGCWC 1 cut(s) 613
Alw26I GTCTC 2 cut(s) 324, 511
Alw44I GTGCAC 1 cut(s) 609
AlwI GGATC 3 cut(s) 169, 182, 470
AoxI GGCC 2 cut(s) 477, 503
ApaLI GTGCAC 1 cut(s) 609
ApeKI GCWGC 1 cut(s) 742
ApoI RAATTY 4 cut(s) 104, 534, 569, 674
AspLEI GCGC 2 cut(s) 199, 604
AspS9I GGNCC 3 cut(s) 141, 313, 624
AvaII GGWCC 3 cut(s) 141, 313, 624
BaeGI GKGCMC 1 cut(s) 613
BamHI GGATCC 1 cut(s) 174
BanI GGYRCC 1 cut(s) 257
BanII GRGCYC 1 cut(s) 306
BauI CACGAG 1 cut(s) 290
Bbv12I GWGCWC 1 cut(s) 613
BbvCI CCTCAGC 1 cut(s) 339
BbvI GCAGC 1 cut(s) 754
BccI CCATC 1 cut(s) 109
BceAI ACGGC 1 cut(s) 271
BclI TGATCA 1 cut(s) 418
BcoDI GTCTC 2 cut(s) 324, 511
BfaI CTAG 1 cut(s) 501
BisI GCNGC 3 cut(s) 450, 488, 743
BlsI GCNGC 3 cut(s) 451, 489, 744
Bme18I GGWCC 3 cut(s) 141, 313, 624
BmgT120I GGNCC 3 cut(s) 141, 313, 624
BmiI GGNNCC 3 cut(s) 176, 259, 315
Bpu10I CCTNAGC 1 cut(s) 339
BpuEI CTTGAG 2 cut(s) 380, 403
Bsc4I CCNNNNNNNGG 3 cut(s) 47, 171, 191
Bse1I ACTGG 1 cut(s) 185
Bse3DI GCAATG 1 cut(s) 333
BseGI GGATG 2 cut(s) 531, 667
BseLI CCNNNNNNNGG 3 cut(s) 47, 171, 191
BseMI GCAATG 1 cut(s) 333
BseMII CTCAG 4 cut(s) 45, 330, 521, 648
BseNI ACTGG 1 cut(s) 185
BseSI GKGCMC 1 cut(s) 613
BseXI GCAGC 1 cut(s) 754
BshFI GGCC 2 cut(s) 479, 505
BshNI GGYRCC 1 cut(s) 257
BsiHKAI GWGCWC 1 cut(s) 613
BslI CCNNNNNNNGG 3 cut(s) 47, 171, 191
BsmAI GTCTC 2 cut(s) 324, 511
BsnI GGCC 2 cut(s) 479, 505
Bsp1286I GDGCHC 2 cut(s) 306, 613
Bsp143I GATC 5 cut(s) 174, 355, 418, 462, 668
BspACI CCGC 3 cut(s) 42, 449, 488
BspANI GGCC 2 cut(s) 479, 505
BspCNI CTCAG 4 cut(s) 44, 331, 520, 649
BspHI TCATGA 4 cut(s) 52, 430, 688, 758
BspLI GGNNCC 3 cut(s) 176, 259, 315
BspPI GGATC 3 cut(s) 169, 182, 470
BspT107I GGYRCC 1 cut(s) 257
BsrDI GCAATG 1 cut(s) 333
BsrI ACTGG 1 cut(s) 185
BssMI GATC 5 cut(s) 174, 355, 418, 462, 668
BssSI CACGAG 1 cut(s) 290
Bst2BI CACGAG 1 cut(s) 290
Bst4CI ACNGT 3 cut(s) 400, 457, 715
Bst6I CTCTTC 1 cut(s) 5
BstDEI CTNAG 5 cut(s) 31, 309, 339, 507, 657
BstF5I GGATG 2 cut(s) 531, 667
BstHHI GCGC 2 cut(s) 199, 604
BstKTI GATC 5 cut(s) 177, 358, 421, 465, 671
BstMAI GTCTC 2 cut(s) 324, 511
BstMBI GATC 5 cut(s) 174, 355, 418, 462, 668
BstMWI GCNNNNNNNGC 5 cut(s) 281, 592, 601, 608, 739
BstSLI GKGCMC 1 cut(s) 613
BstV1I GCAGC 1 cut(s) 754
BstX2I RGATCY 1 cut(s) 174
BstYI RGATCY 1 cut(s) 174
BsuRI GGCC 2 cut(s) 479, 505
BtsCI GGATG 2 cut(s) 531, 667
BtsIMutI CAGTG 2 cut(s) 396, 711
CciI TCATGA 4 cut(s) 52, 430, 688, 758
CfoI GCGC 2 cut(s) 199, 604
Cfr13I GGNCC 3 cut(s) 141, 313, 624
Csp6I GTAC 1 cut(s) 618
CviAII CATG 9 cut(s) 53, 213, 235, 422, 431, 565, 621, 689, 759
CviQI GTAC 1 cut(s) 618
DdeI CTNAG 5 cut(s) 31, 309, 339, 507, 657
DpnI GATC 5 cut(s) 176, 357, 420, 464, 670
DpnII GATC 5 cut(s) 174, 355, 418, 462, 668
EaeI YGGCCR 1 cut(s) 477
Eam1104I CTCTTC 1 cut(s) 5
EarI CTCTTC 1 cut(s) 5
Eco147I AGGCCT 1 cut(s) 505
Eco24I GRGCYC 1 cut(s) 306
Eco47I GGWCC 3 cut(s) 141, 313, 624
EcoO109I RGGNCCY 1 cut(s) 313
EcoRI GAATTC 1 cut(s) 534
EcoT38I GRGCYC 1 cut(s) 306
FaeI CATG 9 cut(s) 56, 216, 238, 425, 434, 568, 624, 692, 762
FalI AAGNNNNNCTT 2 cut(s) 474, 506
FatI CATG 9 cut(s) 52, 212, 234, 421, 430, 564, 620, 688, 758
FauI CCCGC 1 cut(s) 49
FbaI TGATCA 1 cut(s) 418
Fnu4HI GCNGC 3 cut(s) 450, 488, 743
FokI GGATG 2 cut(s) 538, 674
FriOI GRGCYC 1 cut(s) 306
Fsp4HI GCNGC 3 cut(s) 450, 488, 743
FspBI CTAG 1 cut(s) 501
FspI TGCGCA 2 cut(s) 198, 603
GlaI GCGC 2 cut(s) 198, 603
GluI GCNGC 3 cut(s) 450, 488, 743
HaeIII GGCC 2 cut(s) 479, 505
HhaI GCGC 2 cut(s) 199, 604
Hin1II CATG 9 cut(s) 56, 216, 238, 425, 434, 568, 624, 692, 762
Hin6I GCGC 2 cut(s) 197, 602
HinP1I GCGC 2 cut(s) 197, 602
HinfI GANTC 4 cut(s) 156, 362, 368, 752
Hpy166II GTNNAC 1 cut(s) 611
Hpy188I TCNGA 4 cut(s) 367, 373, 516, 540
Hpy188III TCNNGA 9 cut(s) 53, 93, 153, 290, 359, 431, 689, 736, 759
Hpy8I GTNNAC 1 cut(s) 611
Hpy99I CGWCG 2 cut(s) 88, 91
HpyAV CCTTC 2 cut(s) 176, 606
HpyCH4III ACNGT 3 cut(s) 400, 457, 715
HpyCH4IV ACGT 1 cut(s) 83
HpyCH4V TGCA 2 cut(s) 130, 611
HpyF10VI GCNNNNNNNGC 5 cut(s) 281, 592, 601, 608, 739
HpyF3I CTNAG 5 cut(s) 31, 309, 339, 507, 657
HpySE526I ACGT 1 cut(s) 83
Hsp92II CATG 9 cut(s) 56, 216, 238, 425, 434, 568, 624, 692, 762
HspAI GCGC 2 cut(s) 197, 602
Ksp22I TGATCA 1 cut(s) 418
Kzo9I GATC 5 cut(s) 174, 355, 418, 462, 668
LmnI GCTCC 1 cut(s) 270
LpnPI CCDG 6 cut(s) 49, 58, 198, 454, 572, 640
Lsp1109I GCAGC 1 cut(s) 754
MaeI CTAG 1 cut(s) 501
MaeII ACGT 1 cut(s) 83
MalI GATC 5 cut(s) 176, 357, 420, 464, 670
MboI GATC 5 cut(s) 174, 355, 418, 462, 668
MboII GAAGA 2 cut(s) 22, 85
MflI RGATCY 1 cut(s) 174
MhlI GDGCHC 2 cut(s) 306, 613
MluCI AATT 7 cut(s) 104, 247, 534, 569, 576, 631, 674
MlyI GAGTC 3 cut(s) 371, 377, 761
MmeI TCCRAC 1 cut(s) 351
MseI TTAA 2 cut(s) 36, 705
MwoI GCNNNNNNNGC 5 cut(s) 281, 592, 601, 608, 739
NdeII GATC 5 cut(s) 174, 355, 418, 462, 668
NlaIII CATG 9 cut(s) 56, 216, 238, 425, 434, 568, 624, 692, 762
NlaIV GGNNCC 3 cut(s) 176, 259, 315
NsbI TGCGCA 2 cut(s) 198, 603
PagI TCATGA 4 cut(s) 52, 430, 688, 758
PceI AGGCCT 1 cut(s) 505
PcsI WCGNNNNNNNCGW 1 cut(s) 297
PfeI GAWTC 1 cut(s) 156
PkrI GCNGC 3 cut(s) 451, 489, 744
PleI GAGTC 3 cut(s) 370, 376, 760
PpsI GAGTC 3 cut(s) 370, 376, 760
PpuMI RGGWCCY 1 cut(s) 313
Psp5II RGGWCCY 1 cut(s) 313
PspN4I GGNNCC 3 cut(s) 176, 259, 315
PspPI GGNCC 3 cut(s) 141, 313, 624
PspPPI RGGWCCY 1 cut(s) 313
PsuI RGATCY 1 cut(s) 174
RsaI GTAC 1 cut(s) 619
RsaNI GTAC 1 cut(s) 618
SaqAI TTAA 2 cut(s) 36, 705
SatI GCNGC 3 cut(s) 450, 488, 743
Sau3AI GATC 5 cut(s) 174, 355, 418, 462, 668
Sau96I GGNCC 3 cut(s) 141, 313, 624
SchI GAGTC 3 cut(s) 371, 377, 761
SduI GDGCHC 2 cut(s) 306, 613
SetI ASST 8 cut(s) 68, 86, 143, 232, 267, 552, 588, 735
SinI GGWCC 3 cut(s) 141, 313, 624
SmlI CTYRAG 2 cut(s) 359, 382
SmoI CTYRAG 2 cut(s) 359, 382
Sse9I AATT 7 cut(s) 104, 247, 534, 569, 576, 631, 674
SseBI AGGCCT 1 cut(s) 505
SsiI CCGC 3 cut(s) 42, 449, 488
SspMI CTAG 1 cut(s) 501
StuI AGGCCT 1 cut(s) 505
TaaI ACNGT 3 cut(s) 400, 457, 715
TaiI ACGT 1 cut(s) 86
TaqI TCGA 2 cut(s) 300, 465
TasI AATT 7 cut(s) 104, 247, 534, 569, 576, 631, 674
TauI GCSGC 2 cut(s) 452, 490
TfiI GAWTC 1 cut(s) 156
Tru1I TTAA 2 cut(s) 36, 705
Tru9I TTAA 2 cut(s) 36, 705
TscAI CASTG 2 cut(s) 403, 718
TseI GCWGC 1 cut(s) 742
TspDTI ATGAA 4 cut(s) 12, 17, 69, 557
TspRI CASTG 2 cut(s) 403, 718
VneI GTGCAC 1 cut(s) 609
VpaK11BI GGWCC 3 cut(s) 141, 313, 624
XapI RAATTY 4 cut(s) 104, 534, 569, 674
XspI CTAG 1 cut(s) 501
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.