Rroxscaffold_2G00089180

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000518
Physical Location & Seq
Forward (+)
11079849 .. 11080774
926 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00089180.1

Sequence Viewer

Length: 534 bp
ATGGATCCGGGGTCGGTGCTCAAACCCGATTCCGTCATCACCATCTACGACCTCAAGCCATTTGACCTGCGACCTGGATCCGAACTGTTGACGAGAACGAGTCGGCCCCGGAAACTCGGAGGAGCCGTCCAACTTGACAGACCGATCGTGGCTCGGCGCCACCGGCAAGACCCGGGCGAGATCGCGAGCTTATCACCCAACCGGAGGCTCAAAACCCGAACTCGCTCTATCATAGTGTGGTGGAATGCTCACTTGCTCGTGGTCGGAGACCACGAGGACCGGAATGATCTGTCGGGCACTTTTCATGTTGATGCCGGTTCTGTTTCTAAGAAGGATCAAGCGACCATTCGGATCGCTTTGTTGGCCAGCTTGATTTCGAAGGAAAATGAGGATGACGGGGAGTTGAATGGGCCGGTCAATGAAGGGCTGTGGCTGTACTCGGAGAGGAGAGATGAAGATGATGGTCATGTGGAGATGATCGGTGCCGCCACGGTGAGGATCTTCAAGGTGAGGCTGAAGTGCCACTTGTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

177

Amino Acids

19.95

Weight (kDa)

7.94

Isoelectric Point (pI)

40.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000518)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21681 FvH4_3g29252 FvH4_3g38950 FvH4_3g44310 FvH4_5g29400
malus_domestica MD03G1066300.v1.1
rosa_chinensis RchiOBHm_Chr2g0087341 RchiOBHm_Chr7g0225691 RchiOBHm_Chr7g0225721 RchiOBHm_Chr7g0225751 RchiOBHm_Chr7g0225781 RchiOBHm_Chr7g0225811 RchiOBHm_Chr7g0225821 RchiOBHm_Chr7g0225841 RchiOBHm_Chr7g0225941
rosa_laevigata RLG00000001777 RLG00000001779 RLG00000001787 RLG00000001796 RLG00000015858 RLG00000018399 RLG00000030202
rosa_multiflora Rmu_co7995100.1_g000001 Rmu_sc0003367.1_g000025 Rmu_sc0004082.1_g000018 Rmu_sc0006064.1_g000002 Rmu_sc0011806.1_g000001 Rmu_sc0014642.1_g000005 Rmu_sc0014767.1_g000003 Rmu_sc0015723.1_g000001 Rmu_sc0030795.1_g000001 Rmu_sc0033647.1_g000001
rosa_roxburghii Rroxscaffold_1G00028220 Rroxscaffold_2G00089180 Rroxscaffold_2G00125860 Rroxscaffold_3G00233350 Rroxscaffold_3G00239570 Rroxscaffold_4G00325690 Rroxscaffold_5G00348560 Rroxscaffold_7G00198070
rosa_rugosa Rorug01G0045600 Rorug01G0474300.1 Rorug07G0220000 Rorug07G0220100 Rorug07G0220200 Rorug07G0220300 Rorug07G0232800 Rorug07G0233000 Rorug07G0233100 Rorug07G0233100 Rorug07G0233200 Rorug07G0233300.1
rosa_samantha Rh1AG061100 Rh1BG052200 Rh1CG063300 Rh1CG063600 Rh1DG067700 Rh2AG027900 Rh2BG027400 Rh2CG028200 Rh2DG028000 Rh7AG369700 Rh7AG370100 Rh7AG371200 Rh7AG387800 Rh7BG366500 Rh7BG366800 Rh7BG367000 Rh7BG367600 Rh7CG388600 Rh7CG389000 Rh7CG389800 Rh7CG407400 Rh7DG377400 Rh7DG377500 Rh7DG377900 Rh7DG378600 Rh7DG378700 Rh7DG378800
rosa_wichuraiana Rw0G020970 Rw0G020980 Rw1G005200 Rw2G002210 Rw7G031830 Rw7G031860 Rw7G031900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 75
AccB1I GGYRCC 2 cut(s) 156, 482
AccII CGCG 1 cut(s) 185
AciI CCGC 1 cut(s) 486
AclWI GGATC 6 cut(s) 12, 72, 85, 342, 359, 506
AcoI YGGCCR 1 cut(s) 363
AcyI GRCGYC 1 cut(s) 157
AfaI GTAC 1 cut(s) 437
AfiI CCNNNNNNNGG 2 cut(s) 204, 495
AgsI TTSAA 2 cut(s) 406, 505
AjnI CCWGG 1 cut(s) 73
AluBI AGCT 2 cut(s) 189, 369
AluI AGCT 2 cut(s) 189, 369
Alw21I GWGCWC 1 cut(s) 21
Alw26I GTCTC 1 cut(s) 261
AlwI GGATC 6 cut(s) 12, 72, 85, 342, 359, 506
Ama87I CYCGRG 1 cut(s) 172
AoxI GGCC 3 cut(s) 104, 363, 410
AspLEI GCGC 1 cut(s) 159
AspS9I GGNCC 3 cut(s) 105, 277, 410
AsuC2I CCSGG 4 cut(s) 9, 109, 173, 174
AsuHPI GGTGA 4 cut(s) 31, 186, 505, 520
AsuII TTCGAA 1 cut(s) 377
AvaI CYCGRG 1 cut(s) 172
AvaII GGWCC 1 cut(s) 277
BaeGI GKGCMC 1 cut(s) 299
BalI TGGCCA 1 cut(s) 365
BamHI GGATCC 2 cut(s) 4, 77
BanI GGYRCC 2 cut(s) 156, 482
BauI CACGAG 2 cut(s) 257, 272
Bbv12I GWGCWC 1 cut(s) 21
BccI CCATC 2 cut(s) 50, 455
BceAI ACGGC 1 cut(s) 110
BciT130I CCWGG 1 cut(s) 75
BcnI CCSGG 4 cut(s) 9, 109, 173, 174
BcoDI GTCTC 1 cut(s) 261
BfoI RGCGCY 1 cut(s) 160
BfuAI ACCTGC 1 cut(s) 75
BisI GCNGC 1 cut(s) 486
BlsI GCNGC 1 cut(s) 487
Bme1390I CCNGG 5 cut(s) 9, 75, 109, 173, 174
Bme18I GGWCC 1 cut(s) 277
BmeT110I CYCGRG 1 cut(s) 172
BmgT120I GGNCC 3 cut(s) 105, 277, 410
BmiI GGNNCC 6 cut(s) 6, 79, 107, 124, 158, 484
BmrFI CCNGG 5 cut(s) 9, 75, 109, 173, 174
BmsI GCATC 1 cut(s) 301
Bpu14I TTCGAA 1 cut(s) 377
BpuEI CTTGAG 1 cut(s) 38
BpuMI CCSGG 4 cut(s) 9, 109, 173, 174
BsaHI GRCGYC 1 cut(s) 157
BsaI GGTCTC 1 cut(s) 261
BsaJI CCNNGG 4 cut(s) 8, 107, 172, 489
BsaWI WCCGGW 2 cut(s) 201, 279
BsaXI ACNNNNNCTCC 2 cut(s) 111, 141
Bsc4I CCNNNNNNNGG 2 cut(s) 204, 495
Bse118I RCCGGY 3 cut(s) 162, 314, 412
BseBI CCWGG 1 cut(s) 75
BseDI CCNNGG 4 cut(s) 8, 107, 172, 489
BseGI GGATG 1 cut(s) 397
BseLI CCNNNNNNNGG 2 cut(s) 204, 495
BseRI GAGGAG 2 cut(s) 135, 460
BseSI GKGCMC 1 cut(s) 299
Bsh1236I CGCG 1 cut(s) 185
Bsh1285I CGRYCG 1 cut(s) 147
BshFI GGCC 3 cut(s) 106, 365, 412
BshNI GGYRCC 2 cut(s) 156, 482
BsiEI CGRYCG 1 cut(s) 147
BsiHKAI GWGCWC 1 cut(s) 21
BsiHKCI CYCGRG 1 cut(s) 172
BsiSI CCGG 8 cut(s) 8, 109, 163, 173, 202, 280, 315, 413
BslI CCNNNNNNNGG 2 cut(s) 204, 495
BsmAI GTCTC 1 cut(s) 261
BsmI GAATGC 1 cut(s) 250
BsnI GGCC 3 cut(s) 106, 365, 412
Bso31I GGTCTC 1 cut(s) 261
BsoBI CYCGRG 1 cut(s) 172
Bsp119I TTCGAA 1 cut(s) 377
Bsp1286I GDGCHC 2 cut(s) 21, 299
Bsp143I GATC 9 cut(s) 4, 77, 144, 180, 286, 334, 351, 477, 498
Bsp68I TCGCGA 1 cut(s) 185
BspACI CCGC 1 cut(s) 486
BspANI GGCC 3 cut(s) 106, 365, 412
BspFNI CGCG 1 cut(s) 185
BspLI GGNNCC 6 cut(s) 6, 79, 107, 124, 158, 484
BspMI ACCTGC 1 cut(s) 75
BspPI GGATC 6 cut(s) 12, 72, 85, 342, 359, 506
BspT104I TTCGAA 1 cut(s) 377
BspT107I GGYRCC 2 cut(s) 156, 482
BspTNI GGTCTC 1 cut(s) 261
BsrFI RCCGGY 3 cut(s) 162, 314, 412
BssAI RCCGGY 3 cut(s) 162, 314, 412
BssECI CCNNGG 4 cut(s) 8, 107, 172, 489
BssMI GATC 9 cut(s) 4, 77, 144, 180, 286, 334, 351, 477, 498
BssNI GRCGYC 1 cut(s) 157
BssSI CACGAG 2 cut(s) 257, 272
Bst2BI CACGAG 2 cut(s) 257, 272
Bst2UI CCWGG 1 cut(s) 75
Bst4CI ACNGT 2 cut(s) 87, 493
BstACI GRCGYC 1 cut(s) 157
BstBI TTCGAA 1 cut(s) 377
BstC8I GCNNGC 2 cut(s) 187, 367
BstDEI CTNAG 1 cut(s) 327
BstDSI CCRYGG 1 cut(s) 489
BstF5I GGATG 1 cut(s) 397
BstFNI CGCG 1 cut(s) 185
BstH2I RGCGCY 1 cut(s) 160
BstHHI GCGC 1 cut(s) 159
BstKTI GATC 9 cut(s) 7, 80, 147, 183, 289, 337, 354, 480, 501
BstMAI GTCTC 1 cut(s) 261
BstMBI GATC 9 cut(s) 4, 77, 144, 180, 286, 334, 351, 477, 498
BstMCI CGRYCG 1 cut(s) 147
BstMWI GCNNNNNNNGC 2 cut(s) 163, 362
BstNI CCWGG 1 cut(s) 75
BstSCI CCNGG 5 cut(s) 7, 73, 107, 171, 172
BstSLI GKGCMC 1 cut(s) 299
BstUI CGCG 1 cut(s) 185
BstX2I RGATCY 3 cut(s) 4, 77, 498
BstYI RGATCY 3 cut(s) 4, 77, 498
BsuRI GGCC 3 cut(s) 106, 365, 412
BtgI CCRYGG 1 cut(s) 489
BtsCI GGATG 1 cut(s) 397
BtuMI TCGCGA 1 cut(s) 185
BveI ACCTGC 1 cut(s) 75
Cac8I GCNNGC 2 cut(s) 187, 367
CfoI GCGC 1 cut(s) 159
Cfr10I RCCGGY 3 cut(s) 162, 314, 412
Cfr13I GGNCC 3 cut(s) 105, 277, 410
Cfr9I CCCGGG 1 cut(s) 172
Csp6I GTAC 1 cut(s) 436
CviAII CATG 2 cut(s) 305, 467
CviQI GTAC 1 cut(s) 436
DdeI CTNAG 1 cut(s) 327
DinI GGCGCC 1 cut(s) 158
DpnI GATC 9 cut(s) 6, 79, 146, 182, 288, 336, 353, 479, 500
DpnII GATC 9 cut(s) 4, 77, 144, 180, 286, 334, 351, 477, 498
EaeI YGGCCR 1 cut(s) 363
Eco31I GGTCTC 1 cut(s) 261
Eco47I GGWCC 1 cut(s) 277
Eco88I CYCGRG 1 cut(s) 172
EcoRII CCWGG 1 cut(s) 73
EgeI GGCGCC 1 cut(s) 158
EheI GGCGCC 1 cut(s) 158
FaeI CATG 2 cut(s) 308, 470
FaiI YATR 3 cut(s) 233, 306, 468
FalI AAGNNNNNCTT 1 cut(s) 509
FatI CATG 2 cut(s) 304, 466
Fnu4HI GCNGC 1 cut(s) 486
FokI GGATG 1 cut(s) 404
Fsp4HI GCNGC 1 cut(s) 486
GlaI GCGC 1 cut(s) 158
GluI GCNGC 1 cut(s) 486
HaeII RGCGCY 1 cut(s) 160
HaeIII GGCC 3 cut(s) 106, 365, 412
HapII CCGG 8 cut(s) 8, 109, 163, 173, 202, 280, 315, 413
HhaI GCGC 1 cut(s) 159
Hin1I GRCGYC 1 cut(s) 157
Hin1II CATG 2 cut(s) 308, 470
Hin6I GCGC 1 cut(s) 157
HinP1I GCGC 1 cut(s) 157
HincII GTYRAC 1 cut(s) 90
HindII GTYRAC 1 cut(s) 90
HinfI GANTC 2 cut(s) 29, 100
HpaII CCGG 8 cut(s) 8, 109, 163, 173, 202, 280, 315, 413
HphI GGTGA 4 cut(s) 31, 186, 505, 520
Hpy166II GTNNAC 1 cut(s) 90
Hpy188I TCNGA 5 cut(s) 82, 119, 266, 351, 442
Hpy188III TCNNGA 1 cut(s) 184
Hpy8I GTNNAC 1 cut(s) 90
HpyAV CCTTC 3 cut(s) 325, 373, 416
HpyCH4III ACNGT 2 cut(s) 87, 493
HpyF10VI GCNNNNNNNGC 2 cut(s) 163, 362
HpyF3I CTNAG 1 cut(s) 327
Hsp92I GRCGYC 1 cut(s) 157
Hsp92II CATG 2 cut(s) 308, 470
HspAI GCGC 1 cut(s) 157
KasI GGCGCC 1 cut(s) 156
Kzo9I GATC 9 cut(s) 4, 77, 144, 180, 286, 334, 351, 477, 498
LmnI GCTCC 1 cut(s) 122
LweI GCATC 1 cut(s) 301
MalI GATC 9 cut(s) 6, 79, 146, 182, 288, 336, 353, 479, 500
MboI GATC 9 cut(s) 4, 77, 144, 180, 286, 334, 351, 477, 498
MboII GAAGA 2 cut(s) 467, 493
MflI RGATCY 3 cut(s) 4, 77, 498
MhlI GDGCHC 2 cut(s) 21, 299
MlsI TGGCCA 1 cut(s) 365
MluNI TGGCCA 1 cut(s) 365
Mly113I GGCGCC 1 cut(s) 157
MlyI GAGTC 1 cut(s) 109
MmeI TCCRAC 2 cut(s) 154, 244
MnlI CCTC 8 cut(s) 62, 113, 198, 268, 382, 438, 489, 504
Mox20I TGGCCA 1 cut(s) 365
MscI TGGCCA 1 cut(s) 365
MslI CAYNNNNRTG 1 cut(s) 309
Msp20I TGGCCA 1 cut(s) 365
MspI CCGG 8 cut(s) 8, 109, 163, 173, 202, 280, 315, 413
MspR9I CCNGG 5 cut(s) 9, 75, 109, 173, 174
Mva1269I GAATGC 1 cut(s) 250
MvaI CCWGG 1 cut(s) 75
MvnI CGCG 1 cut(s) 185
MwoI GCNNNNNNNGC 2 cut(s) 163, 362
NarI GGCGCC 1 cut(s) 157
NciI CCSGG 4 cut(s) 9, 109, 173, 174
NdeII GATC 9 cut(s) 4, 77, 144, 180, 286, 334, 351, 477, 498
NlaIII CATG 2 cut(s) 308, 470
NlaIV GGNNCC 6 cut(s) 6, 79, 107, 124, 158, 484
NmeAIII GCCGAG 1 cut(s) 133
NruI TCGCGA 1 cut(s) 185
NspV TTCGAA 1 cut(s) 377
PcsI WCGNNNNNNNCGW 2 cut(s) 123, 270
PctI GAATGC 1 cut(s) 250
PfeI GAWTC 1 cut(s) 29
PkrI GCNGC 1 cut(s) 487
Ple19I CGATCG 1 cut(s) 147
PleI GAGTC 1 cut(s) 108
PluTI GGCGCC 1 cut(s) 160
PpsI GAGTC 1 cut(s) 108
Psp6I CCWGG 1 cut(s) 73
PspGI CCWGG 1 cut(s) 73
PspN4I GGNNCC 6 cut(s) 6, 79, 107, 124, 158, 484
PspPI GGNCC 3 cut(s) 105, 277, 410
PsuI RGATCY 3 cut(s) 4, 77, 498
PvuI CGATCG 1 cut(s) 147
RruI TCGCGA 1 cut(s) 185
RsaI GTAC 1 cut(s) 437
RsaNI GTAC 1 cut(s) 436
RseI CAYNNNNRTG 1 cut(s) 309
SatI GCNGC 1 cut(s) 486
Sau3AI GATC 9 cut(s) 4, 77, 144, 180, 286, 334, 351, 477, 498
Sau96I GGNCC 3 cut(s) 105, 277, 410
SchI GAGTC 1 cut(s) 109
ScrFI CCNGG 5 cut(s) 9, 75, 109, 173, 174
SduI GDGCHC 2 cut(s) 21, 299
SetI ASST 6 cut(s) 54, 69, 76, 191, 371, 510
SfaNI GCATC 1 cut(s) 301
SfoI GGCGCC 1 cut(s) 158
SfuI TTCGAA 1 cut(s) 377
SinI GGWCC 1 cut(s) 277
SmaI CCCGGG 1 cut(s) 174
SmiMI CAYNNNNRTG 1 cut(s) 309
SmlI CTYRAG 1 cut(s) 53
SmoI CTYRAG 1 cut(s) 53
SsiI CCGC 1 cut(s) 486
SspDI GGCGCC 1 cut(s) 156
StyD4I CCNGG 5 cut(s) 7, 73, 107, 171, 172
TaaI ACNGT 2 cut(s) 87, 493
TaqI TCGA 1 cut(s) 377
TaqII GACCGA 1 cut(s) 157
TatI WGTACW 1 cut(s) 435
TauI GCSGC 1 cut(s) 488
TfiI GAWTC 1 cut(s) 29
TspDTI ATGAA 3 cut(s) 293, 435, 468
TspGWI ACGGA 1 cut(s) 22
TspMI CCCGGG 1 cut(s) 172
VpaK11BI GGWCC 1 cut(s) 277
XmaI CCCGGG 1 cut(s) 172
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.