Rmu_sc0014767.1_g000003

repressing transcription factor binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0014767.1
OG0000518
Physical Location & Seq
Forward (+)
24004 .. 24816
813 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0014767.1_g000003.1.cds

Sequence Viewer

Length: 813 bp
atgaagcggaagcgggcctttactatggcttcgtcatcgtcgtctaccgtgaaaccctcgcgcttccctgaagaagaatcagtccggtgttgggagagcaaaacggcgtcgtcaaacagaacccgaccccaaatccaatccagatcaagaagaggatcgaaaacaagaaacatcaatgatgtcttaaaagatgaaagatccaagatttctgggatcaaccggattttggggacacccattcccgtgagcaataacctgacatggaggcttttgaaatctcacatgcgaattgaatctttttactgcaccaagctccactccgctctcaatgccatccacgagtgtttcgagccttccaaagacccctacaccaacagagacattgctgaggacattgtcttcgacttggaatccgattccgagttgaatttgagagggttttacactgtggttttggagaggagggatgatgatgatggtcatgaggagatggtcggtgccgccacggtgaggatcaataagggagtggctgaagtgcccctcgtggcgactaggcctcagtttaggagacttgggatgtgcaggattttgatgaatcagctcgaaaatcggctcatggaattcggcattgagaggttagtcttgccttctgtgcaaagcgcactcaatacatggactagtagttcaattgggttttcaatgatgagtgaggctgagatatcagagctcagcgctcatcatgagttcttggattttaaggacactgttatgtgccataaaatactcttgaagcacccaatagtctcactgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000118 GO:0000228 GO:0000785 GO:0000790 GO:0001085 GO:0001103 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0004407 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005813 GO:0005815 GO:0005856 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0008026 GO:0008094 GO:0008134 GO:0008150 GO:0008152 GO:0008270 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0015630 GO:0016043 GO:0016462 GO:0016569 GO:0016570 GO:0016575 GO:0016581 GO:0016787 GO:0016810 GO:0016811 GO:0016817 GO:0016818 GO:0016887 GO:0017053 GO:0017111 GO:0019213 GO:0019219 GO:0019222 GO:0019538 GO:0019899 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032392 GO:0032508 GO:0032991 GO:0033558 GO:0035601 GO:0036211 GO:0042623 GO:0042826 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0046872 GO:0046914 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070035 GO:0070491 GO:0070603 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0090545 GO:0090568 GO:0097159 GO:0098732 GO:0140096 GO:0140097 GO:1901363 GO:1901564 GO:1902494 GO:1903506 GO:1904949 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_1 Acetyltransf_10 Agenet Jas PHD

Protein Analysis

270

Amino Acids

30.86

Weight (kDa)

8.81

Isoelectric Point (pI)

61.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000518)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21681 FvH4_3g29252 FvH4_3g38950 FvH4_3g44310 FvH4_5g29400
malus_domestica MD03G1066300.v1.1
rosa_chinensis RchiOBHm_Chr2g0087341 RchiOBHm_Chr7g0225691 RchiOBHm_Chr7g0225721 RchiOBHm_Chr7g0225751 RchiOBHm_Chr7g0225781 RchiOBHm_Chr7g0225811 RchiOBHm_Chr7g0225821 RchiOBHm_Chr7g0225841 RchiOBHm_Chr7g0225941
rosa_laevigata RLG00000001777 RLG00000001779 RLG00000001787 RLG00000001796 RLG00000015858 RLG00000018399 RLG00000030202
rosa_multiflora Rmu_co7995100.1_g000001 Rmu_sc0003367.1_g000025 Rmu_sc0004082.1_g000018 Rmu_sc0006064.1_g000002 Rmu_sc0011806.1_g000001 Rmu_sc0014642.1_g000005 Rmu_sc0014767.1_g000003 Rmu_sc0015723.1_g000001 Rmu_sc0030795.1_g000001 Rmu_sc0033647.1_g000001
rosa_roxburghii Rroxscaffold_1G00028220 Rroxscaffold_2G00089180 Rroxscaffold_2G00125860 Rroxscaffold_3G00233350 Rroxscaffold_3G00239570 Rroxscaffold_4G00325690 Rroxscaffold_5G00348560 Rroxscaffold_7G00198070
rosa_rugosa Rorug01G0045600 Rorug01G0474300.1 Rorug07G0220000 Rorug07G0220100 Rorug07G0220200 Rorug07G0220300 Rorug07G0232800 Rorug07G0233000 Rorug07G0233100 Rorug07G0233100 Rorug07G0233200 Rorug07G0233300.1
rosa_samantha Rh1AG061100 Rh1BG052200 Rh1CG063300 Rh1CG063600 Rh1DG067700 Rh2AG027900 Rh2BG027400 Rh2CG028200 Rh2DG028000 Rh7AG369700 Rh7AG370100 Rh7AG371200 Rh7AG387800 Rh7BG366500 Rh7BG366800 Rh7BG367000 Rh7BG367600 Rh7CG388600 Rh7CG389000 Rh7CG389800 Rh7CG407400 Rh7DG377400 Rh7DG377500 Rh7DG377900 Rh7DG378600 Rh7DG378700 Rh7DG378800
rosa_wichuraiana Rw0G020970 Rw0G020980 Rw1G005200 Rw2G002210 Rw7G031830 Rw7G031860 Rw7G031900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 497
AccBSI CCGCTC 1 cut(s) 323
AccI GTMKAC 1 cut(s) 44
AccII CGCG 1 cut(s) 61
AciI CCGC 4 cut(s) 7, 13, 321, 501
AclWI GGATC 4 cut(s) 163, 192, 221, 521
AcsI RAATTY 2 cut(s) 427, 620
AcuI CTGAAG 2 cut(s) 90, 552
AcyI GRCGYC 1 cut(s) 107
AfeI AGCGCT 1 cut(s) 733
AfiI CCNNNNNNNGG 3 cut(s) 91, 226, 510
AgsI TTSAA 6 cut(s) 274, 293, 427, 687, 699, 790
AhlI ACTAGT 1 cut(s) 677
AloI GAACNNNNNNTCC 2 cut(s) 667, 699
AluBI AGCT 3 cut(s) 313, 601, 727
AluI AGCT 3 cut(s) 313, 601, 727
Alw21I GWGCWC 1 cut(s) 729
Alw26I GTCTC 3 cut(s) 372, 562, 808
AlwI GGATC 4 cut(s) 163, 192, 221, 521
Aor51HI AGCGCT 1 cut(s) 733
AoxI GGCC 2 cut(s) 15, 554
ApoI RAATTY 2 cut(s) 427, 620
ArsI GACNNNNNNTTYG 2 cut(s) 383, 415
AspLEI GCGC 3 cut(s) 63, 662, 734
AspS9I GGNCC 1 cut(s) 15
AsuHPI GGTGA 1 cut(s) 520
BaeGI GKGCMC 1 cut(s) 540
BanI GGYRCC 1 cut(s) 497
BanII GRGCYC 1 cut(s) 729
BauI CACGAG 2 cut(s) 338, 542
BbsI GAAGAC 1 cut(s) 391
Bbv12I GWGCWC 1 cut(s) 729
BbvCI CCTCAGC 1 cut(s) 387
BccI CCATC 3 cut(s) 341, 470, 484
BceAI ACGGC 1 cut(s) 120
BcoDI GTCTC 3 cut(s) 372, 562, 808
BcuI ACTAGT 1 cut(s) 677
BfaI CTAG 2 cut(s) 552, 678
BfoI RGCGCY 1 cut(s) 735
BisI GCNGC 1 cut(s) 501
BlpI GCTNAGC 1 cut(s) 728
BlsI GCNGC 1 cut(s) 502
BmgT120I GGNCC 1 cut(s) 15
BmiI GGNNCC 1 cut(s) 499
BpiI GAAGAC 1 cut(s) 391
Bpu10I CCTNAGC 1 cut(s) 387
Bpu1102I GCTNAGC 1 cut(s) 728
BsaHI GRCGYC 1 cut(s) 107
BsaJI CCNNGG 1 cut(s) 504
BsaWI WCCGGW 2 cut(s) 84, 219
Bsc4I CCNNNNNNNGG 3 cut(s) 91, 226, 510
Bse3DI GCAATG 1 cut(s) 381
BseDI CCNNGG 1 cut(s) 504
BseGI GGATG 3 cut(s) 333, 472, 582
BseLI CCNNNNNNNGG 3 cut(s) 91, 226, 510
BseMI GCAATG 1 cut(s) 381
BseMII CTCAG 4 cut(s) 378, 572, 705, 742
BseRI GAGGAG 2 cut(s) 475, 500
BseSI GKGCMC 1 cut(s) 540
BsgI GTGCAG 2 cut(s) 289, 601
Bsh1236I CGCG 1 cut(s) 61
BshFI GGCC 2 cut(s) 17, 556
BshNI GGYRCC 1 cut(s) 497
BsiHKAI GWGCWC 1 cut(s) 729
BsiSI CCGG 2 cut(s) 85, 220
BslFI GGGAC 1 cut(s) 244
BslI CCNNNNNNNGG 3 cut(s) 91, 226, 510
BsmAI GTCTC 3 cut(s) 372, 562, 808
BsmFI GGGAC 1 cut(s) 244
BsnI GGCC 2 cut(s) 17, 556
Bsp1286I GDGCHC 2 cut(s) 540, 729
Bsp143I GATC 5 cut(s) 143, 155, 197, 213, 513
Bsp1720I GCTNAGC 1 cut(s) 728
BspACI CCGC 4 cut(s) 7, 13, 321, 501
BspANI GGCC 2 cut(s) 17, 556
BspCNI CTCAG 4 cut(s) 379, 571, 706, 741
BspFNI CGCG 1 cut(s) 61
BspHI TCATGA 2 cut(s) 481, 739
BspLI GGNNCC 1 cut(s) 499
BspPI GGATC 4 cut(s) 163, 192, 221, 521
BspT107I GGYRCC 1 cut(s) 497
BsrBI CCGCTC 1 cut(s) 323
BsrDI GCAATG 1 cut(s) 381
BssECI CCNNGG 1 cut(s) 504
BssMI GATC 5 cut(s) 143, 155, 197, 213, 513
BssNI GRCGYC 1 cut(s) 107
BssSI CACGAG 2 cut(s) 338, 542
Bst2BI CACGAG 2 cut(s) 338, 542
Bst4CI ACNGT 5 cut(s) 49, 448, 508, 766, 810
Bst6I CTCTTC 1 cut(s) 145
BstACI GRCGYC 1 cut(s) 107
BstC8I GCNNGC 1 cut(s) 15
BstDEI CTNAG 4 cut(s) 387, 558, 714, 728
BstDSI CCRYGG 1 cut(s) 504
BstF5I GGATG 3 cut(s) 333, 472, 582
BstFNI CGCG 1 cut(s) 61
BstH2I RGCGCY 1 cut(s) 735
BstHHI GCGC 3 cut(s) 63, 662, 734
BstKTI GATC 5 cut(s) 146, 158, 200, 216, 516
BstMAI GTCTC 3 cut(s) 372, 562, 808
BstMBI GATC 5 cut(s) 143, 155, 197, 213, 513
BstMWI GCNNNNNNNGC 2 cut(s) 329, 652
BstNSI RCATGY 1 cut(s) 286
BstSLI GKGCMC 1 cut(s) 540
BstUI CGCG 1 cut(s) 61
BstV2I GAAGAC 1 cut(s) 391
BstX2I RGATCY 1 cut(s) 197
BstYI RGATCY 1 cut(s) 197
BsuRI GGCC 2 cut(s) 17, 556
BtgI CCRYGG 1 cut(s) 504
BtsCI GGATG 3 cut(s) 333, 472, 582
BtsIMutI CAGTG 3 cut(s) 444, 762, 806
Cac8I GCNNGC 1 cut(s) 15
CciI TCATGA 2 cut(s) 481, 739
CfoI GCGC 3 cut(s) 63, 662, 734
Cfr13I GGNCC 1 cut(s) 15
CseI GACGC 1 cut(s) 96
CviAII CATG 6 cut(s) 261, 283, 482, 616, 672, 740
DdeI CTNAG 4 cut(s) 387, 558, 714, 728
DpnI GATC 5 cut(s) 145, 157, 199, 215, 515
DpnII GATC 5 cut(s) 143, 155, 197, 213, 513
Eam1104I CTCTTC 1 cut(s) 145
EarI CTCTTC 1 cut(s) 145
Ecl136II GAGCTC 1 cut(s) 727
Eco147I AGGCCT 1 cut(s) 556
Eco24I GRGCYC 1 cut(s) 729
Eco32I GATATC 1 cut(s) 720
Eco47III AGCGCT 1 cut(s) 733
Eco53kI GAGCTC 1 cut(s) 727
Eco57I CTGAAG 2 cut(s) 90, 552
EcoICRI GAGCTC 1 cut(s) 727
EcoRI GAATTC 1 cut(s) 620
EcoRV GATATC 1 cut(s) 720
EcoT38I GRGCYC 1 cut(s) 729
FaeI CATG 6 cut(s) 264, 286, 485, 619, 675, 743
FaiI YATR 9 cut(s) 26, 262, 284, 483, 617, 673, 741, 770, 777
FalI AAGNNNNNCTT 1 cut(s) 34
FaqI GGGAC 1 cut(s) 244
FatI CATG 6 cut(s) 260, 282, 481, 615, 671, 739
FauI CCCGC 1 cut(s) 6
FblI GTMKAC 1 cut(s) 44
Fnu4HI GCNGC 1 cut(s) 501
FokI GGATG 3 cut(s) 320, 479, 589
FriOI GRGCYC 1 cut(s) 729
Fsp4HI GCNGC 1 cut(s) 501
FspBI CTAG 2 cut(s) 552, 678
GlaI GCGC 3 cut(s) 62, 661, 733
GluI GCNGC 1 cut(s) 501
HaeII RGCGCY 1 cut(s) 735
HaeIII GGCC 2 cut(s) 17, 556
HapII CCGG 2 cut(s) 85, 220
HgaI GACGC 1 cut(s) 96
HhaI GCGC 3 cut(s) 63, 662, 734
Hin1I GRCGYC 1 cut(s) 107
Hin1II CATG 6 cut(s) 264, 286, 485, 619, 675, 743
Hin6I GCGC 3 cut(s) 61, 660, 732
HinP1I GCGC 3 cut(s) 61, 660, 732
HinfI GANTC 5 cut(s) 77, 293, 410, 416, 595
HpaII CCGG 2 cut(s) 85, 220
HphI GGTGA 1 cut(s) 520
Hpy166II GTNNAC 1 cut(s) 45
Hpy188I TCNGA 3 cut(s) 415, 421, 724
Hpy188III TCNNGA 5 cut(s) 141, 147, 482, 740, 787
Hpy8I GTNNAC 1 cut(s) 45
Hpy99I CGWCG 2 cut(s) 43, 112
HpyAV CCTTC 2 cut(s) 363, 657
HpyCH4III ACNGT 5 cut(s) 49, 448, 508, 766, 810
HpyCH4V TGCA 3 cut(s) 306, 582, 655
HpyF10VI GCNNNNNNNGC 2 cut(s) 329, 652
HpyF3I CTNAG 4 cut(s) 387, 558, 714, 728
Hsp92I GRCGYC 1 cut(s) 107
Hsp92II CATG 6 cut(s) 264, 286, 485, 619, 675, 743
HspAI GCGC 3 cut(s) 61, 660, 732
Kzo9I GATC 5 cut(s) 143, 155, 197, 213, 513
LmnI GCTCC 1 cut(s) 318
LpnPI CCDG 7 cut(s) 81, 98, 154, 195, 233, 269, 568
MaeI CTAG 2 cut(s) 552, 678
MalI GATC 5 cut(s) 145, 157, 199, 215, 515
MbiI CCGCTC 1 cut(s) 323
MboI GATC 5 cut(s) 143, 155, 197, 213, 513
MboII GAAGA 4 cut(s) 83, 86, 162, 391
MfeI CAATTG 1 cut(s) 687
MflI RGATCY 1 cut(s) 197
MhlI GDGCHC 2 cut(s) 540, 729
MluCI AATT 4 cut(s) 288, 427, 620, 687
MseI TTAA 2 cut(s) 185, 756
MslI CAYNNNNRTG 2 cut(s) 242, 767
MspI CCGG 2 cut(s) 85, 220
MunI CAATTG 1 cut(s) 687
MvnI CGCG 1 cut(s) 61
MwoI GCNNNNNNNGC 2 cut(s) 329, 652
NdeII GATC 5 cut(s) 143, 155, 197, 213, 513
NlaIII CATG 6 cut(s) 264, 286, 485, 619, 675, 743
NlaIV GGNNCC 1 cut(s) 499
NspI RCATGY 1 cut(s) 286
PagI TCATGA 2 cut(s) 481, 739
PceI AGGCCT 1 cut(s) 556
PcsI WCGNNNNNNNCGW 2 cut(s) 38, 345
PfeI GAWTC 5 cut(s) 77, 293, 410, 416, 595
PflFI GACNNNGTC 1 cut(s) 395
PkrI GCNGC 1 cut(s) 502
Psp124BI GAGCTC 1 cut(s) 729
PspN4I GGNNCC 1 cut(s) 499
PspPI GGNCC 1 cut(s) 15
PsuI RGATCY 1 cut(s) 197
PsyI GACNNNGTC 1 cut(s) 395
RseI CAYNNNNRTG 2 cut(s) 242, 767
SacI GAGCTC 1 cut(s) 729
SaqAI TTAA 2 cut(s) 185, 756
SatI GCNGC 1 cut(s) 501
Sau3AI GATC 5 cut(s) 143, 155, 197, 213, 513
Sau96I GGNCC 1 cut(s) 15
SduI GDGCHC 2 cut(s) 540, 729
SetI ASST 5 cut(s) 258, 315, 603, 638, 729
SmiMI CAYNNNNRTG 2 cut(s) 242, 767
SpeI ACTAGT 1 cut(s) 677
Sse9I AATT 4 cut(s) 288, 427, 620, 687
SseBI AGGCCT 1 cut(s) 556
SsiI CCGC 4 cut(s) 7, 13, 321, 501
SspMI CTAG 2 cut(s) 552, 678
SstI GAGCTC 1 cut(s) 729
StuI AGGCCT 1 cut(s) 556
TaaI ACNGT 5 cut(s) 49, 448, 508, 766, 810
TaqI TCGA 4 cut(s) 158, 348, 402, 603
TasI AATT 4 cut(s) 288, 427, 620, 687
TauI GCSGC 1 cut(s) 503
TfiI GAWTC 5 cut(s) 77, 293, 410, 416, 595
Tru1I TTAA 2 cut(s) 185, 756
Tru9I TTAA 2 cut(s) 185, 756
TscAI CASTG 3 cut(s) 451, 769, 813
TspDTI ATGAA 3 cut(s) 17, 207, 608
TspRI CASTG 3 cut(s) 451, 769, 813
Tth111I GACNNNGTC 1 cut(s) 395
XapI RAATTY 2 cut(s) 427, 620
XceI RCATGY 1 cut(s) 286
XmiI GTMKAC 1 cut(s) 44
XspI CTAG 2 cut(s) 552, 678
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.