Rw0G020980

repressing transcription factor binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00961
OG0000518
Physical Location & Seq
Forward (+)
158003 .. 158815
813 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G020980.1

Sequence Viewer

Length: 813 bp
ATGAAGCGGAAGCGGGCCTTTACTATGGCTTCGTCATCGTCGTCTACCGTGAAACCCTCGCGCTTCCCTGAAGAAGAATCAGTCCGGTGTTGGGAGAGCAAAACGGCGTCGTCAAACAGAGCCCGACCCCAAATCCAATCCAGATCAAGAAGAGGATCGAAAACAAGAAACATCAATGATGTCTTAAAAGATGAAAGATCCAAGATTTCTGGGATCAACCGGATTTTGGGGACACCCATTCCCGTGAGCAATAACCTGACATGGAGGCTTTTGAAATCTCACATGCGAATTGAATCTTTTTACTGCACCAAGCTCCACTCCGCTCTCAATGCCATCCACGAGTGTTTCGAGCCTTCCAAAGACCCCTACACCAACAGAGACATTGCTGAGGACATTGTCTTCGACTTGGAATCCGATTCCGAGTTGAATTTGAGAGGGTTTTACACTGTGGTTTTGGAGAGGAGGGATGATGATGATGGCCATGAGGAGATGGTCGGTGCCGCCACGGTGAGGATCAATAAGGGAGTGGCTGAAGTGCCCCTCGTGGCGACTAGGCCTCAGTTTAGGAGACTTGGGATGTGCAGGATTTTGATGAATGAGCTCCAAAATCGGCTCATGGAATTCGGCATTGAGAGGTTAGTCTTGCCTTCTGTGCAAAGCGCACTCAATACATGGACTAGTAGTTCAATTGGGTTTTCAATGATGAGTGAGGCTGAGATATCAGAGCTCAGTGCTCATCATGACTTCTTGGATTTTAAGGACACTGTTATGTGCCATAAAATACTCTTGAAGCACCCAATAGTCTCACTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000118 GO:0000228 GO:0000785 GO:0000790 GO:0001085 GO:0001103 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0004407 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005813 GO:0005815 GO:0005856 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0008026 GO:0008094 GO:0008134 GO:0008150 GO:0008152 GO:0008270 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0015630 GO:0016043 GO:0016462 GO:0016569 GO:0016570 GO:0016575 GO:0016581 GO:0016787 GO:0016810 GO:0016811 GO:0016817 GO:0016818 GO:0016887 GO:0017053 GO:0017111 GO:0019213 GO:0019219 GO:0019222 GO:0019538 GO:0019899 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032392 GO:0032508 GO:0032991 GO:0033558 GO:0035601 GO:0036211 GO:0042623 GO:0042826 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0046872 GO:0046914 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070035 GO:0070491 GO:0070603 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0090545 GO:0090568 GO:0097159 GO:0098732 GO:0140096 GO:0140097 GO:1901363 GO:1901564 GO:1902494 GO:1903506 GO:1904949 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_1 Acetyltransf_10 Agenet Jas PHD

Protein Analysis

270

Amino Acids

30.82

Weight (kDa)

8.81

Isoelectric Point (pI)

62.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IDM1_C PF23209 116 - 260 3.7e-36 Increased DNA methylation 1, C-terminal domain
Acetyltransf_1 PF00583 141 - 221 3.5e-06 Acetyltransferase (GNAT) family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000518)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21681 FvH4_3g29252 FvH4_3g38950 FvH4_3g44310 FvH4_5g29400
malus_domestica MD03G1066300.v1.1
rosa_chinensis RchiOBHm_Chr2g0087341 RchiOBHm_Chr7g0225691 RchiOBHm_Chr7g0225721 RchiOBHm_Chr7g0225751 RchiOBHm_Chr7g0225781 RchiOBHm_Chr7g0225811 RchiOBHm_Chr7g0225821 RchiOBHm_Chr7g0225841 RchiOBHm_Chr7g0225941
rosa_laevigata RLG00000001777 RLG00000001779 RLG00000001787 RLG00000001796 RLG00000015858 RLG00000018399 RLG00000030202
rosa_multiflora Rmu_co7995100.1_g000001 Rmu_sc0003367.1_g000025 Rmu_sc0004082.1_g000018 Rmu_sc0006064.1_g000002 Rmu_sc0011806.1_g000001 Rmu_sc0014642.1_g000005 Rmu_sc0014767.1_g000003 Rmu_sc0015723.1_g000001 Rmu_sc0030795.1_g000001 Rmu_sc0033647.1_g000001
rosa_roxburghii Rroxscaffold_1G00028220 Rroxscaffold_2G00089180 Rroxscaffold_2G00125860 Rroxscaffold_3G00233350 Rroxscaffold_3G00239570 Rroxscaffold_4G00325690 Rroxscaffold_5G00348560 Rroxscaffold_7G00198070
rosa_rugosa Rorug01G0045600 Rorug01G0474300.1 Rorug07G0220000 Rorug07G0220100 Rorug07G0220200 Rorug07G0220300 Rorug07G0232800 Rorug07G0233000 Rorug07G0233100 Rorug07G0233100 Rorug07G0233200 Rorug07G0233300.1
rosa_samantha Rh1AG061100 Rh1BG052200 Rh1CG063300 Rh1CG063600 Rh1DG067700 Rh2AG027900 Rh2BG027400 Rh2CG028200 Rh2DG028000 Rh7AG369700 Rh7AG370100 Rh7AG371200 Rh7AG387800 Rh7BG366500 Rh7BG366800 Rh7BG367000 Rh7BG367600 Rh7CG388600 Rh7CG389000 Rh7CG389800 Rh7CG407400 Rh7DG377400 Rh7DG377500 Rh7DG377900 Rh7DG378600 Rh7DG378700 Rh7DG378800
rosa_wichuraiana Rw0G020970 Rw0G020980 Rw1G005200 Rw2G002210 Rw7G031830 Rw7G031860 Rw7G031900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 497
AccBSI CCGCTC 1 cut(s) 323
AccI GTMKAC 1 cut(s) 44
AccII CGCG 1 cut(s) 61
AciI CCGC 4 cut(s) 7, 13, 321, 501
AclWI GGATC 4 cut(s) 163, 192, 221, 521
AcoI YGGCCR 1 cut(s) 478
AcsI RAATTY 2 cut(s) 427, 620
AcuI CTGAAG 2 cut(s) 90, 552
AcyI GRCGYC 1 cut(s) 107
AfiI CCNNNNNNNGG 3 cut(s) 91, 226, 510
AgsI TTSAA 6 cut(s) 274, 293, 427, 687, 699, 790
AhlI ACTAGT 1 cut(s) 677
AloI GAACNNNNNNTCC 2 cut(s) 667, 699
AluBI AGCT 3 cut(s) 313, 601, 727
AluI AGCT 3 cut(s) 313, 601, 727
Alw21I GWGCWC 3 cut(s) 603, 729, 736
Alw26I GTCTC 3 cut(s) 372, 562, 808
AlwI GGATC 4 cut(s) 163, 192, 221, 521
AoxI GGCC 3 cut(s) 15, 478, 554
ApoI RAATTY 2 cut(s) 427, 620
ArsI GACNNNNNNTTYG 2 cut(s) 383, 415
AspLEI GCGC 2 cut(s) 63, 662
AspS9I GGNCC 1 cut(s) 15
AsuHPI GGTGA 1 cut(s) 520
BaeGI GKGCMC 1 cut(s) 540
BalI TGGCCA 1 cut(s) 480
BanI GGYRCC 1 cut(s) 497
BanII GRGCYC 3 cut(s) 124, 603, 729
BauI CACGAG 2 cut(s) 338, 542
BbsI GAAGAC 1 cut(s) 391
Bbv12I GWGCWC 3 cut(s) 603, 729, 736
BbvCI CCTCAGC 1 cut(s) 387
BccI CCATC 3 cut(s) 341, 470, 484
BceAI ACGGC 1 cut(s) 120
BcoDI GTCTC 3 cut(s) 372, 562, 808
BcuI ACTAGT 1 cut(s) 677
BfaI CTAG 2 cut(s) 552, 678
BisI GCNGC 1 cut(s) 501
BlsI GCNGC 1 cut(s) 502
BmgT120I GGNCC 1 cut(s) 15
BmiI GGNNCC 1 cut(s) 499
BpiI GAAGAC 1 cut(s) 391
Bpu10I CCTNAGC 1 cut(s) 387
BsaHI GRCGYC 1 cut(s) 107
BsaJI CCNNGG 1 cut(s) 504
BsaWI WCCGGW 2 cut(s) 84, 219
Bsc4I CCNNNNNNNGG 3 cut(s) 91, 226, 510
Bse3DI GCAATG 1 cut(s) 381
BseDI CCNNGG 1 cut(s) 504
BseGI GGATG 3 cut(s) 333, 472, 582
BseLI CCNNNNNNNGG 3 cut(s) 91, 226, 510
BseMI GCAATG 1 cut(s) 381
BseMII CTCAG 4 cut(s) 378, 572, 705, 742
BseRI GAGGAG 2 cut(s) 475, 500
BseSI GKGCMC 1 cut(s) 540
BsgI GTGCAG 2 cut(s) 289, 601
Bsh1236I CGCG 1 cut(s) 61
BshFI GGCC 3 cut(s) 17, 480, 556
BshNI GGYRCC 1 cut(s) 497
BsiHKAI GWGCWC 3 cut(s) 603, 729, 736
BsiSI CCGG 2 cut(s) 85, 220
BslFI GGGAC 1 cut(s) 244
BslI CCNNNNNNNGG 3 cut(s) 91, 226, 510
BsmAI GTCTC 3 cut(s) 372, 562, 808
BsmFI GGGAC 1 cut(s) 244
BsnI GGCC 3 cut(s) 17, 480, 556
Bsp1286I GDGCHC 5 cut(s) 124, 540, 603, 729, 736
Bsp143I GATC 5 cut(s) 143, 155, 197, 213, 513
BspACI CCGC 4 cut(s) 7, 13, 321, 501
BspANI GGCC 3 cut(s) 17, 480, 556
BspCNI CTCAG 4 cut(s) 379, 571, 706, 741
BspFNI CGCG 1 cut(s) 61
BspHI TCATGA 1 cut(s) 739
BspLI GGNNCC 1 cut(s) 499
BspPI GGATC 4 cut(s) 163, 192, 221, 521
BspT107I GGYRCC 1 cut(s) 497
BsrBI CCGCTC 1 cut(s) 323
BsrDI GCAATG 1 cut(s) 381
BssECI CCNNGG 1 cut(s) 504
BssMI GATC 5 cut(s) 143, 155, 197, 213, 513
BssNI GRCGYC 1 cut(s) 107
BssSI CACGAG 2 cut(s) 338, 542
Bst2BI CACGAG 2 cut(s) 338, 542
Bst4CI ACNGT 5 cut(s) 49, 448, 508, 766, 810
Bst6I CTCTTC 1 cut(s) 145
BstACI GRCGYC 1 cut(s) 107
BstC8I GCNNGC 1 cut(s) 15
BstDEI CTNAG 4 cut(s) 387, 558, 714, 728
BstDSI CCRYGG 1 cut(s) 504
BstF5I GGATG 3 cut(s) 333, 472, 582
BstFNI CGCG 1 cut(s) 61
BstHHI GCGC 2 cut(s) 63, 662
BstKTI GATC 5 cut(s) 146, 158, 200, 216, 516
BstMAI GTCTC 3 cut(s) 372, 562, 808
BstMBI GATC 5 cut(s) 143, 155, 197, 213, 513
BstMWI GCNNNNNNNGC 2 cut(s) 329, 652
BstNSI RCATGY 1 cut(s) 286
BstSLI GKGCMC 1 cut(s) 540
BstUI CGCG 1 cut(s) 61
BstV2I GAAGAC 1 cut(s) 391
BstX2I RGATCY 1 cut(s) 197
BstYI RGATCY 1 cut(s) 197
BsuRI GGCC 3 cut(s) 17, 480, 556
BtgI CCRYGG 1 cut(s) 504
BtsCI GGATG 3 cut(s) 333, 472, 582
BtsIMutI CAGTG 4 cut(s) 444, 736, 762, 806
Cac8I GCNNGC 1 cut(s) 15
CciI TCATGA 1 cut(s) 739
CfoI GCGC 2 cut(s) 63, 662
Cfr13I GGNCC 1 cut(s) 15
CseI GACGC 1 cut(s) 96
CviAII CATG 6 cut(s) 261, 283, 482, 616, 672, 740
DdeI CTNAG 4 cut(s) 387, 558, 714, 728
DpnI GATC 5 cut(s) 145, 157, 199, 215, 515
DpnII GATC 5 cut(s) 143, 155, 197, 213, 513
EaeI YGGCCR 1 cut(s) 478
Eam1104I CTCTTC 1 cut(s) 145
EarI CTCTTC 1 cut(s) 145
Ecl136II GAGCTC 2 cut(s) 601, 727
Eco147I AGGCCT 1 cut(s) 556
Eco24I GRGCYC 3 cut(s) 124, 603, 729
Eco32I GATATC 1 cut(s) 720
Eco53kI GAGCTC 2 cut(s) 601, 727
Eco57I CTGAAG 2 cut(s) 90, 552
EcoICRI GAGCTC 2 cut(s) 601, 727
EcoRI GAATTC 1 cut(s) 620
EcoRV GATATC 1 cut(s) 720
EcoT38I GRGCYC 3 cut(s) 124, 603, 729
FaeI CATG 6 cut(s) 264, 286, 485, 619, 675, 743
FaiI YATR 9 cut(s) 26, 262, 284, 483, 617, 673, 741, 770, 777
FalI AAGNNNNNCTT 1 cut(s) 34
FaqI GGGAC 1 cut(s) 244
FatI CATG 6 cut(s) 260, 282, 481, 615, 671, 739
FauI CCCGC 1 cut(s) 6
FblI GTMKAC 1 cut(s) 44
Fnu4HI GCNGC 1 cut(s) 501
FokI GGATG 3 cut(s) 320, 479, 589
FriOI GRGCYC 3 cut(s) 124, 603, 729
Fsp4HI GCNGC 1 cut(s) 501
FspBI CTAG 2 cut(s) 552, 678
GlaI GCGC 2 cut(s) 62, 661
GluI GCNGC 1 cut(s) 501
HaeIII GGCC 3 cut(s) 17, 480, 556
HapII CCGG 2 cut(s) 85, 220
HgaI GACGC 1 cut(s) 96
HhaI GCGC 2 cut(s) 63, 662
Hin1I GRCGYC 1 cut(s) 107
Hin1II CATG 6 cut(s) 264, 286, 485, 619, 675, 743
Hin6I GCGC 2 cut(s) 61, 660
HinP1I GCGC 2 cut(s) 61, 660
HinfI GANTC 4 cut(s) 77, 293, 410, 416
HpaII CCGG 2 cut(s) 85, 220
HphI GGTGA 1 cut(s) 520
Hpy166II GTNNAC 1 cut(s) 45
Hpy188I TCNGA 3 cut(s) 415, 421, 724
Hpy188III TCNNGA 4 cut(s) 141, 147, 740, 787
Hpy8I GTNNAC 1 cut(s) 45
Hpy99I CGWCG 2 cut(s) 43, 112
HpyAV CCTTC 2 cut(s) 363, 657
HpyCH4III ACNGT 5 cut(s) 49, 448, 508, 766, 810
HpyCH4V TGCA 3 cut(s) 306, 582, 655
HpyF10VI GCNNNNNNNGC 2 cut(s) 329, 652
HpyF3I CTNAG 4 cut(s) 387, 558, 714, 728
Hsp92I GRCGYC 1 cut(s) 107
Hsp92II CATG 6 cut(s) 264, 286, 485, 619, 675, 743
HspAI GCGC 2 cut(s) 61, 660
Kzo9I GATC 5 cut(s) 143, 155, 197, 213, 513
LmnI GCTCC 2 cut(s) 318, 606
LpnPI CCDG 7 cut(s) 81, 98, 154, 195, 233, 269, 568
MaeI CTAG 2 cut(s) 552, 678
MalI GATC 5 cut(s) 145, 157, 199, 215, 515
MbiI CCGCTC 1 cut(s) 323
MboI GATC 5 cut(s) 143, 155, 197, 213, 513
MboII GAAGA 4 cut(s) 83, 86, 162, 391
MfeI CAATTG 1 cut(s) 687
MflI RGATCY 1 cut(s) 197
MhlI GDGCHC 5 cut(s) 124, 540, 603, 729, 736
MlsI TGGCCA 1 cut(s) 480
MluCI AATT 4 cut(s) 288, 427, 620, 687
MluNI TGGCCA 1 cut(s) 480
Mox20I TGGCCA 1 cut(s) 480
MscI TGGCCA 1 cut(s) 480
MseI TTAA 2 cut(s) 185, 756
MslI CAYNNNNRTG 2 cut(s) 242, 767
Msp20I TGGCCA 1 cut(s) 480
MspI CCGG 2 cut(s) 85, 220
MunI CAATTG 1 cut(s) 687
MvnI CGCG 1 cut(s) 61
MwoI GCNNNNNNNGC 2 cut(s) 329, 652
NdeII GATC 5 cut(s) 143, 155, 197, 213, 513
NlaIII CATG 6 cut(s) 264, 286, 485, 619, 675, 743
NlaIV GGNNCC 1 cut(s) 499
NspI RCATGY 1 cut(s) 286
PagI TCATGA 1 cut(s) 739
PceI AGGCCT 1 cut(s) 556
PcsI WCGNNNNNNNCGW 2 cut(s) 38, 345
PfeI GAWTC 4 cut(s) 77, 293, 410, 416
PflFI GACNNNGTC 1 cut(s) 395
PkrI GCNGC 1 cut(s) 502
Psp124BI GAGCTC 2 cut(s) 603, 729
PspN4I GGNNCC 1 cut(s) 499
PspPI GGNCC 1 cut(s) 15
PsuI RGATCY 1 cut(s) 197
PsyI GACNNNGTC 1 cut(s) 395
RseI CAYNNNNRTG 2 cut(s) 242, 767
SacI GAGCTC 2 cut(s) 603, 729
SaqAI TTAA 2 cut(s) 185, 756
SatI GCNGC 1 cut(s) 501
Sau3AI GATC 5 cut(s) 143, 155, 197, 213, 513
Sau96I GGNCC 1 cut(s) 15
SduI GDGCHC 5 cut(s) 124, 540, 603, 729, 736
SetI ASST 5 cut(s) 258, 315, 603, 638, 729
SmiMI CAYNNNNRTG 2 cut(s) 242, 767
SpeI ACTAGT 1 cut(s) 677
Sse9I AATT 4 cut(s) 288, 427, 620, 687
SseBI AGGCCT 1 cut(s) 556
SsiI CCGC 4 cut(s) 7, 13, 321, 501
SspMI CTAG 2 cut(s) 552, 678
SstI GAGCTC 2 cut(s) 603, 729
StuI AGGCCT 1 cut(s) 556
TaaI ACNGT 5 cut(s) 49, 448, 508, 766, 810
TaqI TCGA 3 cut(s) 158, 348, 402
TasI AATT 4 cut(s) 288, 427, 620, 687
TauI GCSGC 1 cut(s) 503
TfiI GAWTC 4 cut(s) 77, 293, 410, 416
Tru1I TTAA 2 cut(s) 185, 756
Tru9I TTAA 2 cut(s) 185, 756
TscAI CASTG 4 cut(s) 451, 736, 769, 813
TspDTI ATGAA 3 cut(s) 17, 207, 608
TspRI CASTG 4 cut(s) 451, 736, 769, 813
Tth111I GACNNNGTC 1 cut(s) 395
XapI RAATTY 2 cut(s) 427, 620
XceI RCATGY 1 cut(s) 286
XmiI GTMKAC 1 cut(s) 44
XspI CTAG 2 cut(s) 552, 678
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.