FvH4_4g05350
ERF Family

Belongs to the GST superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000081
Physical Location & Seq
Forward (+)
4629110 .. 4629784
675 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g05350.t1

Sequence Viewer

Length: 561 bp
ATGGATGAAGTGAAGCTACTGGGATTCTGGCCTAGCCCTTTTGTCTACAGAGTGATATGGGCTCTCAAACTGAAGGGCGTAAAATTCGATTACATAAAACAAGACCTTTCCAACAAGAGTGAACTGCTCTCGTTGTACATCCCAGTTTTGAAAAAAGTCCCGGTGCTTATCCATGGCGGCAAAGCAGTTGCTGAATCCTTTGTCATCCTTGAATACATTGAAGAAACTTGGCCACAAAATCCCTTGCTTCCAAAAGATCCTCATGGAAAAGCCTTGGCTCGAGTTCCAAGAAGTCTTGAAGATCGTGGAAGACAAGGCCTTGCAGACCAGAAATTTTTTGGTGGTGACAATACTATAGGTTTGGTGGACATTGCATTTGGAATGCTAGACTGGTTTGAGTGCATCGAAGAAGTTGTAGGAGTGAAGGTTATAGAGGCCAGAAGTTTGCCTCGCTTGCATGCATGGGCTCAAAATTTCAAGCAAGTGCCTGTGGTCAAGGATAACCTTCCCGACCGCGGAAAACTGCTTGCCTATTACAAACATTCAAGAGAGAGAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418
Pfam Domains
Protein Families
GST_C GST_N

Protein Analysis

187

Amino Acids

21.28

Weight (kDa)

8.87

Isoelectric Point (pI)

37.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GST_N PF02798 4 - 75 1.5e-15 Glutathione S-transferase, N-terminal domain
GST_N_3 PF13417 8 - 80 8.1e-12 Glutathione S-transferase, N-terminal domain
GST_N_2 PF13409 12 - 76 4.3e-12 Glutathione S-transferase, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000081)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G29420
fragaria_vesca FvH4_2g20010 FvH4_2g20020 FvH4_2g20030 FvH4_2g20060 FvH4_2g20070 FvH4_2g20080 FvH4_2g20091 FvH4_2g20110 FvH4_4g05320 FvH4_4g05350 FvH4_4g05360 FvH4_4g12720 FvH4_5g16920 FvH4_5g16920 FvH4_5g16920 FvH4_5g16920 FvH4_5g36020 FvH4_5g36870 FvH4_7g07360 FvH4_7g07390 FvH4_7g09460 FvH4_7g09460 FvH4_7g09460 FvH4_7g09460 FvH4_7g09460
malus_domestica MD00G1136300.v1.1 MD02G1236000.v1.1 MD02G1236100.v1.1 MD05G1184200.v1.1 MD05G1184300.v1.1 MD05G1184400.v1.1 MD05G1184600.v1.1 MD10G1172100.v1.1 MD10G1172200.v1.1 MD10G1172300.v1.1 MD13G1227600.v1.1 MD14G1232100.v1.1 MD14G1232200.v1.1 MD16G1011600.v1.1 MD16G1232800.v1.1 MD16G1232900.v1.1
prunus_persica Prupe.1G039900_v2.0.a1 Prupe.1G054800_v2.0.a1 Prupe.1G054900_v2.0.a1 Prupe.1G055000_v2.0.a1 Prupe.1G055300_v2.0.a1 Prupe.1G055900_v2.0.a1 Prupe.1G056000_v2.0.a1 Prupe.1G056100_v2.0.a1 Prupe.1G526000_v2.0.a1 Prupe.2G101400_v2.0.a1 Prupe.2G101500_v2.0.a1 Prupe.2G101600_v2.0.a1 Prupe.5G228000_v2.0.a1 Prupe.5G228100_v2.0.a1 Prupe.8G210200_v2.0.a1 Prupe.8G210300_v2.0.a1 Prupe.8G210400_v2.0.a1 Prupe.8G210500_v2.0.a1 Prupe.8G210600_v2.0.a1 Prupe.8G210700_v2.0.a1 Prupe.8G210800_v2.0.a1 Prupe.8G210800_v2.0.a1
pyrus_communis pycom02g20280 pycom02g20290 pycom02g20300 pycom05g16920 pycom05g16930 pycom05g16940 pycom07g06270 pycom10g14850 pycom10g14860 pycom10g14870 pycom14g19350 pycom16g19480
rosa_chinensis RchiOBHm_Chr1g0327741 RchiOBHm_Chr1g0339611 RchiOBHm_Chr1g0339631 RchiOBHm_Chr1g0339651 RchiOBHm_Chr1g0339671 RchiOBHm_Chr1g0339691 RchiOBHm_Chr1g0339761 RchiOBHm_Chr1g0339771 RchiOBHm_Chr1g0339781 RchiOBHm_Chr1g0364471 RchiOBHm_Chr1g0364481 RchiOBHm_Chr1g0364501 RchiOBHm_Chr1g0364511 RchiOBHm_Chr4g0396351 RchiOBHm_Chr4g0396391 RchiOBHm_Chr4g0396421 RchiOBHm_Chr4g0396431 RchiOBHm_Chr4g0396441 RchiOBHm_Chr4g0396461 RchiOBHm_Chr4g0396521 RchiOBHm_Chr4g0400161 RchiOBHm_Chr6g0285721 RchiOBHm_Chr6g0285731 RchiOBHm_Chr6g0285741 RchiOBHm_Chr6g0285761 RchiOBHm_Chr6g0285771 RchiOBHm_Chr6g0285781 RchiOBHm_Chr6g0285791 RchiOBHm_Chr6g0285801 RchiOBHm_Chr6g0285821 RchiOBHm_Chr6g0285831 RchiOBHm_Chr7g0179081 RchiOBHm_Chr7g0179091 RchiOBHm_Chr7g0179101 RchiOBHm_Chr7g0215201 RchiOBHm_Chr7g0237741
rosa_laevigata RLG00000000971 RLG00000002403 RLG00000005385 RLG00000005386 RLG00000005387 RLG00000009530 RLG00000009533 RLG00000009534 RLG00000009545 RLG00000009547 RLG00000009548 RLG00000012606 RLG00000012607 RLG00000012608 RLG00000012609 RLG00000012612 RLG00000012613 RLG00000012614 RLG00000015071 RLG00000020454 RLG00000020455 RLG00000027472 RLG00000027473 RLG00000027474 RLG00000027477 RLG00000029240 RLG00000029241
rosa_multiflora Rmu_co8321391.1_g000001 Rmu_co8330237.1_g000001 Rmu_sc0000037.1_g000019 Rmu_sc0000483.1_g000002 Rmu_sc0000511.1_g000018 Rmu_sc0000888.1_g000016 Rmu_sc0000888.1_g000017 Rmu_sc0001356.1_g000009 Rmu_sc0001356.1_g000010 Rmu_sc0001781.1_g000011 Rmu_sc0001781.1_g000020 Rmu_sc0001781.1_g000022 Rmu_sc0001781.1_g000023 Rmu_sc0001781.1_g000043 Rmu_sc0002862.1_g000013 Rmu_sc0003707.1_g000006 Rmu_sc0003707.1_g000007 Rmu_sc0003919.1_g000009 Rmu_sc0004321.1_g000006 Rmu_sc0005500.1_g000001 Rmu_sc0007814.1_g000001 Rmu_sc0007814.1_g000002 Rmu_sc0007814.1_g000010 Rmu_sc0009238.1_g000007 Rmu_sc0009409.1_g000003 Rmu_sc0011138.1_g000004 Rmu_sc0013252.1_g000003 Rmu_sc0017632.1_g000005 Rmu_sc0021325.1_g000002 Rmu_sc0021325.1_g000004 Rmu_sc0021325.1_g000005 Rmu_sc0021325.1_g000008 Rmu_sc0021325.1_g000009 Rmu_sc0028323.1_g000001 Rmu_sc0036111.1_g000001 Rmu_sc0041231.1_g000001 Rmu_ssc0000067.1_g000034 Rmu_ssc0000234.1_g000019 Rmu_ssc0000278.1_g000016
rosa_roxburghii Rroxscaffold_3G00244460 Rroxscaffold_3G00274390 Rroxscaffold_3G00274400 Rroxscaffold_3G00274410 Rroxscaffold_4G00291800 Rroxscaffold_4G00291810 Rroxscaffold_4G00292220 Rroxscaffold_4G00292230 Rroxscaffold_4G00292250 Rroxscaffold_4G00313630 Rroxscaffold_4G00313640 Rroxscaffold_4G00313650 Rroxscaffold_4G00313660 Rroxscaffold_4G00313670 Rroxscaffold_4G00313690 Rroxscaffold_5G00341170 Rroxscaffold_5G00341180 Rroxscaffold_5G00341200 Rroxscaffold_5G00341210 Rroxscaffold_5G00341340 Rroxscaffold_5G00341350 Rroxscaffold_5G00341360 Rroxscaffold_5G00341380 Rroxscaffold_5G00345120 Rroxscaffold_7G00182670 Rroxscaffold_7G00182680 Rroxscaffold_7G00182700 Rroxscaffold_7G00182710 Rroxscaffold_7G00182730 Rroxscaffold_7G00182770 Rroxscaffold_7G00182790 Rroxscaffold_7G00182800 Rroxscaffold_7G00212460
rosa_rugosa Rorug01G0139800.1 Rorug01G0140000.1 Rorug03G0349500 Rorug03G0349500 Rorug03G0349500 Rorug03G0349600 Rorug03G0349600 Rorug04G0023100 Rorug05G0538200 Rorug06G0176800 Rorug06G0177100 Rorug06G0420800 Rorug06G0420900 Rorug06G0421000 Rorug07G0307700
rosa_samantha Rh1AG086600 Rh1AG324800 Rh1DG318900 Rh4AG067600 Rh4AG068400 Rh4AG069200 Rh4BG096900 Rh4CG073400 Rh4CG073900 Rh4CG074500 Rh4DG063500 Rh4DG063700 Rh4DG063800 Rh4DG064000 Rh4DG093500 Rh6AG288300 Rh6AG288400 Rh6AG288500 Rh6AG288600 Rh6AG288700 Rh6AG288800 Rh6BG289900 Rh6BG290000 Rh6BG290100 Rh6BG290400 Rh6BG290800 Rh6BG290900 Rh6CG047000 Rh6CG290900 Rh6CG291000 Rh6CG291100 Rh6CG291300 Rh6CG291400 Rh6CG291500 Rh6CG291600 Rh6CG291700 Rh6CG291800 Rh6DG042500 Rh7AG020300 Rh7AG287600 Rh7BG020000 Rh7CG021200 Rh7CG021400 Rh7CG307400 Rh7DG020900
rosa_wichuraiana Rw0G006240 Rw0G019430 Rw1G013000 Rw1G013020 Rw1G013040 Rw1G013070 Rw1G013090 Rw1G028790 Rw1G028800 Rw1G028810 Rw4G005480 Rw4G005500 Rw4G005520 Rw4G005530 Rw4G005540 Rw4G005560 Rw4G005570 Rw6G004910 Rw6G024770 Rw6G024780 Rw6G024790 Rw6G024800 Rw6G024810 Rw6G024820 Rw6G024830 Rw6G024840 Rw6G024850 Rw6G024860 Rw6G024870 Rw6G024880 Rw6G024890 Rw7G001680 Rw7G001690 Rw7G001700 Rw7G038360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 45
AccII CGCG 1 cut(s) 516
AciI CCGC 3 cut(s) 177, 514, 516
AclWI GGATC 1 cut(s) 251
AcoI YGGCCR 1 cut(s) 230
AcsI RAATTY 3 cut(s) 83, 332, 472
AcuI CTGAAG 1 cut(s) 92
AfaI GTAC 1 cut(s) 137
AfiI CCNNNNNNNGG 1 cut(s) 515
AgsI TTSAA 6 cut(s) 151, 212, 221, 299, 478, 546
AluBI AGCT 1 cut(s) 16
AluI AGCT 1 cut(s) 16
AlwI GGATC 1 cut(s) 251
AlwNI CAGNNNCTG 1 cut(s) 191
Ama87I CYCGRG 1 cut(s) 279
AoxI GGCC 4 cut(s) 29, 230, 316, 435
ApoI RAATTY 3 cut(s) 83, 332, 472
ArsI GACNNNNNNTTYG 2 cut(s) 359, 391
AsuC2I CCSGG 1 cut(s) 161
AsuHPI GGTGA 1 cut(s) 356
AvaI CYCGRG 1 cut(s) 279
BalI TGGCCA 1 cut(s) 232
BanII GRGCYC 2 cut(s) 64, 469
BarI GAAGNNNNNNTAC 1 cut(s) 32
BbsI GAAGAC 1 cut(s) 316
BcnI CCSGG 1 cut(s) 161
BfaI CTAG 2 cut(s) 33, 386
BfmI CTRYAG 2 cut(s) 46, 354
BisI GCNGC 1 cut(s) 178
BlsI GCNGC 1 cut(s) 179
Bme1390I CCNGG 1 cut(s) 161
BmeT110I CYCGRG 1 cut(s) 279
BmrFI CCNGG 1 cut(s) 161
BmrI ACTGGG 2 cut(s) 29, 137
BmsI GCATC 1 cut(s) 411
BmuI ACTGGG 2 cut(s) 29, 137
BpiI GAAGAC 1 cut(s) 316
BpuMI CCSGG 1 cut(s) 161
BsaJI CCNNGG 3 cut(s) 172, 273, 514
BsaXI ACNNNNNCTCC 2 cut(s) 411, 441
Bsc4I CCNNNNNNNGG 1 cut(s) 515
Bse1I ACTGG 3 cut(s) 24, 143, 395
Bse3DI GCAATG 1 cut(s) 369
BseDI CCNNGG 3 cut(s) 172, 273, 514
BseGI GGATG 3 cut(s) 10, 138, 204
BseLI CCNNNNNNNGG 1 cut(s) 515
BseMI GCAATG 1 cut(s) 369
BseNI ACTGG 3 cut(s) 24, 143, 395
Bsh1236I CGCG 1 cut(s) 516
Bsh1285I CGRYCG 1 cut(s) 514
BshFI GGCC 4 cut(s) 31, 232, 318, 437
BsiEI CGRYCG 1 cut(s) 514
BsiHKCI CYCGRG 1 cut(s) 279
BsiSI CCGG 1 cut(s) 161
BslFI GGGAC 1 cut(s) 143
BslI CCNNNNNNNGG 1 cut(s) 515
BsmFI GGGAC 1 cut(s) 143
BsmI GAATGC 1 cut(s) 387
BsnI GGCC 4 cut(s) 31, 232, 318, 437
BsoBI CYCGRG 1 cut(s) 279
Bsp1286I GDGCHC 2 cut(s) 64, 469
Bsp1407I TGTACA 1 cut(s) 135
Bsp143I GATC 2 cut(s) 256, 301
Bsp19I CCATGG 1 cut(s) 172
BspACI CCGC 3 cut(s) 177, 514, 516
BspANI GGCC 4 cut(s) 31, 232, 318, 437
BspFNI CGCG 1 cut(s) 516
BspPI GGATC 1 cut(s) 251
BsrDI GCAATG 1 cut(s) 369
BsrGI TGTACA 1 cut(s) 135
BsrI ACTGG 3 cut(s) 24, 143, 395
BssECI CCNNGG 3 cut(s) 172, 273, 514
BssMI GATC 2 cut(s) 256, 301
BssT1I CCWWGG 2 cut(s) 172, 273
BstAUI TGTACA 1 cut(s) 135
BstC8I GCNNGC 3 cut(s) 455, 459, 528
BstDSI CCRYGG 2 cut(s) 172, 514
BstF5I GGATG 3 cut(s) 10, 138, 204
BstFNI CGCG 1 cut(s) 516
BstKTI GATC 2 cut(s) 259, 304
BstMBI GATC 2 cut(s) 256, 301
BstMCI CGRYCG 1 cut(s) 514
BstMWI GCNNNNNNNGC 1 cut(s) 454
BstNSI RCATGY 1 cut(s) 461
BstSCI CCNGG 1 cut(s) 159
BstSFI CTRYAG 2 cut(s) 46, 354
BstUI CGCG 1 cut(s) 516
BstV2I GAAGAC 1 cut(s) 316
BstX2I RGATCY 1 cut(s) 256
BstYI RGATCY 1 cut(s) 256
BsuRI GGCC 4 cut(s) 31, 232, 318, 437
BtgI CCRYGG 2 cut(s) 172, 514
BtsCI GGATG 3 cut(s) 10, 138, 204
Cac8I GCNNGC 3 cut(s) 455, 459, 528
CaiI CAGNNNCTG 1 cut(s) 191
Cfr42I CCGCGG 1 cut(s) 517
Csp6I GTAC 1 cut(s) 136
CviAII CATG 4 cut(s) 173, 263, 458, 462
CviQI GTAC 1 cut(s) 136
DpnI GATC 2 cut(s) 258, 303
DpnII GATC 2 cut(s) 256, 301
EaeI YGGCCR 1 cut(s) 230
Eco130I CCWWGG 2 cut(s) 172, 273
Eco147I AGGCCT 1 cut(s) 318
Eco24I GRGCYC 2 cut(s) 64, 469
Eco57I CTGAAG 1 cut(s) 92
Eco88I CYCGRG 1 cut(s) 279
EcoT14I CCWWGG 2 cut(s) 172, 273
EcoT22I ATGCAT 1 cut(s) 463
EcoT38I GRGCYC 2 cut(s) 64, 469
ErhI CCWWGG 2 cut(s) 172, 273
FaeI CATG 4 cut(s) 176, 266, 461, 465
FaiI YATR 8 cut(s) 58, 95, 174, 264, 356, 431, 459, 463
FaqI GGGAC 1 cut(s) 143
FatI CATG 4 cut(s) 172, 262, 457, 461
FblI GTMKAC 1 cut(s) 45
Fnu4HI GCNGC 1 cut(s) 178
FokI GGATG 3 cut(s) 17, 125, 191
FriOI GRGCYC 2 cut(s) 64, 469
Fsp4HI GCNGC 1 cut(s) 178
FspBI CTAG 2 cut(s) 33, 386
GluI GCNGC 1 cut(s) 178
HaeIII GGCC 4 cut(s) 31, 232, 318, 437
HapII CCGG 1 cut(s) 161
Hin1II CATG 4 cut(s) 176, 266, 461, 465
HinfI GANTC 2 cut(s) 24, 194
HpaII CCGG 1 cut(s) 161
HphI GGTGA 1 cut(s) 356
Hpy166II GTNNAC 3 cut(s) 46, 122, 367
Hpy188III TCNNGA 3 cut(s) 296, 509, 546
Hpy8I GTNNAC 3 cut(s) 46, 122, 367
HpyAV CCTTC 3 cut(s) 67, 418, 515
HpyCH4V TGCA 5 cut(s) 323, 374, 402, 457, 461
HpyF10VI GCNNNNNNNGC 1 cut(s) 454
Hsp92II CATG 4 cut(s) 176, 266, 461, 465
KspI CCGCGG 1 cut(s) 517
Kzo9I GATC 2 cut(s) 256, 301
LpnPI CCDG 8 cut(s) 5, 13, 156, 174, 341, 376, 451, 501
LweI GCATC 1 cut(s) 411
MaeI CTAG 2 cut(s) 33, 386
MaeIII GTNAC 1 cut(s) 344
MalI GATC 2 cut(s) 258, 303
MboI GATC 2 cut(s) 256, 301
MboII GAAGA 4 cut(s) 233, 311, 321, 419
MflI RGATCY 1 cut(s) 256
MhlI GDGCHC 2 cut(s) 64, 469
MlsI TGGCCA 1 cut(s) 232
MluCI AATT 3 cut(s) 83, 332, 472
MluNI TGGCCA 1 cut(s) 232
MmeI TCCRAC 1 cut(s) 135
MnlI CCTC 3 cut(s) 270, 427, 459
Mox20I TGGCCA 1 cut(s) 232
Mph1103I ATGCAT 1 cut(s) 463
MscI TGGCCA 1 cut(s) 232
MseI TTAA 1 cut(s) 559
Msp20I TGGCCA 1 cut(s) 232
MspA1I CMGCKG 1 cut(s) 516
MspI CCGG 1 cut(s) 161
MspR9I CCNGG 1 cut(s) 161
Mva1269I GAATGC 1 cut(s) 387
MvnI CGCG 1 cut(s) 516
MwoI GCNNNNNNNGC 1 cut(s) 454
NciI CCSGG 1 cut(s) 161
NcoI CCATGG 1 cut(s) 172
NdeII GATC 2 cut(s) 256, 301
NlaIII CATG 4 cut(s) 176, 266, 461, 465
NmuCI GTSAC 1 cut(s) 344
NsiI ATGCAT 1 cut(s) 463
NspI RCATGY 1 cut(s) 461
PaeI GCATGC 1 cut(s) 461
PaeR7I CTCGAG 1 cut(s) 279
PceI AGGCCT 1 cut(s) 318
PctI GAATGC 1 cut(s) 387
PfeI GAWTC 2 cut(s) 24, 194
PkrI GCNGC 1 cut(s) 179
PspXI VCTCGAGB 1 cut(s) 279
PstNI CAGNNNCTG 1 cut(s) 191
PsuI RGATCY 1 cut(s) 256
RsaI GTAC 1 cut(s) 137
RsaNI GTAC 1 cut(s) 136
SacII CCGCGG 1 cut(s) 517
SaqAI TTAA 1 cut(s) 559
SatI GCNGC 1 cut(s) 178
Sau3AI GATC 2 cut(s) 256, 301
ScrFI CCNGG 1 cut(s) 161
SduI GDGCHC 2 cut(s) 64, 469
SetI ASST 5 cut(s) 18, 108, 361, 429, 507
SfaNI GCATC 1 cut(s) 411
SfcI CTRYAG 2 cut(s) 46, 354
Sfr274I CTCGAG 1 cut(s) 279
Sfr303I CCGCGG 1 cut(s) 517
SgrBI CCGCGG 1 cut(s) 517
SlaI CTCGAG 1 cut(s) 279
SmlI CTYRAG 1 cut(s) 279
SmoI CTYRAG 1 cut(s) 279
SphI GCATGC 1 cut(s) 461
Sse9I AATT 3 cut(s) 83, 332, 472
SseBI AGGCCT 1 cut(s) 318
SsiI CCGC 3 cut(s) 177, 514, 516
SspMI CTAG 2 cut(s) 33, 386
StuI AGGCCT 1 cut(s) 318
StyD4I CCNGG 1 cut(s) 159
StyI CCWWGG 2 cut(s) 172, 273
TaqI TCGA 3 cut(s) 87, 280, 405
TasI AATT 3 cut(s) 83, 332, 472
TatI WGTACW 1 cut(s) 135
TauI GCSGC 1 cut(s) 180
TfiI GAWTC 2 cut(s) 24, 194
Tru1I TTAA 1 cut(s) 559
Tru9I TTAA 1 cut(s) 559
TseFI GTSAC 1 cut(s) 344
Tsp45I GTSAC 1 cut(s) 344
TspDTI ATGAA 1 cut(s) 21
XapI RAATTY 3 cut(s) 83, 332, 472
XceI RCATGY 1 cut(s) 461
XcmI CCANNNNNNNNNTGG 1 cut(s) 335
XhoI CTCGAG 1 cut(s) 279
XmiI GTMKAC 1 cut(s) 45
XspI CTAG 2 cut(s) 33, 386
Zsp2I ATGCAT 1 cut(s) 463
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.