Rroxscaffold_5G00345120
ERF Family

Belongs to the GST superfamily

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Forward (+)
15417803 .. 15418566
764 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00345120.1

Sequence Viewer

Length: 588 bp
ATGGCAGAAGTCAAGCTCTTTACGACATGGTCAAGCTCTTTTGCTTTGAGGATAGTTTGGGCATTGAAGCTCAAAGATGTCCCATATGATACCATATTTGAAGATCTCTCAAACAAAAGCCCTTTACTTCTTCAATACAACCTCATTCATAAGAAGGTTCCAGTGCTTATGCTCAATGGAAAATCAATTGCTGAATCTTTGGTGATCCTTGAATACATTGAGGAAACATGGAAACAAAATCCTTTGCTACCTGAAGATCTTCACGATAAAGCCGCTGCACGATTTTGGGCCAAATTTGGTGATGACAAGATCGATATACACAATAAAGTTTGGGACCGGAAAGAGCAAGAGGAAGCTATTGTGAAAGCAAGGGAGAACTTGAAGTACTTGCAAGAAGAGCTAAAGGGAAAGAAATTCTTTGTGGGAAAGCAAATTGGATTAGCAGAGATCGCGCTCAGATGGCTTGCACACCATGAGAACGTATTTGAAGAGGTAGCTAGCATGAAGCTGATAGCAGAAGATGAGTTCCCATTGTTATCCCAATGGCAAAAGACTTTATCAGATGCTCCTATAATCAAAGAGAATTGA

Protein Analysis

195

Amino Acids

22.73

Weight (kDa)

5.8

Isoelectric Point (pI)

44.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GST_N PF02798 3 - 75 2.5e-17 Glutathione S-transferase, N-terminal domain
GST_N_3 PF13417 6 - 78 1.4e-11 Glutathione S-transferase, N-terminal domain
GST_N_2 PF13409 12 - 76 1.4e-12 Glutathione S-transferase, N-terminal domain
GST_C PF00043 112 - 188 4.1e-09 Glutathione S-transferase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000081)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G29420
fragaria_vesca FvH4_2g20010 FvH4_2g20020 FvH4_2g20030 FvH4_2g20060 FvH4_2g20070 FvH4_2g20080 FvH4_2g20091 FvH4_2g20110 FvH4_4g05320 FvH4_4g05350 FvH4_4g05360 FvH4_4g12720 FvH4_5g16920 FvH4_5g16920 FvH4_5g16920 FvH4_5g16920 FvH4_5g36020 FvH4_5g36870 FvH4_7g07360 FvH4_7g07390 FvH4_7g09460 FvH4_7g09460 FvH4_7g09460 FvH4_7g09460 FvH4_7g09460
malus_domestica MD00G1136300.v1.1 MD02G1236000.v1.1 MD02G1236100.v1.1 MD05G1184200.v1.1 MD05G1184300.v1.1 MD05G1184400.v1.1 MD05G1184600.v1.1 MD10G1172100.v1.1 MD10G1172200.v1.1 MD10G1172300.v1.1 MD13G1227600.v1.1 MD14G1232100.v1.1 MD14G1232200.v1.1 MD16G1011600.v1.1 MD16G1232800.v1.1 MD16G1232900.v1.1
prunus_persica Prupe.1G039900_v2.0.a1 Prupe.1G054800_v2.0.a1 Prupe.1G054900_v2.0.a1 Prupe.1G055000_v2.0.a1 Prupe.1G055300_v2.0.a1 Prupe.1G055900_v2.0.a1 Prupe.1G056000_v2.0.a1 Prupe.1G056100_v2.0.a1 Prupe.1G526000_v2.0.a1 Prupe.2G101400_v2.0.a1 Prupe.2G101500_v2.0.a1 Prupe.2G101600_v2.0.a1 Prupe.5G228000_v2.0.a1 Prupe.5G228100_v2.0.a1 Prupe.8G210200_v2.0.a1 Prupe.8G210300_v2.0.a1 Prupe.8G210400_v2.0.a1 Prupe.8G210500_v2.0.a1 Prupe.8G210600_v2.0.a1 Prupe.8G210700_v2.0.a1 Prupe.8G210800_v2.0.a1 Prupe.8G210800_v2.0.a1
pyrus_communis pycom02g20280 pycom02g20290 pycom02g20300 pycom05g16920 pycom05g16930 pycom05g16940 pycom07g06270 pycom10g14850 pycom10g14860 pycom10g14870 pycom14g19350 pycom16g19480
rosa_chinensis RchiOBHm_Chr1g0327741 RchiOBHm_Chr1g0339611 RchiOBHm_Chr1g0339631 RchiOBHm_Chr1g0339651 RchiOBHm_Chr1g0339671 RchiOBHm_Chr1g0339691 RchiOBHm_Chr1g0339761 RchiOBHm_Chr1g0339771 RchiOBHm_Chr1g0339781 RchiOBHm_Chr1g0364471 RchiOBHm_Chr1g0364481 RchiOBHm_Chr1g0364501 RchiOBHm_Chr1g0364511 RchiOBHm_Chr4g0396351 RchiOBHm_Chr4g0396391 RchiOBHm_Chr4g0396421 RchiOBHm_Chr4g0396431 RchiOBHm_Chr4g0396441 RchiOBHm_Chr4g0396461 RchiOBHm_Chr4g0396521 RchiOBHm_Chr4g0400161 RchiOBHm_Chr6g0285721 RchiOBHm_Chr6g0285731 RchiOBHm_Chr6g0285741 RchiOBHm_Chr6g0285761 RchiOBHm_Chr6g0285771 RchiOBHm_Chr6g0285781 RchiOBHm_Chr6g0285791 RchiOBHm_Chr6g0285801 RchiOBHm_Chr6g0285821 RchiOBHm_Chr6g0285831 RchiOBHm_Chr7g0179081 RchiOBHm_Chr7g0179091 RchiOBHm_Chr7g0179101 RchiOBHm_Chr7g0215201 RchiOBHm_Chr7g0237741
rosa_laevigata RLG00000000971 RLG00000002403 RLG00000005385 RLG00000005386 RLG00000005387 RLG00000009530 RLG00000009533 RLG00000009534 RLG00000009545 RLG00000009547 RLG00000009548 RLG00000012606 RLG00000012607 RLG00000012608 RLG00000012609 RLG00000012612 RLG00000012613 RLG00000012614 RLG00000015071 RLG00000020454 RLG00000020455 RLG00000027472 RLG00000027473 RLG00000027474 RLG00000027477 RLG00000029240 RLG00000029241
rosa_multiflora Rmu_co8321391.1_g000001 Rmu_co8330237.1_g000001 Rmu_sc0000037.1_g000019 Rmu_sc0000483.1_g000002 Rmu_sc0000511.1_g000018 Rmu_sc0000888.1_g000016 Rmu_sc0000888.1_g000017 Rmu_sc0001356.1_g000009 Rmu_sc0001356.1_g000010 Rmu_sc0001781.1_g000011 Rmu_sc0001781.1_g000020 Rmu_sc0001781.1_g000022 Rmu_sc0001781.1_g000023 Rmu_sc0001781.1_g000043 Rmu_sc0002862.1_g000013 Rmu_sc0003707.1_g000006 Rmu_sc0003707.1_g000007 Rmu_sc0003919.1_g000009 Rmu_sc0004321.1_g000006 Rmu_sc0005500.1_g000001 Rmu_sc0007814.1_g000001 Rmu_sc0007814.1_g000002 Rmu_sc0007814.1_g000010 Rmu_sc0009238.1_g000007 Rmu_sc0009409.1_g000003 Rmu_sc0011138.1_g000004 Rmu_sc0013252.1_g000003 Rmu_sc0017632.1_g000005 Rmu_sc0021325.1_g000002 Rmu_sc0021325.1_g000004 Rmu_sc0021325.1_g000005 Rmu_sc0021325.1_g000008 Rmu_sc0021325.1_g000009 Rmu_sc0028323.1_g000001 Rmu_sc0036111.1_g000001 Rmu_sc0041231.1_g000001 Rmu_ssc0000067.1_g000034 Rmu_ssc0000234.1_g000019 Rmu_ssc0000278.1_g000016
rosa_roxburghii Rroxscaffold_3G00244460 Rroxscaffold_3G00274390 Rroxscaffold_3G00274400 Rroxscaffold_3G00274410 Rroxscaffold_4G00291800 Rroxscaffold_4G00291810 Rroxscaffold_4G00292220 Rroxscaffold_4G00292230 Rroxscaffold_4G00292250 Rroxscaffold_4G00313630 Rroxscaffold_4G00313640 Rroxscaffold_4G00313650 Rroxscaffold_4G00313660 Rroxscaffold_4G00313670 Rroxscaffold_4G00313690 Rroxscaffold_5G00341170 Rroxscaffold_5G00341180 Rroxscaffold_5G00341200 Rroxscaffold_5G00341210 Rroxscaffold_5G00341340 Rroxscaffold_5G00341350 Rroxscaffold_5G00341360 Rroxscaffold_5G00341380 Rroxscaffold_5G00345120 Rroxscaffold_7G00182670 Rroxscaffold_7G00182680 Rroxscaffold_7G00182700 Rroxscaffold_7G00182710 Rroxscaffold_7G00182730 Rroxscaffold_7G00182770 Rroxscaffold_7G00182790 Rroxscaffold_7G00182800 Rroxscaffold_7G00212460
rosa_rugosa Rorug01G0139800.1 Rorug01G0140000.1 Rorug03G0349500 Rorug03G0349500 Rorug03G0349500 Rorug03G0349600 Rorug03G0349600 Rorug04G0023100 Rorug05G0538200 Rorug06G0176800 Rorug06G0177100 Rorug06G0420800 Rorug06G0420900 Rorug06G0421000 Rorug07G0307700
rosa_samantha Rh1AG086600 Rh1AG324800 Rh1DG318900 Rh4AG067600 Rh4AG068400 Rh4AG069200 Rh4BG096900 Rh4CG073400 Rh4CG073900 Rh4CG074500 Rh4DG063500 Rh4DG063700 Rh4DG063800 Rh4DG064000 Rh4DG093500 Rh6AG288300 Rh6AG288400 Rh6AG288500 Rh6AG288600 Rh6AG288700 Rh6AG288800 Rh6BG289900 Rh6BG290000 Rh6BG290100 Rh6BG290400 Rh6BG290800 Rh6BG290900 Rh6CG047000 Rh6CG290900 Rh6CG291000 Rh6CG291100 Rh6CG291300 Rh6CG291400 Rh6CG291500 Rh6CG291600 Rh6CG291700 Rh6CG291800 Rh6DG042500 Rh7AG020300 Rh7AG287600 Rh7BG020000 Rh7CG021200 Rh7CG021400 Rh7CG307400 Rh7DG020900
rosa_wichuraiana Rw0G006240 Rw0G019430 Rw1G013000 Rw1G013020 Rw1G013040 Rw1G013070 Rw1G013090 Rw1G028790 Rw1G028800 Rw1G028810 Rw4G005480 Rw4G005500 Rw4G005520 Rw4G005530 Rw4G005540 Rw4G005560 Rw4G005570 Rw6G004910 Rw6G024770 Rw6G024780 Rw6G024790 Rw6G024800 Rw6G024810 Rw6G024820 Rw6G024830 Rw6G024840 Rw6G024850 Rw6G024860 Rw6G024870 Rw6G024880 Rw6G024890 Rw7G001680 Rw7G001690 Rw7G001700 Rw7G038360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 452
AciI CCGC 1 cut(s) 273
AclWI GGATC 1 cut(s) 199
AcsI RAATTY 2 cut(s) 293, 413
AcuI CTGAAG 1 cut(s) 273
AfaI GTAC 1 cut(s) 386
AgsI TTSAA 6 cut(s) 67, 101, 134, 212, 382, 488
AluBI AGCT 7 cut(s) 16, 36, 70, 356, 400, 497, 508
AluI AGCT 7 cut(s) 16, 36, 70, 356, 400, 497, 508
AlwI GGATC 1 cut(s) 199
AoxI GGCC 1 cut(s) 288
ApeKI GCWGC 1 cut(s) 275
ApoI RAATTY 2 cut(s) 293, 413
Asp700I GAANNNNTTC 1 cut(s) 258
AspLEI GCGC 1 cut(s) 454
AspS9I GGNCC 2 cut(s) 288, 334
AsuHPI GGTGA 2 cut(s) 214, 311
AsuNHI GCTAGC 1 cut(s) 497
AvaII GGWCC 1 cut(s) 334
BbvI GCAGC 1 cut(s) 262
BccI CCATC 1 cut(s) 453
BfaI CTAG 1 cut(s) 498
BglII AGATCT 2 cut(s) 103, 256
BisI GCNGC 2 cut(s) 273, 276
BlsI GCNGC 2 cut(s) 274, 277
BmcAI AGTACT 1 cut(s) 386
Bme18I GGWCC 1 cut(s) 334
BmgT120I GGNCC 2 cut(s) 288, 334
BmiI GGNNCC 2 cut(s) 159, 335
BmsI GCATC 1 cut(s) 553
BmtI GCTAGC 1 cut(s) 501
Bsa29I ATCGAT 1 cut(s) 312
BsaWI WCCGGW 1 cut(s) 336
Bse1I ACTGG 1 cut(s) 161
BseCI ATCGAT 1 cut(s) 312
BseMII CTCAG 1 cut(s) 469
BseNI ACTGG 1 cut(s) 161
BseXI GCAGC 1 cut(s) 262
BsgI GTGCAG 1 cut(s) 261
Bsh1236I CGCG 1 cut(s) 452
BshFI GGCC 1 cut(s) 290
BshVI ATCGAT 1 cut(s) 312
BsiSI CCGG 1 cut(s) 337
BslFI GGGAC 2 cut(s) 65, 347
BsmFI GGGAC 2 cut(s) 65, 347
BsnI GGCC 1 cut(s) 290
Bsp143I GATC 5 cut(s) 103, 204, 256, 309, 447
BspACI CCGC 1 cut(s) 273
BspANI GGCC 1 cut(s) 290
BspCNI CTCAG 1 cut(s) 468
BspDI ATCGAT 1 cut(s) 312
BspFNI CGCG 1 cut(s) 452
BspLI GGNNCC 2 cut(s) 159, 335
BspOI GCTAGC 1 cut(s) 501
BspPI GGATC 1 cut(s) 199
BspQI GCTCTTC 1 cut(s) 390
BsrI ACTGG 1 cut(s) 161
BssMI GATC 5 cut(s) 103, 204, 256, 309, 447
Bst6I CTCTTC 2 cut(s) 390, 483
BstC8I GCNNGC 2 cut(s) 465, 499
BstDEI CTNAG 1 cut(s) 455
BstFNI CGCG 1 cut(s) 452
BstHHI GCGC 1 cut(s) 454
BstKTI GATC 5 cut(s) 106, 207, 259, 312, 450
BstMBI GATC 5 cut(s) 103, 204, 256, 309, 447
BstMWI GCNNNNNNNGC 3 cut(s) 397, 449, 460
BstUI CGCG 1 cut(s) 452
BstV1I GCAGC 1 cut(s) 262
BstX2I RGATCY 2 cut(s) 103, 256
BstYI RGATCY 2 cut(s) 103, 256
Bsu15I ATCGAT 1 cut(s) 312
BsuRI GGCC 1 cut(s) 290
BsuTUI ATCGAT 1 cut(s) 312
BtsIMutI CAGTG 1 cut(s) 168
Cac8I GCNNGC 2 cut(s) 465, 499
CfoI GCGC 1 cut(s) 454
Cfr13I GGNCC 2 cut(s) 288, 334
ClaI ATCGAT 1 cut(s) 312
Csp6I GTAC 1 cut(s) 385
CviAII CATG 4 cut(s) 27, 228, 473, 502
CviQI GTAC 1 cut(s) 385
DdeI CTNAG 1 cut(s) 455
DpnI GATC 5 cut(s) 105, 206, 258, 311, 449
DpnII GATC 5 cut(s) 103, 204, 256, 309, 447
Eam1104I CTCTTC 2 cut(s) 390, 483
EarI CTCTTC 2 cut(s) 390, 483
Eco47I GGWCC 1 cut(s) 334
Eco57I CTGAAG 1 cut(s) 273
FaeI CATG 4 cut(s) 30, 231, 476, 505
FalI AAGNNNNNCTT 2 cut(s) 401, 433
FaqI GGGAC 2 cut(s) 65, 347
FatI CATG 4 cut(s) 26, 227, 472, 501
FauNDI CATATG 1 cut(s) 85
Fnu4HI GCNGC 2 cut(s) 273, 276
Fsp4HI GCNGC 2 cut(s) 273, 276
FspBI CTAG 1 cut(s) 498
GlaI GCGC 1 cut(s) 453
GluI GCNGC 2 cut(s) 273, 276
HaeIII GGCC 1 cut(s) 290
HapII CCGG 1 cut(s) 337
HhaI GCGC 1 cut(s) 454
Hin1II CATG 4 cut(s) 30, 231, 476, 505
Hin6I GCGC 1 cut(s) 452
HinP1I GCGC 1 cut(s) 452
HinfI GANTC 1 cut(s) 194
HpaII CCGG 1 cut(s) 337
HphI GGTGA 2 cut(s) 214, 311
Hpy188I TCNGA 2 cut(s) 458, 562
Hpy188III TCNNGA 1 cut(s) 263
HpyAV CCTTC 1 cut(s) 148
HpyCH4IV ACGT 1 cut(s) 480
HpyCH4V TGCA 3 cut(s) 278, 391, 467
HpyF10VI GCNNNNNNNGC 3 cut(s) 397, 449, 460
HpyF3I CTNAG 1 cut(s) 455
HpySE526I ACGT 1 cut(s) 480
Hsp92II CATG 4 cut(s) 30, 231, 476, 505
HspAI GCGC 1 cut(s) 452
Kzo9I GATC 5 cut(s) 103, 204, 256, 309, 447
LguI GCTCTTC 1 cut(s) 390
LmnI GCTCC 1 cut(s) 571
LpnPI CCDG 3 cut(s) 174, 264, 350
Lsp1109I GCAGC 1 cut(s) 262
LweI GCATC 1 cut(s) 553
MaeI CTAG 1 cut(s) 498
MaeII ACGT 1 cut(s) 480
MalI GATC 5 cut(s) 105, 206, 258, 311, 449
MboI GATC 5 cut(s) 103, 204, 256, 309, 447
MboII GAAGA 7 cut(s) 113, 122, 251, 266, 407, 500, 530
MfeI CAATTG 1 cut(s) 186
MflI RGATCY 2 cut(s) 103, 256
MluCI AATT 5 cut(s) 186, 293, 413, 432, 583
MnlI CCTC 5 cut(s) 42, 152, 214, 343, 484
MroXI GAANNNNTTC 1 cut(s) 258
MspA1I CMGCKG 1 cut(s) 275
MspI CCGG 1 cut(s) 337
MunI CAATTG 1 cut(s) 186
MvnI CGCG 1 cut(s) 452
MwoI GCNNNNNNNGC 3 cut(s) 397, 449, 460
NdeI CATATG 1 cut(s) 85
NdeII GATC 5 cut(s) 103, 204, 256, 309, 447
NheI GCTAGC 1 cut(s) 497
NlaIII CATG 4 cut(s) 30, 231, 476, 505
NlaIV GGNNCC 2 cut(s) 159, 335
PciSI GCTCTTC 1 cut(s) 390
PdmI GAANNNNTTC 1 cut(s) 258
PfeI GAWTC 1 cut(s) 194
PflFI GACNNNGTC 1 cut(s) 28
PkrI GCNGC 2 cut(s) 274, 277
PspN4I GGNNCC 2 cut(s) 159, 335
PspPI GGNCC 2 cut(s) 288, 334
PsrI GAACNNNNNNTAC 2 cut(s) 368, 400
PsuI RGATCY 2 cut(s) 103, 256
PsyI GACNNNGTC 1 cut(s) 28
RsaI GTAC 1 cut(s) 386
RsaNI GTAC 1 cut(s) 385
SapI GCTCTTC 1 cut(s) 390
SatI GCNGC 2 cut(s) 273, 276
Sau3AI GATC 5 cut(s) 103, 204, 256, 309, 447
Sau96I GGNCC 2 cut(s) 288, 334
ScaI AGTACT 1 cut(s) 386
SfaNI GCATC 1 cut(s) 553
SinI GGWCC 1 cut(s) 334
Sse9I AATT 5 cut(s) 186, 293, 413, 432, 583
SsiI CCGC 1 cut(s) 273
SspMI CTAG 1 cut(s) 498
TaiI ACGT 1 cut(s) 483
TaqI TCGA 1 cut(s) 312
TasI AATT 5 cut(s) 186, 293, 413, 432, 583
TatI WGTACW 1 cut(s) 384
TauI GCSGC 1 cut(s) 275
TfiI GAWTC 1 cut(s) 194
TscAI CASTG 1 cut(s) 168
TseI GCWGC 1 cut(s) 275
TspDTI ATGAA 2 cut(s) 137, 518
TspRI CASTG 1 cut(s) 168
Tth111I GACNNNGTC 1 cut(s) 28
VpaK11BI GGWCC 1 cut(s) 334
XapI RAATTY 2 cut(s) 293, 413
XmnI GAANNNNTTC 1 cut(s) 258
XspI CTAG 1 cut(s) 498
ZrmI AGTACT 1 cut(s) 386
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.