Rw6G004910
ERF Family

Belongs to the GST superfamily

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
Physical Location & Seq
Forward (+)
8082405 .. 8084308
1904 bp
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UTR
Exon/CDS
Intron
Rw6G004910.1

Sequence Viewer

Length: 534 bp
ATGGCAGAAGTCAAGCTCTTTAAGACATGGTCAAGCTTTTTTGCTTTGAGGATAGTTTGGGCACTGAAGCTCAAAGATGTCCTTTGCTTCTTCAACAACCCCATTCATGAGAAGGTTCCAGTGCTTGTGCACAACGGAAAATCAATTGCTGAATCTCTTATTTTTCCACCTATTGTGGAAACATTATGCAGTGAAGAGAAAGAGCAAGAGGAAGCTATTGTGAAAGCAAAGGGGAACTTGAAGTACTTGGAAGGAGGAGAGCTAAAGGGAAAGAAATTCTTTGGGGGAGAGCAAATTGGACTTGCAGATATTGCGCTCGGATGGCTTGCACACCATGAGAACGTGTTTGAAGAGGTAATTAATGTGAAGCCGATAGCAGAAGATGAGTTCCCATTGTTATCGGAATGGCAAAAGACTTTTACACATGTTCCTATGATCAAAGAGAATTGGCCTTCTAGAGACAAACTTTTCACTAAATTTCAGGCTATCTGTGAGCGTGGACTTGTCAAGAAGCTAAAGAATGCACCTAAATGA

Protein Analysis

177

Amino Acids

20.25

Weight (kDa)

7.71

Isoelectric Point (pI)

22.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GST_C PF00043 53 - 142 8.6e-09 Glutathione S-transferase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000081)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G29420
fragaria_vesca FvH4_2g20010 FvH4_2g20020 FvH4_2g20030 FvH4_2g20060 FvH4_2g20070 FvH4_2g20080 FvH4_2g20091 FvH4_2g20110 FvH4_4g05320 FvH4_4g05350 FvH4_4g05360 FvH4_4g12720 FvH4_5g16920 FvH4_5g16920 FvH4_5g16920 FvH4_5g16920 FvH4_5g36020 FvH4_5g36870 FvH4_7g07360 FvH4_7g07390 FvH4_7g09460 FvH4_7g09460 FvH4_7g09460 FvH4_7g09460 FvH4_7g09460
malus_domestica MD00G1136300.v1.1 MD02G1236000.v1.1 MD02G1236100.v1.1 MD05G1184200.v1.1 MD05G1184300.v1.1 MD05G1184400.v1.1 MD05G1184600.v1.1 MD10G1172100.v1.1 MD10G1172200.v1.1 MD10G1172300.v1.1 MD13G1227600.v1.1 MD14G1232100.v1.1 MD14G1232200.v1.1 MD16G1011600.v1.1 MD16G1232800.v1.1 MD16G1232900.v1.1
prunus_persica Prupe.1G039900_v2.0.a1 Prupe.1G054800_v2.0.a1 Prupe.1G054900_v2.0.a1 Prupe.1G055000_v2.0.a1 Prupe.1G055300_v2.0.a1 Prupe.1G055900_v2.0.a1 Prupe.1G056000_v2.0.a1 Prupe.1G056100_v2.0.a1 Prupe.1G526000_v2.0.a1 Prupe.2G101400_v2.0.a1 Prupe.2G101500_v2.0.a1 Prupe.2G101600_v2.0.a1 Prupe.5G228000_v2.0.a1 Prupe.5G228100_v2.0.a1 Prupe.8G210200_v2.0.a1 Prupe.8G210300_v2.0.a1 Prupe.8G210400_v2.0.a1 Prupe.8G210500_v2.0.a1 Prupe.8G210600_v2.0.a1 Prupe.8G210700_v2.0.a1 Prupe.8G210800_v2.0.a1 Prupe.8G210800_v2.0.a1
pyrus_communis pycom02g20280 pycom02g20290 pycom02g20300 pycom05g16920 pycom05g16930 pycom05g16940 pycom07g06270 pycom10g14850 pycom10g14860 pycom10g14870 pycom14g19350 pycom16g19480
rosa_chinensis RchiOBHm_Chr1g0327741 RchiOBHm_Chr1g0339611 RchiOBHm_Chr1g0339631 RchiOBHm_Chr1g0339651 RchiOBHm_Chr1g0339671 RchiOBHm_Chr1g0339691 RchiOBHm_Chr1g0339761 RchiOBHm_Chr1g0339771 RchiOBHm_Chr1g0339781 RchiOBHm_Chr1g0364471 RchiOBHm_Chr1g0364481 RchiOBHm_Chr1g0364501 RchiOBHm_Chr1g0364511 RchiOBHm_Chr4g0396351 RchiOBHm_Chr4g0396391 RchiOBHm_Chr4g0396421 RchiOBHm_Chr4g0396431 RchiOBHm_Chr4g0396441 RchiOBHm_Chr4g0396461 RchiOBHm_Chr4g0396521 RchiOBHm_Chr4g0400161 RchiOBHm_Chr6g0285721 RchiOBHm_Chr6g0285731 RchiOBHm_Chr6g0285741 RchiOBHm_Chr6g0285761 RchiOBHm_Chr6g0285771 RchiOBHm_Chr6g0285781 RchiOBHm_Chr6g0285791 RchiOBHm_Chr6g0285801 RchiOBHm_Chr6g0285821 RchiOBHm_Chr6g0285831 RchiOBHm_Chr7g0179081 RchiOBHm_Chr7g0179091 RchiOBHm_Chr7g0179101 RchiOBHm_Chr7g0215201 RchiOBHm_Chr7g0237741
rosa_laevigata RLG00000000971 RLG00000002403 RLG00000005385 RLG00000005386 RLG00000005387 RLG00000009530 RLG00000009533 RLG00000009534 RLG00000009545 RLG00000009547 RLG00000009548 RLG00000012606 RLG00000012607 RLG00000012608 RLG00000012609 RLG00000012612 RLG00000012613 RLG00000012614 RLG00000015071 RLG00000020454 RLG00000020455 RLG00000027472 RLG00000027473 RLG00000027474 RLG00000027477 RLG00000029240 RLG00000029241
rosa_multiflora Rmu_co8321391.1_g000001 Rmu_co8330237.1_g000001 Rmu_sc0000037.1_g000019 Rmu_sc0000483.1_g000002 Rmu_sc0000511.1_g000018 Rmu_sc0000888.1_g000016 Rmu_sc0000888.1_g000017 Rmu_sc0001356.1_g000009 Rmu_sc0001356.1_g000010 Rmu_sc0001781.1_g000011 Rmu_sc0001781.1_g000020 Rmu_sc0001781.1_g000022 Rmu_sc0001781.1_g000023 Rmu_sc0001781.1_g000043 Rmu_sc0002862.1_g000013 Rmu_sc0003707.1_g000006 Rmu_sc0003707.1_g000007 Rmu_sc0003919.1_g000009 Rmu_sc0004321.1_g000006 Rmu_sc0005500.1_g000001 Rmu_sc0007814.1_g000001 Rmu_sc0007814.1_g000002 Rmu_sc0007814.1_g000010 Rmu_sc0009238.1_g000007 Rmu_sc0009409.1_g000003 Rmu_sc0011138.1_g000004 Rmu_sc0013252.1_g000003 Rmu_sc0017632.1_g000005 Rmu_sc0021325.1_g000002 Rmu_sc0021325.1_g000004 Rmu_sc0021325.1_g000005 Rmu_sc0021325.1_g000008 Rmu_sc0021325.1_g000009 Rmu_sc0028323.1_g000001 Rmu_sc0036111.1_g000001 Rmu_sc0041231.1_g000001 Rmu_ssc0000067.1_g000034 Rmu_ssc0000234.1_g000019 Rmu_ssc0000278.1_g000016
rosa_roxburghii Rroxscaffold_3G00244460 Rroxscaffold_3G00274390 Rroxscaffold_3G00274400 Rroxscaffold_3G00274410 Rroxscaffold_4G00291800 Rroxscaffold_4G00291810 Rroxscaffold_4G00292220 Rroxscaffold_4G00292230 Rroxscaffold_4G00292250 Rroxscaffold_4G00313630 Rroxscaffold_4G00313640 Rroxscaffold_4G00313650 Rroxscaffold_4G00313660 Rroxscaffold_4G00313670 Rroxscaffold_4G00313690 Rroxscaffold_5G00341170 Rroxscaffold_5G00341180 Rroxscaffold_5G00341200 Rroxscaffold_5G00341210 Rroxscaffold_5G00341340 Rroxscaffold_5G00341350 Rroxscaffold_5G00341360 Rroxscaffold_5G00341380 Rroxscaffold_5G00345120 Rroxscaffold_7G00182670 Rroxscaffold_7G00182680 Rroxscaffold_7G00182700 Rroxscaffold_7G00182710 Rroxscaffold_7G00182730 Rroxscaffold_7G00182770 Rroxscaffold_7G00182790 Rroxscaffold_7G00182800 Rroxscaffold_7G00212460
rosa_rugosa Rorug01G0139800.1 Rorug01G0140000.1 Rorug03G0349500 Rorug03G0349500 Rorug03G0349500 Rorug03G0349600 Rorug03G0349600 Rorug04G0023100 Rorug05G0538200 Rorug06G0176800 Rorug06G0177100 Rorug06G0420800 Rorug06G0420900 Rorug06G0421000 Rorug07G0307700
rosa_samantha Rh1AG086600 Rh1AG324800 Rh1DG318900 Rh4AG067600 Rh4AG068400 Rh4AG069200 Rh4BG096900 Rh4CG073400 Rh4CG073900 Rh4CG074500 Rh4DG063500 Rh4DG063700 Rh4DG063800 Rh4DG064000 Rh4DG093500 Rh6AG288300 Rh6AG288400 Rh6AG288500 Rh6AG288600 Rh6AG288700 Rh6AG288800 Rh6BG289900 Rh6BG290000 Rh6BG290100 Rh6BG290400 Rh6BG290800 Rh6BG290900 Rh6CG047000 Rh6CG290900 Rh6CG291000 Rh6CG291100 Rh6CG291300 Rh6CG291400 Rh6CG291500 Rh6CG291600 Rh6CG291700 Rh6CG291800 Rh6DG042500 Rh7AG020300 Rh7AG287600 Rh7BG020000 Rh7CG021200 Rh7CG021400 Rh7CG307400 Rh7DG020900
rosa_wichuraiana Rw0G006240 Rw0G019430 Rw1G013000 Rw1G013020 Rw1G013040 Rw1G013070 Rw1G013090 Rw1G028790 Rw1G028800 Rw1G028810 Rw4G005480 Rw4G005500 Rw4G005520 Rw4G005530 Rw4G005540 Rw4G005560 Rw4G005570 Rw6G004910 Rw6G024770 Rw6G024780 Rw6G024790 Rw6G024800 Rw6G024810 Rw6G024820 Rw6G024830 Rw6G024840 Rw6G024850 Rw6G024860 Rw6G024870 Rw6G024880 Rw6G024890 Rw7G001680 Rw7G001690 Rw7G001700 Rw7G038360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 275, 476
AcuI CTGAAG 1 cut(s) 86
AfaI GTAC 1 cut(s) 245
AflIII ACRYGT 2 cut(s) 342, 424
AgsI TTSAA 3 cut(s) 94, 241, 350
AluBI AGCT 6 cut(s) 16, 36, 70, 215, 262, 514
AluI AGCT 6 cut(s) 16, 36, 70, 215, 262, 514
Alw21I GWGCWC 1 cut(s) 132
Alw26I GTCTC 1 cut(s) 453
Alw44I GTGCAC 1 cut(s) 128
AoxI GGCC 1 cut(s) 449
ApaLI GTGCAC 1 cut(s) 128
ApoI RAATTY 2 cut(s) 275, 476
AseI ATTAAT 1 cut(s) 360
AspLEI GCGC 1 cut(s) 316
BaeGI GKGCMC 2 cut(s) 64, 132
Bbv12I GWGCWC 1 cut(s) 132
BccI CCATC 1 cut(s) 315
BclI TGATCA 1 cut(s) 435
BcoDI GTCTC 1 cut(s) 453
BfaI CTAG 1 cut(s) 456
BmcAI AGTACT 1 cut(s) 245
BmiI GGNNCC 1 cut(s) 117
Bse1I ACTGG 1 cut(s) 119
BseGI GGATG 1 cut(s) 326
BseNI ACTGG 1 cut(s) 119
BseRI GAGGAG 1 cut(s) 270
BseSI GKGCMC 2 cut(s) 64, 132
BshFI GGCC 1 cut(s) 451
BsiHKAI GWGCWC 1 cut(s) 132
BsmAI GTCTC 1 cut(s) 453
BsmI GAATGC 1 cut(s) 526
BsnI GGCC 1 cut(s) 451
Bsp1286I GDGCHC 2 cut(s) 64, 132
Bsp143I GATC 1 cut(s) 435
BspANI GGCC 1 cut(s) 451
BspHI TCATGA 1 cut(s) 106
BspLI GGNNCC 1 cut(s) 117
BsrI ACTGG 1 cut(s) 119
BssMI GATC 1 cut(s) 435
Bst6I CTCTTC 2 cut(s) 189, 345
BstAPI GCANNNNNTGC 1 cut(s) 311
BstC8I GCNNGC 1 cut(s) 327
BstF5I GGATG 1 cut(s) 326
BstHHI GCGC 1 cut(s) 316
BstKTI GATC 1 cut(s) 438
BstMAI GTCTC 1 cut(s) 453
BstMBI GATC 1 cut(s) 435
BstMWI GCNNNNNNNGC 2 cut(s) 311, 322
BstNSI RCATGY 1 cut(s) 428
BstSLI GKGCMC 2 cut(s) 64, 132
BsuRI GGCC 1 cut(s) 451
BtsCI GGATG 1 cut(s) 326
BtsI GCAGTG 1 cut(s) 196
BtsIMutI CAGTG 3 cut(s) 62, 126, 196
Cac8I GCNNGC 1 cut(s) 327
CciI TCATGA 1 cut(s) 106
CfoI GCGC 1 cut(s) 316
Csp6I GTAC 1 cut(s) 244
CviAII CATG 4 cut(s) 27, 107, 335, 425
CviQI GTAC 1 cut(s) 244
DpnI GATC 1 cut(s) 437
DpnII GATC 1 cut(s) 435
Eam1104I CTCTTC 2 cut(s) 189, 345
EarI CTCTTC 2 cut(s) 189, 345
Eco57I CTGAAG 1 cut(s) 86
FaeI CATG 4 cut(s) 30, 110, 338, 428
FaiI YATR 6 cut(s) 28, 108, 187, 336, 426, 434
FalI AAGNNNNNCTT 6 cut(s) 66, 98, 221, 253, 263, 295
FatI CATG 4 cut(s) 26, 106, 334, 424
FbaI TGATCA 1 cut(s) 435
FokI GGATG 1 cut(s) 333
FspBI CTAG 1 cut(s) 456
GlaI GCGC 1 cut(s) 315
HaeIII GGCC 1 cut(s) 451
HhaI GCGC 1 cut(s) 316
Hin1II CATG 4 cut(s) 30, 110, 338, 428
Hin6I GCGC 1 cut(s) 314
HinP1I GCGC 1 cut(s) 314
HindIII AAGCTT 1 cut(s) 34
HinfI GANTC 1 cut(s) 152
Hpy166II GTNNAC 2 cut(s) 130, 500
Hpy188I TCNGA 2 cut(s) 320, 403
Hpy188III TCNNGA 3 cut(s) 107, 456, 508
Hpy8I GTNNAC 2 cut(s) 130, 500
HpyAV CCTTC 3 cut(s) 106, 245, 462
HpyCH4IV ACGT 1 cut(s) 342
HpyCH4V TGCA 5 cut(s) 130, 189, 305, 329, 524
HpyF10VI GCNNNNNNNGC 2 cut(s) 311, 322
HpySE526I ACGT 1 cut(s) 342
Hsp92II CATG 4 cut(s) 30, 110, 338, 428
HspAI GCGC 1 cut(s) 314
Ksp22I TGATCA 1 cut(s) 435
Kzo9I GATC 1 cut(s) 435
LpnPI CCDG 2 cut(s) 132, 467
MaeI CTAG 1 cut(s) 456
MaeII ACGT 1 cut(s) 342
MalI GATC 1 cut(s) 437
MboI GATC 1 cut(s) 435
MboII GAAGA 4 cut(s) 82, 206, 362, 392
MfeI CAATTG 1 cut(s) 144
MhlI GDGCHC 2 cut(s) 64, 132
MluCI AATT 6 cut(s) 144, 275, 294, 357, 445, 476
MnlI CCTC 4 cut(s) 42, 202, 248, 346
MseI TTAA 2 cut(s) 21, 360
MslI CAYNNNNRTG 1 cut(s) 529
MunI CAATTG 1 cut(s) 144
Mva1269I GAATGC 1 cut(s) 526
MwoI GCNNNNNNNGC 2 cut(s) 311, 322
NdeII GATC 1 cut(s) 435
NlaIII CATG 4 cut(s) 30, 110, 338, 428
NlaIV GGNNCC 1 cut(s) 117
NspI RCATGY 1 cut(s) 428
PagI TCATGA 1 cut(s) 106
PciI ACATGT 1 cut(s) 424
PctI GAATGC 1 cut(s) 526
PfeI GAWTC 1 cut(s) 152
PflFI GACNNNGTC 1 cut(s) 28
PscI ACATGT 1 cut(s) 424
PshBI ATTAAT 1 cut(s) 360
PspN4I GGNNCC 1 cut(s) 117
PsrI GAACNNNNNNTAC 2 cut(s) 227, 259
PsyI GACNNNGTC 1 cut(s) 28
RsaI GTAC 1 cut(s) 245
RsaNI GTAC 1 cut(s) 244
RseI CAYNNNNRTG 1 cut(s) 529
SaqAI TTAA 2 cut(s) 21, 360
Sau3AI GATC 1 cut(s) 435
ScaI AGTACT 1 cut(s) 245
SduI GDGCHC 2 cut(s) 64, 132
SmiMI CAYNNNNRTG 1 cut(s) 529
Sse9I AATT 6 cut(s) 144, 275, 294, 357, 445, 476
SspMI CTAG 1 cut(s) 456
TaiI ACGT 1 cut(s) 345
TasI AATT 6 cut(s) 144, 275, 294, 357, 445, 476
TatI WGTACW 1 cut(s) 243
TfiI GAWTC 1 cut(s) 152
Tru1I TTAA 2 cut(s) 21, 360
Tru9I TTAA 2 cut(s) 21, 360
TscAI CASTG 3 cut(s) 69, 126, 196
TspDTI ATGAA 1 cut(s) 95
TspGWI ACGGA 1 cut(s) 150
TspRI CASTG 3 cut(s) 69, 126, 196
Tth111I GACNNNGTC 1 cut(s) 28
VneI GTGCAC 1 cut(s) 128
VspI ATTAAT 1 cut(s) 360
XapI RAATTY 2 cut(s) 275, 476
XbaI TCTAGA 1 cut(s) 455
XceI RCATGY 1 cut(s) 428
XspI CTAG 1 cut(s) 456
ZrmI AGTACT 1 cut(s) 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.