Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0000081

Physical Location & Seq

Genomic Coordinates Forward (+)

26379088 .. 26379671

Gene Structure 584 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g36020.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGTTGGGATTTCTTTGGCCTTCAGTTGTGGAGGTGGATGCTGGTGGGTCGGAGGAGGGCTGGTGTGTACCAGCAGTTATGAGTGCATTCTCAGAGAAAGGGGAAGAGAAAGAGAAGGCTGCGAAAGAAGCTAGAGAAAATCTCAAGATTCTGGAAAGTGGACTAAAGGAAAAGCATTTCTTTGGAGGTGAAAGCATAGGCTTCGTGGACATAGCTGCAGGGTGGATTGGAGTATGGGCTAGAATGGTTGAGAAAATTGCAGAAGTAAATCTAATTGATACCGAGACGACGCCTCTGCTTGATGCTTGGTTCAGAAGAGTCCTTGAAGTTCCAATTATAAAAGAGCCTGCCACCTCAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006163 GO:0006164 GO:0006188 GO:0006189 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009167 GO:0009168 GO:0009259 GO:0009260 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009719 GO:0009725 GO:0009733 GO:0009987 GO:0010033 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0034641 GO:0034654 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046040 GO:0046390 GO:0046483 GO:0050896 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GST_C GST_N

Protein Analysis

121

Amino Acids

13.28

Weight (kDa)

4.78

Isoelectric Point (pI)

38.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_C	PF00043	24 - 110	1.1e-10	Glutathione S-transferase, C-terminal domain
GST_C_2	PF13410	37 - 106	7.9e-07	Glutathione S-transferase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000081)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29420
fragaria_vesca	FvH4_2g20010 FvH4_2g20020 FvH4_2g20030 FvH4_2g20060 FvH4_2g20070 FvH4_2g20080 FvH4_2g20091 FvH4_2g20110 FvH4_4g05320 FvH4_4g05350 FvH4_4g05360 FvH4_4g12720 FvH4_5g16920 FvH4_5g16920 FvH4_5g16920 FvH4_5g16920 FvH4_5g36020 FvH4_5g36870 FvH4_7g07360 FvH4_7g07390 FvH4_7g09460 FvH4_7g09460 FvH4_7g09460 FvH4_7g09460 FvH4_7g09460
malus_domestica	MD00G1136300.v1.1 MD02G1236000.v1.1 MD02G1236100.v1.1 MD05G1184200.v1.1 MD05G1184300.v1.1 MD05G1184400.v1.1 MD05G1184600.v1.1 MD10G1172100.v1.1 MD10G1172200.v1.1 MD10G1172300.v1.1 MD13G1227600.v1.1 MD14G1232100.v1.1 MD14G1232200.v1.1 MD16G1011600.v1.1 MD16G1232800.v1.1 MD16G1232900.v1.1
prunus_persica	Prupe.1G039900_v2.0.a1 Prupe.1G054800_v2.0.a1 Prupe.1G054900_v2.0.a1 Prupe.1G055000_v2.0.a1 Prupe.1G055300_v2.0.a1 Prupe.1G055900_v2.0.a1 Prupe.1G056000_v2.0.a1 Prupe.1G056100_v2.0.a1 Prupe.1G526000_v2.0.a1 Prupe.2G101400_v2.0.a1 Prupe.2G101500_v2.0.a1 Prupe.2G101600_v2.0.a1 Prupe.5G228000_v2.0.a1 Prupe.5G228100_v2.0.a1 Prupe.8G210200_v2.0.a1 Prupe.8G210300_v2.0.a1 Prupe.8G210400_v2.0.a1 Prupe.8G210500_v2.0.a1 Prupe.8G210600_v2.0.a1 Prupe.8G210700_v2.0.a1 Prupe.8G210800_v2.0.a1 Prupe.8G210800_v2.0.a1
pyrus_communis	pycom02g20280 pycom02g20290 pycom02g20300 pycom05g16920 pycom05g16930 pycom05g16940 pycom07g06270 pycom10g14850 pycom10g14860 pycom10g14870 pycom14g19350 pycom16g19480
rosa_chinensis	RchiOBHm_Chr1g0327741 RchiOBHm_Chr1g0339611 RchiOBHm_Chr1g0339631 RchiOBHm_Chr1g0339651 RchiOBHm_Chr1g0339671 RchiOBHm_Chr1g0339691 RchiOBHm_Chr1g0339761 RchiOBHm_Chr1g0339771 RchiOBHm_Chr1g0339781 RchiOBHm_Chr1g0364471 RchiOBHm_Chr1g0364481 RchiOBHm_Chr1g0364501 RchiOBHm_Chr1g0364511 RchiOBHm_Chr4g0396351 RchiOBHm_Chr4g0396391 RchiOBHm_Chr4g0396421 RchiOBHm_Chr4g0396431 RchiOBHm_Chr4g0396441 RchiOBHm_Chr4g0396461 RchiOBHm_Chr4g0396521 RchiOBHm_Chr4g0400161 RchiOBHm_Chr6g0285721 RchiOBHm_Chr6g0285731 RchiOBHm_Chr6g0285741 RchiOBHm_Chr6g0285761 RchiOBHm_Chr6g0285771 RchiOBHm_Chr6g0285781 RchiOBHm_Chr6g0285791 RchiOBHm_Chr6g0285801 RchiOBHm_Chr6g0285821 RchiOBHm_Chr6g0285831 RchiOBHm_Chr7g0179081 RchiOBHm_Chr7g0179091 RchiOBHm_Chr7g0179101 RchiOBHm_Chr7g0215201 RchiOBHm_Chr7g0237741
rosa_laevigata	RLG00000000971 RLG00000002403 RLG00000005385 RLG00000005386 RLG00000005387 RLG00000009530 RLG00000009533 RLG00000009534 RLG00000009545 RLG00000009547 RLG00000009548 RLG00000012606 RLG00000012607 RLG00000012608 RLG00000012609 RLG00000012612 RLG00000012613 RLG00000012614 RLG00000015071 RLG00000020454 RLG00000020455 RLG00000027472 RLG00000027473 RLG00000027474 RLG00000027477 RLG00000029240 RLG00000029241
rosa_multiflora	Rmu_co8321391.1_g000001 Rmu_co8330237.1_g000001 Rmu_sc0000037.1_g000019 Rmu_sc0000483.1_g000002 Rmu_sc0000511.1_g000018 Rmu_sc0000888.1_g000016 Rmu_sc0000888.1_g000017 Rmu_sc0001356.1_g000009 Rmu_sc0001356.1_g000010 Rmu_sc0001781.1_g000011 Rmu_sc0001781.1_g000020 Rmu_sc0001781.1_g000022 Rmu_sc0001781.1_g000023 Rmu_sc0001781.1_g000043 Rmu_sc0002862.1_g000013 Rmu_sc0003707.1_g000006 Rmu_sc0003707.1_g000007 Rmu_sc0003919.1_g000009 Rmu_sc0004321.1_g000006 Rmu_sc0005500.1_g000001 Rmu_sc0007814.1_g000001 Rmu_sc0007814.1_g000002 Rmu_sc0007814.1_g000010 Rmu_sc0009238.1_g000007 Rmu_sc0009409.1_g000003 Rmu_sc0011138.1_g000004 Rmu_sc0013252.1_g000003 Rmu_sc0017632.1_g000005 Rmu_sc0021325.1_g000002 Rmu_sc0021325.1_g000004 Rmu_sc0021325.1_g000005 Rmu_sc0021325.1_g000008 Rmu_sc0021325.1_g000009 Rmu_sc0028323.1_g000001 Rmu_sc0036111.1_g000001 Rmu_sc0041231.1_g000001 Rmu_ssc0000067.1_g000034 Rmu_ssc0000234.1_g000019 Rmu_ssc0000278.1_g000016
rosa_roxburghii	Rroxscaffold_3G00244460 Rroxscaffold_3G00274390 Rroxscaffold_3G00274400 Rroxscaffold_3G00274410 Rroxscaffold_4G00291800 Rroxscaffold_4G00291810 Rroxscaffold_4G00292220 Rroxscaffold_4G00292230 Rroxscaffold_4G00292250 Rroxscaffold_4G00313630 Rroxscaffold_4G00313640 Rroxscaffold_4G00313650 Rroxscaffold_4G00313660 Rroxscaffold_4G00313670 Rroxscaffold_4G00313690 Rroxscaffold_5G00341170 Rroxscaffold_5G00341180 Rroxscaffold_5G00341200 Rroxscaffold_5G00341210 Rroxscaffold_5G00341340 Rroxscaffold_5G00341350 Rroxscaffold_5G00341360 Rroxscaffold_5G00341380 Rroxscaffold_5G00345120 Rroxscaffold_7G00182670 Rroxscaffold_7G00182680 Rroxscaffold_7G00182700 Rroxscaffold_7G00182710 Rroxscaffold_7G00182730 Rroxscaffold_7G00182770 Rroxscaffold_7G00182790 Rroxscaffold_7G00182800 Rroxscaffold_7G00212460
rosa_rugosa	Rorug01G0139800.1 Rorug01G0140000.1 Rorug03G0349500 Rorug03G0349500 Rorug03G0349500 Rorug03G0349600 Rorug03G0349600 Rorug04G0023100 Rorug05G0538200 Rorug06G0176800 Rorug06G0177100 Rorug06G0420800 Rorug06G0420900 Rorug06G0421000 Rorug07G0307700
rosa_samantha	Rh1AG086600 Rh1AG324800 Rh1DG318900 Rh4AG067600 Rh4AG068400 Rh4AG069200 Rh4BG096900 Rh4CG073400 Rh4CG073900 Rh4CG074500 Rh4DG063500 Rh4DG063700 Rh4DG063800 Rh4DG064000 Rh4DG093500 Rh6AG288300 Rh6AG288400 Rh6AG288500 Rh6AG288600 Rh6AG288700 Rh6AG288800 Rh6BG289900 Rh6BG290000 Rh6BG290100 Rh6BG290400 Rh6BG290800 Rh6BG290900 Rh6CG047000 Rh6CG290900 Rh6CG291000 Rh6CG291100 Rh6CG291300 Rh6CG291400 Rh6CG291500 Rh6CG291600 Rh6CG291700 Rh6CG291800 Rh6DG042500 Rh7AG020300 Rh7AG287600 Rh7BG020000 Rh7CG021200 Rh7CG021400 Rh7CG307400 Rh7DG020900
rosa_wichuraiana	Rw0G006240 Rw0G019430 Rw1G013000 Rw1G013020 Rw1G013040 Rw1G013070 Rw1G013090 Rw1G028790 Rw1G028800 Rw1G028810 Rw4G005480 Rw4G005500 Rw4G005520 Rw4G005530 Rw4G005540 Rw4G005560 Rw4G005570 Rw6G004910 Rw6G024770 Rw6G024780 Rw6G024790 Rw6G024800 Rw6G024810 Rw6G024820 Rw6G024830 Rw6G024840 Rw6G024850 Rw6G024860 Rw6G024870 Rw6G024880 Rw6G024890 Rw7G001680 Rw7G001690 Rw7G001700 Rw7G038360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	338
AcuI	CTGAAG	1 cut(s)	6
AcyI	GRCGYC	1 cut(s)	290
AfaI	GTAC	1 cut(s)	69
AgsI	TTSAA	1 cut(s)	326
AluBI	AGCT	2 cut(s)	131, 215
AluI	AGCT	2 cut(s)	131, 215
Alw26I	GTCTC	1 cut(s)	278
AoxI	GGCC	1 cut(s)	17
ApeKI	GCWGC	2 cut(s)	119, 215
AsuHPI	GGTGA	1 cut(s)	200
BbvI	GCAGC	2 cut(s)	106, 202
BcgI	CGANNNNNNTGC	4 cut(s)	184, 218, 277, 311
BcoDI	GTCTC	1 cut(s)	278
BfaI	CTAG	2 cut(s)	132, 240
BfmI	CTRYAG	1 cut(s)	216
BisI	GCNGC	2 cut(s)	120, 216
BlsI	GCNGC	2 cut(s)	121, 217
BmsI	GCATC	2 cut(s)	28, 292
BplI	GAGNNNNNCTC	2 cut(s)	126, 158
BpuEI	CTTGAG	2 cut(s)	128, 340
BsaHI	GRCGYC	1 cut(s)	290
BsaXI	ACNNNNNCTCC	2 cut(s)	47, 77
BseGI	GGATG	1 cut(s)	43
BseMII	CTCAG	1 cut(s)	105
BseRI	GAGGAG	1 cut(s)	68
BseXI	GCAGC	2 cut(s)	106, 202
BshFI	GGCC	1 cut(s)	19
BsmAI	GTCTC	1 cut(s)	278
BsmBI	CGTCTC	1 cut(s)	278
BsmI	GAATGC	1 cut(s)	86
BsnI	GGCC	1 cut(s)	19
BspANI	GGCC	1 cut(s)	19
BspCNI	CTCAG	1 cut(s)	104
BspMAI	CTGCAG	1 cut(s)	220
BssNI	GRCGYC	1 cut(s)	290
Bst6I	CTCTTC	2 cut(s)	99, 310
BstACI	GRCGYC	1 cut(s)	290
BstC8I	GCNNGC	1 cut(s)	348
BstDEI	CTNAG	1 cut(s)	91
BstF5I	GGATG	1 cut(s)	43
BstMAI	GTCTC	1 cut(s)	278
BstMWI	GCNNNNNNNGC	1 cut(s)	128
BstSFI	CTRYAG	1 cut(s)	216
BstV1I	GCAGC	2 cut(s)	106, 202
BsuRI	GGCC	1 cut(s)	19
BtsCI	GGATG	1 cut(s)	43
Cac8I	GCNNGC	1 cut(s)	348
CseI	GACGC	1 cut(s)	298
Csp6I	GTAC	1 cut(s)	68
CviJI	RGCY	8 cut(s)	19, 60, 119, 131, 201, 215, 239, 346
CviKI_1	RGCY	8 cut(s)	19, 60, 119, 131, 201, 215, 239, 346
CviQI	GTAC	1 cut(s)	68
DdeI	CTNAG	1 cut(s)	91
Eam1104I	CTCTTC	2 cut(s)	99, 310
EarI	CTCTTC	2 cut(s)	99, 310
Eco57I	CTGAAG	1 cut(s)	6
Esp3I	CGTCTC	1 cut(s)	278
FaiI	YATR	5 cut(s)	80, 197, 212, 235, 338
FalI	AAGNNNNNCTT	2 cut(s)	164, 196
Fnu4HI	GCNGC	2 cut(s)	120, 216
FokI	GGATG	1 cut(s)	50
Fsp4HI	GCNGC	2 cut(s)	120, 216
FspBI	CTAG	2 cut(s)	132, 240
GluI	GCNGC	2 cut(s)	120, 216
HaeIII	GGCC	1 cut(s)	19
HgaI	GACGC	1 cut(s)	298
Hin1I	GRCGYC	1 cut(s)	290
HinfI	GANTC	2 cut(s)	148, 318
HphI	GGTGA	1 cut(s)	200
Hpy166II	GTNNAC	3 cut(s)	68, 161, 208
Hpy188I	TCNGA	3 cut(s)	52, 94, 314
Hpy188III	TCNNGA	3 cut(s)	145, 152, 357
Hpy8I	GTNNAC	3 cut(s)	68, 161, 208
Hpy99I	CGWCG	1 cut(s)	292
HpyAV	CCTTC	2 cut(s)	30, 109
HpyCH4V	TGCA	3 cut(s)	86, 218, 260
HpyF10VI	GCNNNNNNNGC	1 cut(s)	128
HpyF3I	CTNAG	1 cut(s)	91
Hsp92I	GRCGYC	1 cut(s)	290
LpnPI	CCDG	5 cut(s)	27, 46, 84, 137, 204
Lsp1109I	GCAGC	2 cut(s)	106, 202
LweI	GCATC	2 cut(s)	28, 292
MaeI	CTAG	2 cut(s)	132, 240
MboII	GAAGA	2 cut(s)	116, 327
MluCI	AATT	3 cut(s)	255, 273, 333
MlyI	GAGTC	1 cut(s)	327
MmeI	TCCRAC	1 cut(s)	30
MnlI	CCTC	5 cut(s)	25, 46, 49, 179, 303
Mva1269I	GAATGC	1 cut(s)	86
MwoI	GCNNNNNNNGC	1 cut(s)	128
PctI	GAATGC	1 cut(s)	86
PfeI	GAWTC	1 cut(s)	148
PkrI	GCNGC	2 cut(s)	121, 217
PleI	GAGTC	1 cut(s)	326
PpsI	GAGTC	1 cut(s)	326
PsiI	TTATAA	1 cut(s)	338
PstI	CTGCAG	1 cut(s)	220
RsaI	GTAC	1 cut(s)	69
RsaNI	GTAC	1 cut(s)	68
SatI	GCNGC	2 cut(s)	120, 216
SchI	GAGTC	1 cut(s)	327
SetI	ASST	5 cut(s)	36, 133, 190, 217, 356
SfaNI	GCATC	2 cut(s)	28, 292
SfcI	CTRYAG	1 cut(s)	216
SmlI	CTYRAG	2 cut(s)	143, 355
SmoI	CTYRAG	2 cut(s)	143, 355
Sse9I	AATT	3 cut(s)	255, 273, 333
SspMI	CTAG	2 cut(s)	132, 240
TasI	AATT	3 cut(s)	255, 273, 333
TfiI	GAWTC	1 cut(s)	148
TseI	GCWGC	2 cut(s)	119, 215
XspI	CTAG	2 cut(s)	132, 240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.