Rh6AG288300

Glutathione S-transferase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
Physical Location & Seq
Reverse (-)
48470447 .. 48470719
273 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG288300.1

Sequence Viewer

Length: 273 bp
ATGGAAGAACAAGGGCTTGGAGAAAAGAAATTTTTTGGTGGGGACAAAGTTGGACTGGCAGACTTGGCATTTGGATGGATAGCTGGTTGGCTTCAAGAGATGGAAGAAGCAGCTGGTGTGAAGCTTTTAGAAGTCAACATGTTTCCTCGCTTGGAGGATTGGATCAAGAATTTCAGAGAAGTCACTGTGATCAAGGACAACCTTCCTGGTCATGAAGAATTGTTGGACTATTTCAGGTGCCTAAGAGAGAGGCTTGCTCTATCATCGTCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

90

Amino Acids

10.33

Weight (kDa)

4.73

Isoelectric Point (pI)

37.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GST_C PF00043 6 - 59 5.7e-06 Glutathione S-transferase, C-terminal domain
DUF7962 PF25907 13 - 62 3.4e-06 Domain of unknown function (DUF7962)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000081)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G29420
fragaria_vesca FvH4_2g20010 FvH4_2g20020 FvH4_2g20030 FvH4_2g20060 FvH4_2g20070 FvH4_2g20080 FvH4_2g20091 FvH4_2g20110 FvH4_4g05320 FvH4_4g05350 FvH4_4g05360 FvH4_4g12720 FvH4_5g16920 FvH4_5g16920 FvH4_5g16920 FvH4_5g16920 FvH4_5g36020 FvH4_5g36870 FvH4_7g07360 FvH4_7g07390 FvH4_7g09460 FvH4_7g09460 FvH4_7g09460 FvH4_7g09460 FvH4_7g09460
malus_domestica MD00G1136300.v1.1 MD02G1236000.v1.1 MD02G1236100.v1.1 MD05G1184200.v1.1 MD05G1184300.v1.1 MD05G1184400.v1.1 MD05G1184600.v1.1 MD10G1172100.v1.1 MD10G1172200.v1.1 MD10G1172300.v1.1 MD13G1227600.v1.1 MD14G1232100.v1.1 MD14G1232200.v1.1 MD16G1011600.v1.1 MD16G1232800.v1.1 MD16G1232900.v1.1
prunus_persica Prupe.1G039900_v2.0.a1 Prupe.1G054800_v2.0.a1 Prupe.1G054900_v2.0.a1 Prupe.1G055000_v2.0.a1 Prupe.1G055300_v2.0.a1 Prupe.1G055900_v2.0.a1 Prupe.1G056000_v2.0.a1 Prupe.1G056100_v2.0.a1 Prupe.1G526000_v2.0.a1 Prupe.2G101400_v2.0.a1 Prupe.2G101500_v2.0.a1 Prupe.2G101600_v2.0.a1 Prupe.5G228000_v2.0.a1 Prupe.5G228100_v2.0.a1 Prupe.8G210200_v2.0.a1 Prupe.8G210300_v2.0.a1 Prupe.8G210400_v2.0.a1 Prupe.8G210500_v2.0.a1 Prupe.8G210600_v2.0.a1 Prupe.8G210700_v2.0.a1 Prupe.8G210800_v2.0.a1 Prupe.8G210800_v2.0.a1
pyrus_communis pycom02g20280 pycom02g20290 pycom02g20300 pycom05g16920 pycom05g16930 pycom05g16940 pycom07g06270 pycom10g14850 pycom10g14860 pycom10g14870 pycom14g19350 pycom16g19480
rosa_chinensis RchiOBHm_Chr1g0327741 RchiOBHm_Chr1g0339611 RchiOBHm_Chr1g0339631 RchiOBHm_Chr1g0339651 RchiOBHm_Chr1g0339671 RchiOBHm_Chr1g0339691 RchiOBHm_Chr1g0339761 RchiOBHm_Chr1g0339771 RchiOBHm_Chr1g0339781 RchiOBHm_Chr1g0364471 RchiOBHm_Chr1g0364481 RchiOBHm_Chr1g0364501 RchiOBHm_Chr1g0364511 RchiOBHm_Chr4g0396351 RchiOBHm_Chr4g0396391 RchiOBHm_Chr4g0396421 RchiOBHm_Chr4g0396431 RchiOBHm_Chr4g0396441 RchiOBHm_Chr4g0396461 RchiOBHm_Chr4g0396521 RchiOBHm_Chr4g0400161 RchiOBHm_Chr6g0285721 RchiOBHm_Chr6g0285731 RchiOBHm_Chr6g0285741 RchiOBHm_Chr6g0285761 RchiOBHm_Chr6g0285771 RchiOBHm_Chr6g0285781 RchiOBHm_Chr6g0285791 RchiOBHm_Chr6g0285801 RchiOBHm_Chr6g0285821 RchiOBHm_Chr6g0285831 RchiOBHm_Chr7g0179081 RchiOBHm_Chr7g0179091 RchiOBHm_Chr7g0179101 RchiOBHm_Chr7g0215201 RchiOBHm_Chr7g0237741
rosa_laevigata RLG00000000971 RLG00000002403 RLG00000005385 RLG00000005386 RLG00000005387 RLG00000009530 RLG00000009533 RLG00000009534 RLG00000009545 RLG00000009547 RLG00000009548 RLG00000012606 RLG00000012607 RLG00000012608 RLG00000012609 RLG00000012612 RLG00000012613 RLG00000012614 RLG00000015071 RLG00000020454 RLG00000020455 RLG00000027472 RLG00000027473 RLG00000027474 RLG00000027477 RLG00000029240 RLG00000029241
rosa_multiflora Rmu_co8321391.1_g000001 Rmu_co8330237.1_g000001 Rmu_sc0000037.1_g000019 Rmu_sc0000483.1_g000002 Rmu_sc0000511.1_g000018 Rmu_sc0000888.1_g000016 Rmu_sc0000888.1_g000017 Rmu_sc0001356.1_g000009 Rmu_sc0001356.1_g000010 Rmu_sc0001781.1_g000011 Rmu_sc0001781.1_g000020 Rmu_sc0001781.1_g000022 Rmu_sc0001781.1_g000023 Rmu_sc0001781.1_g000043 Rmu_sc0002862.1_g000013 Rmu_sc0003707.1_g000006 Rmu_sc0003707.1_g000007 Rmu_sc0003919.1_g000009 Rmu_sc0004321.1_g000006 Rmu_sc0005500.1_g000001 Rmu_sc0007814.1_g000001 Rmu_sc0007814.1_g000002 Rmu_sc0007814.1_g000010 Rmu_sc0009238.1_g000007 Rmu_sc0009409.1_g000003 Rmu_sc0011138.1_g000004 Rmu_sc0013252.1_g000003 Rmu_sc0017632.1_g000005 Rmu_sc0021325.1_g000002 Rmu_sc0021325.1_g000004 Rmu_sc0021325.1_g000005 Rmu_sc0021325.1_g000008 Rmu_sc0021325.1_g000009 Rmu_sc0028323.1_g000001 Rmu_sc0036111.1_g000001 Rmu_sc0041231.1_g000001 Rmu_ssc0000067.1_g000034 Rmu_ssc0000234.1_g000019 Rmu_ssc0000278.1_g000016
rosa_roxburghii Rroxscaffold_3G00244460 Rroxscaffold_3G00274390 Rroxscaffold_3G00274400 Rroxscaffold_3G00274410 Rroxscaffold_4G00291800 Rroxscaffold_4G00291810 Rroxscaffold_4G00292220 Rroxscaffold_4G00292230 Rroxscaffold_4G00292250 Rroxscaffold_4G00313630 Rroxscaffold_4G00313640 Rroxscaffold_4G00313650 Rroxscaffold_4G00313660 Rroxscaffold_4G00313670 Rroxscaffold_4G00313690 Rroxscaffold_5G00341170 Rroxscaffold_5G00341180 Rroxscaffold_5G00341200 Rroxscaffold_5G00341210 Rroxscaffold_5G00341340 Rroxscaffold_5G00341350 Rroxscaffold_5G00341360 Rroxscaffold_5G00341380 Rroxscaffold_5G00345120 Rroxscaffold_7G00182670 Rroxscaffold_7G00182680 Rroxscaffold_7G00182700 Rroxscaffold_7G00182710 Rroxscaffold_7G00182730 Rroxscaffold_7G00182770 Rroxscaffold_7G00182790 Rroxscaffold_7G00182800 Rroxscaffold_7G00212460
rosa_rugosa Rorug01G0139800.1 Rorug01G0140000.1 Rorug03G0349500 Rorug03G0349500 Rorug03G0349500 Rorug03G0349600 Rorug03G0349600 Rorug04G0023100 Rorug05G0538200 Rorug06G0176800 Rorug06G0177100 Rorug06G0420800 Rorug06G0420900 Rorug06G0421000 Rorug07G0307700
rosa_samantha Rh1AG086600 Rh1AG324800 Rh1DG318900 Rh4AG067600 Rh4AG068400 Rh4AG069200 Rh4BG096900 Rh4CG073400 Rh4CG073900 Rh4CG074500 Rh4DG063500 Rh4DG063700 Rh4DG063800 Rh4DG064000 Rh4DG093500 Rh6AG288300 Rh6AG288400 Rh6AG288500 Rh6AG288600 Rh6AG288700 Rh6AG288800 Rh6BG289900 Rh6BG290000 Rh6BG290100 Rh6BG290400 Rh6BG290800 Rh6BG290900 Rh6CG047000 Rh6CG290900 Rh6CG291000 Rh6CG291100 Rh6CG291300 Rh6CG291400 Rh6CG291500 Rh6CG291600 Rh6CG291700 Rh6CG291800 Rh6DG042500 Rh7AG020300 Rh7AG287600 Rh7BG020000 Rh7CG021200 Rh7CG021400 Rh7CG307400 Rh7DG020900
rosa_wichuraiana Rw0G006240 Rw0G019430 Rw1G013000 Rw1G013020 Rw1G013040 Rw1G013070 Rw1G013090 Rw1G028790 Rw1G028800 Rw1G028810 Rw4G005480 Rw4G005500 Rw4G005520 Rw4G005530 Rw4G005540 Rw4G005560 Rw4G005570 Rw6G004910 Rw6G024770 Rw6G024780 Rw6G024790 Rw6G024800 Rw6G024810 Rw6G024820 Rw6G024830 Rw6G024840 Rw6G024850 Rw6G024860 Rw6G024870 Rw6G024880 Rw6G024890 Rw7G001680 Rw7G001690 Rw7G001700 Rw7G038360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 237
AclWI GGATC 1 cut(s) 170
AcsI RAATTY 2 cut(s) 29, 169
AflIII ACRYGT 1 cut(s) 138
AgsI TTSAA 1 cut(s) 95
AjnI CCWGG 1 cut(s) 205
AjuI GAANNNNNNNTTGG 1 cut(s) 32
AluBI AGCT 3 cut(s) 83, 113, 124
AluI AGCT 3 cut(s) 83, 113, 124
AlwI GGATC 1 cut(s) 170
ApeKI GCWGC 1 cut(s) 110
ApoI RAATTY 2 cut(s) 29, 169
ArsI GACNNNNNNTTYG 2 cut(s) 53, 85
BanI GGYRCC 1 cut(s) 237
BbvI GCAGC 1 cut(s) 122
BccI CCATC 2 cut(s) 69, 94
BciT130I CCWGG 1 cut(s) 207
BclI TGATCA 1 cut(s) 189
BisI GCNGC 1 cut(s) 111
BlsI GCNGC 1 cut(s) 112
Bme1390I CCNGG 1 cut(s) 207
BmiI GGNNCC 1 cut(s) 239
BmrFI CCNGG 1 cut(s) 207
BplI GAGNNNNNCTC 2 cut(s) 241, 273
Bse1I ACTGG 1 cut(s) 60
BseBI CCWGG 1 cut(s) 207
BseGI GGATG 1 cut(s) 80
BseNI ACTGG 1 cut(s) 60
BseXI GCAGC 1 cut(s) 122
BshNI GGYRCC 1 cut(s) 237
BslFI GGGAC 1 cut(s) 56
BsmFI GGGAC 1 cut(s) 56
Bsp143I GATC 2 cut(s) 162, 189
BspHI TCATGA 1 cut(s) 211
BspLI GGNNCC 1 cut(s) 239
BspPI GGATC 1 cut(s) 170
BspT107I GGYRCC 1 cut(s) 237
BsrI ACTGG 1 cut(s) 60
BssMI GATC 2 cut(s) 162, 189
Bst2UI CCWGG 1 cut(s) 207
Bst4CI ACNGT 1 cut(s) 187
BstC8I GCNNGC 1 cut(s) 255
BstDEI CTNAG 1 cut(s) 242
BstF5I GGATG 1 cut(s) 80
BstKTI GATC 2 cut(s) 165, 192
BstMBI GATC 2 cut(s) 162, 189
BstMWI GCNNNNNNNGC 1 cut(s) 65
BstNI CCWGG 1 cut(s) 207
BstNSI RCATGY 1 cut(s) 142
BstSCI CCNGG 1 cut(s) 205
BstV1I GCAGC 1 cut(s) 122
BtsCI GGATG 1 cut(s) 80
BtsIMutI CAGTG 1 cut(s) 183
Cac8I GCNNGC 1 cut(s) 255
CciI TCATGA 1 cut(s) 211
CviAII CATG 2 cut(s) 139, 212
CviJI RGCY 6 cut(s) 16, 83, 91, 113, 124, 253
CviKI_1 RGCY 6 cut(s) 16, 83, 91, 113, 124, 253
DdeI CTNAG 1 cut(s) 242
DpnI GATC 2 cut(s) 164, 191
DpnII GATC 2 cut(s) 162, 189
EcoRII CCWGG 1 cut(s) 205
FaeI CATG 2 cut(s) 142, 215
FaiI YATR 2 cut(s) 140, 213
FaqI GGGAC 1 cut(s) 56
FatI CATG 2 cut(s) 138, 211
FbaI TGATCA 1 cut(s) 189
Fnu4HI GCNGC 1 cut(s) 111
FokI GGATG 1 cut(s) 87
Fsp4HI GCNGC 1 cut(s) 111
GluI GCNGC 1 cut(s) 111
Hin1II CATG 2 cut(s) 142, 215
HincII GTYRAC 1 cut(s) 136
HindII GTYRAC 1 cut(s) 136
HindIII AAGCTT 1 cut(s) 122
Hpy166II GTNNAC 1 cut(s) 136
Hpy188I TCNGA 1 cut(s) 176
Hpy188III TCNNGA 3 cut(s) 95, 166, 212
Hpy8I GTNNAC 1 cut(s) 136
Hpy99I CGWCG 1 cut(s) 271
HpyAV CCTTC 1 cut(s) 212
HpyCH4III ACNGT 1 cut(s) 187
HpyF10VI GCNNNNNNNGC 1 cut(s) 65
HpyF3I CTNAG 1 cut(s) 242
Hsp92II CATG 2 cut(s) 142, 215
Ksp22I TGATCA 1 cut(s) 189
Kzo9I GATC 2 cut(s) 162, 189
LpnPI CCDG 6 cut(s) 41, 69, 99, 192, 219, 220
Lsp1109I GCAGC 1 cut(s) 122
MaeIII GTNAC 1 cut(s) 181
MalI GATC 2 cut(s) 164, 191
MboI GATC 2 cut(s) 162, 189
MboII GAAGA 3 cut(s) 17, 116, 227
MluCI AATT 3 cut(s) 29, 169, 218
MmeI TCCRAC 2 cut(s) 31, 204
MnlI CCTC 3 cut(s) 148, 156, 243
MslI CAYNNNNRTG 1 cut(s) 73
MspA1I CMGCKG 1 cut(s) 113
MspR9I CCNGG 1 cut(s) 207
MvaI CCWGG 1 cut(s) 207
MwoI GCNNNNNNNGC 1 cut(s) 65
NdeII GATC 2 cut(s) 162, 189
NlaIII CATG 2 cut(s) 142, 215
NlaIV GGNNCC 1 cut(s) 239
NmuCI GTSAC 1 cut(s) 181
NspI RCATGY 1 cut(s) 142
PagI TCATGA 1 cut(s) 211
PciI ACATGT 1 cut(s) 138
PkrI GCNGC 1 cut(s) 112
PscI ACATGT 1 cut(s) 138
Psp6I CCWGG 1 cut(s) 205
PspGI CCWGG 1 cut(s) 205
PspN4I GGNNCC 1 cut(s) 239
PvuII CAGCTG 1 cut(s) 113
RseI CAYNNNNRTG 1 cut(s) 73
SatI GCNGC 1 cut(s) 111
Sau3AI GATC 2 cut(s) 162, 189
ScrFI CCNGG 1 cut(s) 207
SetI ASST 5 cut(s) 85, 115, 126, 204, 239
SmiMI CAYNNNNRTG 1 cut(s) 73
Sse9I AATT 3 cut(s) 29, 169, 218
StyD4I CCNGG 1 cut(s) 205
TaaI ACNGT 1 cut(s) 187
TasI AATT 3 cut(s) 29, 169, 218
TscAI CASTG 1 cut(s) 190
TseFI GTSAC 1 cut(s) 181
TseI GCWGC 1 cut(s) 110
Tsp45I GTSAC 1 cut(s) 181
TspDTI ATGAA 1 cut(s) 228
TspRI CASTG 1 cut(s) 190
XapI RAATTY 2 cut(s) 29, 169
XceI RCATGY 1 cut(s) 142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.