Rh6AG288800

Glutathione transferase GST 23-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000081
Physical Location & Seq
Forward (+)
48531834 .. 48534294
2461 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG288800.1

Sequence Viewer

Length: 402 bp
ATGCAAAGAATTCCTGTGCAATCTTCCCTCCTCTTTTCTCATCGCCCAGTCCTGTTTGGATTTTTCTCTACTGAGGGAGAACAACAAGTGAAAGCAACAGAAGAACGGCAAGAGCAGTTGAAAATCTTGGAAGAGCAGGGCCTCGGTGACAAGAAGTTTTTCGGTGGAGATGAGATTGGAATGGTTGATTTAGAATTTGGATGGCTAGCTTGGTGGCTGGAAGTCTTGAGTGAAGCAGCTGGGGTTAAAGTGATTGAAGTCAAAAGCTTCCCTCGCTTACATGCATGGATTCAAAGGTTCAAGGAGATTCCCACAATCAAAGAGACCCTTCCTGATCGCAGTGCAATGTTGACCTATTTCAAAGATCGAAGAGCAACAATTCTTGCTTCAGCAAAATCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418
Pfam Domains
Protein Families
GST_C GST_C_2 GST_N

Protein Analysis

133

Amino Acids

15.32

Weight (kDa)

6.15

Isoelectric Point (pI)

48.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GST_C PF00043 26 - 104 8.8e-09 Glutathione S-transferase, C-terminal domain
DUF7962 PF25907 30 - 102 2.6e-09 Domain of unknown function (DUF7962)
GST_C_2 PF13410 37 - 99 3.1e-07 Glutathione S-transferase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000081)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G29420
fragaria_vesca FvH4_2g20010 FvH4_2g20020 FvH4_2g20030 FvH4_2g20060 FvH4_2g20070 FvH4_2g20080 FvH4_2g20091 FvH4_2g20110 FvH4_4g05320 FvH4_4g05350 FvH4_4g05360 FvH4_4g12720 FvH4_5g16920 FvH4_5g16920 FvH4_5g16920 FvH4_5g16920 FvH4_5g36020 FvH4_5g36870 FvH4_7g07360 FvH4_7g07390 FvH4_7g09460 FvH4_7g09460 FvH4_7g09460 FvH4_7g09460 FvH4_7g09460
malus_domestica MD00G1136300.v1.1 MD02G1236000.v1.1 MD02G1236100.v1.1 MD05G1184200.v1.1 MD05G1184300.v1.1 MD05G1184400.v1.1 MD05G1184600.v1.1 MD10G1172100.v1.1 MD10G1172200.v1.1 MD10G1172300.v1.1 MD13G1227600.v1.1 MD14G1232100.v1.1 MD14G1232200.v1.1 MD16G1011600.v1.1 MD16G1232800.v1.1 MD16G1232900.v1.1
prunus_persica Prupe.1G039900_v2.0.a1 Prupe.1G054800_v2.0.a1 Prupe.1G054900_v2.0.a1 Prupe.1G055000_v2.0.a1 Prupe.1G055300_v2.0.a1 Prupe.1G055900_v2.0.a1 Prupe.1G056000_v2.0.a1 Prupe.1G056100_v2.0.a1 Prupe.1G526000_v2.0.a1 Prupe.2G101400_v2.0.a1 Prupe.2G101500_v2.0.a1 Prupe.2G101600_v2.0.a1 Prupe.5G228000_v2.0.a1 Prupe.5G228100_v2.0.a1 Prupe.8G210200_v2.0.a1 Prupe.8G210300_v2.0.a1 Prupe.8G210400_v2.0.a1 Prupe.8G210500_v2.0.a1 Prupe.8G210600_v2.0.a1 Prupe.8G210700_v2.0.a1 Prupe.8G210800_v2.0.a1 Prupe.8G210800_v2.0.a1
pyrus_communis pycom02g20280 pycom02g20290 pycom02g20300 pycom05g16920 pycom05g16930 pycom05g16940 pycom07g06270 pycom10g14850 pycom10g14860 pycom10g14870 pycom14g19350 pycom16g19480
rosa_chinensis RchiOBHm_Chr1g0327741 RchiOBHm_Chr1g0339611 RchiOBHm_Chr1g0339631 RchiOBHm_Chr1g0339651 RchiOBHm_Chr1g0339671 RchiOBHm_Chr1g0339691 RchiOBHm_Chr1g0339761 RchiOBHm_Chr1g0339771 RchiOBHm_Chr1g0339781 RchiOBHm_Chr1g0364471 RchiOBHm_Chr1g0364481 RchiOBHm_Chr1g0364501 RchiOBHm_Chr1g0364511 RchiOBHm_Chr4g0396351 RchiOBHm_Chr4g0396391 RchiOBHm_Chr4g0396421 RchiOBHm_Chr4g0396431 RchiOBHm_Chr4g0396441 RchiOBHm_Chr4g0396461 RchiOBHm_Chr4g0396521 RchiOBHm_Chr4g0400161 RchiOBHm_Chr6g0285721 RchiOBHm_Chr6g0285731 RchiOBHm_Chr6g0285741 RchiOBHm_Chr6g0285761 RchiOBHm_Chr6g0285771 RchiOBHm_Chr6g0285781 RchiOBHm_Chr6g0285791 RchiOBHm_Chr6g0285801 RchiOBHm_Chr6g0285821 RchiOBHm_Chr6g0285831 RchiOBHm_Chr7g0179081 RchiOBHm_Chr7g0179091 RchiOBHm_Chr7g0179101 RchiOBHm_Chr7g0215201 RchiOBHm_Chr7g0237741
rosa_laevigata RLG00000000971 RLG00000002403 RLG00000005385 RLG00000005386 RLG00000005387 RLG00000009530 RLG00000009533 RLG00000009534 RLG00000009545 RLG00000009547 RLG00000009548 RLG00000012606 RLG00000012607 RLG00000012608 RLG00000012609 RLG00000012612 RLG00000012613 RLG00000012614 RLG00000015071 RLG00000020454 RLG00000020455 RLG00000027472 RLG00000027473 RLG00000027474 RLG00000027477 RLG00000029240 RLG00000029241
rosa_multiflora Rmu_co8321391.1_g000001 Rmu_co8330237.1_g000001 Rmu_sc0000037.1_g000019 Rmu_sc0000483.1_g000002 Rmu_sc0000511.1_g000018 Rmu_sc0000888.1_g000016 Rmu_sc0000888.1_g000017 Rmu_sc0001356.1_g000009 Rmu_sc0001356.1_g000010 Rmu_sc0001781.1_g000011 Rmu_sc0001781.1_g000020 Rmu_sc0001781.1_g000022 Rmu_sc0001781.1_g000023 Rmu_sc0001781.1_g000043 Rmu_sc0002862.1_g000013 Rmu_sc0003707.1_g000006 Rmu_sc0003707.1_g000007 Rmu_sc0003919.1_g000009 Rmu_sc0004321.1_g000006 Rmu_sc0005500.1_g000001 Rmu_sc0007814.1_g000001 Rmu_sc0007814.1_g000002 Rmu_sc0007814.1_g000010 Rmu_sc0009238.1_g000007 Rmu_sc0009409.1_g000003 Rmu_sc0011138.1_g000004 Rmu_sc0013252.1_g000003 Rmu_sc0017632.1_g000005 Rmu_sc0021325.1_g000002 Rmu_sc0021325.1_g000004 Rmu_sc0021325.1_g000005 Rmu_sc0021325.1_g000008 Rmu_sc0021325.1_g000009 Rmu_sc0028323.1_g000001 Rmu_sc0036111.1_g000001 Rmu_sc0041231.1_g000001 Rmu_ssc0000067.1_g000034 Rmu_ssc0000234.1_g000019 Rmu_ssc0000278.1_g000016
rosa_roxburghii Rroxscaffold_3G00244460 Rroxscaffold_3G00274390 Rroxscaffold_3G00274400 Rroxscaffold_3G00274410 Rroxscaffold_4G00291800 Rroxscaffold_4G00291810 Rroxscaffold_4G00292220 Rroxscaffold_4G00292230 Rroxscaffold_4G00292250 Rroxscaffold_4G00313630 Rroxscaffold_4G00313640 Rroxscaffold_4G00313650 Rroxscaffold_4G00313660 Rroxscaffold_4G00313670 Rroxscaffold_4G00313690 Rroxscaffold_5G00341170 Rroxscaffold_5G00341180 Rroxscaffold_5G00341200 Rroxscaffold_5G00341210 Rroxscaffold_5G00341340 Rroxscaffold_5G00341350 Rroxscaffold_5G00341360 Rroxscaffold_5G00341380 Rroxscaffold_5G00345120 Rroxscaffold_7G00182670 Rroxscaffold_7G00182680 Rroxscaffold_7G00182700 Rroxscaffold_7G00182710 Rroxscaffold_7G00182730 Rroxscaffold_7G00182770 Rroxscaffold_7G00182790 Rroxscaffold_7G00182800 Rroxscaffold_7G00212460
rosa_rugosa Rorug01G0139800.1 Rorug01G0140000.1 Rorug03G0349500 Rorug03G0349500 Rorug03G0349500 Rorug03G0349600 Rorug03G0349600 Rorug04G0023100 Rorug05G0538200 Rorug06G0176800 Rorug06G0177100 Rorug06G0420800 Rorug06G0420900 Rorug06G0421000 Rorug07G0307700
rosa_samantha Rh1AG086600 Rh1AG324800 Rh1DG318900 Rh4AG067600 Rh4AG068400 Rh4AG069200 Rh4BG096900 Rh4CG073400 Rh4CG073900 Rh4CG074500 Rh4DG063500 Rh4DG063700 Rh4DG063800 Rh4DG064000 Rh4DG093500 Rh6AG288300 Rh6AG288400 Rh6AG288500 Rh6AG288600 Rh6AG288700 Rh6AG288800 Rh6BG289900 Rh6BG290000 Rh6BG290100 Rh6BG290400 Rh6BG290800 Rh6BG290900 Rh6CG047000 Rh6CG290900 Rh6CG291000 Rh6CG291100 Rh6CG291300 Rh6CG291400 Rh6CG291500 Rh6CG291600 Rh6CG291700 Rh6CG291800 Rh6DG042500 Rh7AG020300 Rh7AG287600 Rh7BG020000 Rh7CG021200 Rh7CG021400 Rh7CG307400 Rh7DG020900
rosa_wichuraiana Rw0G006240 Rw0G019430 Rw1G013000 Rw1G013020 Rw1G013040 Rw1G013070 Rw1G013090 Rw1G028790 Rw1G028800 Rw1G028810 Rw4G005480 Rw4G005500 Rw4G005520 Rw4G005530 Rw4G005540 Rw4G005560 Rw4G005570 Rw6G004910 Rw6G024770 Rw6G024780 Rw6G024790 Rw6G024800 Rw6G024810 Rw6G024820 Rw6G024830 Rw6G024840 Rw6G024850 Rw6G024860 Rw6G024870 Rw6G024880 Rw6G024890 Rw7G001680 Rw7G001690 Rw7G001700 Rw7G038360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 9, 194
AcuI CTGAAG 1 cut(s) 372
AgsI TTSAA 5 cut(s) 121, 257, 293, 301, 361
AluBI AGCT 3 cut(s) 209, 239, 267
AluI AGCT 3 cut(s) 209, 239, 267
Alw26I GTCTC 1 cut(s) 317
AoxI GGCC 1 cut(s) 139
ApeKI GCWGC 1 cut(s) 236
ApoI RAATTY 2 cut(s) 9, 194
Asp700I GAANNNNTTC 1 cut(s) 158
AspS9I GGNCC 1 cut(s) 139
AsuHPI GGTGA 1 cut(s) 158
AsuNHI GCTAGC 1 cut(s) 205
BbvI GCAGC 1 cut(s) 248
BccI CCATC 1 cut(s) 195
BceAI ACGGC 1 cut(s) 122
BcoDI GTCTC 1 cut(s) 317
BfaI CTAG 1 cut(s) 206
BisI GCNGC 1 cut(s) 237
BlsI GCNGC 1 cut(s) 238
BmgT120I GGNCC 1 cut(s) 139
BmrI ACTGGG 1 cut(s) 41
BmtI GCTAGC 1 cut(s) 209
BmuI ACTGGG 1 cut(s) 41
BpuEI CTTGAG 1 cut(s) 247
BsaI GGTCTC 1 cut(s) 317
BsaJI CCNNGG 1 cut(s) 142
Bse1I ACTGG 1 cut(s) 47
Bse3DI GCAATG 1 cut(s) 351
BseDI CCNNGG 1 cut(s) 142
BseGI GGATG 1 cut(s) 206
BseMI GCAATG 1 cut(s) 351
BseMII CTCAG 1 cut(s) 63
BseNI ACTGG 1 cut(s) 47
BseRI GAGGAG 1 cut(s) 20
BseXI GCAGC 1 cut(s) 248
BseYI CCCAGC 1 cut(s) 239
BshFI GGCC 1 cut(s) 141
BsmAI GTCTC 1 cut(s) 317
BsnI GGCC 1 cut(s) 141
Bso31I GGTCTC 1 cut(s) 317
Bsp143I GATC 2 cut(s) 334, 364
BspANI GGCC 1 cut(s) 141
BspCNI CTCAG 1 cut(s) 64
BspOI GCTAGC 1 cut(s) 209
BspQI GCTCTTC 2 cut(s) 126, 364
BspTNI GGTCTC 1 cut(s) 317
BsrDI GCAATG 1 cut(s) 351
BsrI ACTGG 1 cut(s) 47
BssECI CCNNGG 1 cut(s) 142
BssMI GATC 2 cut(s) 334, 364
Bst6I CTCTTC 2 cut(s) 126, 364
BstC8I GCNNGC 1 cut(s) 207
BstDEI CTNAG 1 cut(s) 72
BstF5I GGATG 1 cut(s) 206
BstKTI GATC 2 cut(s) 337, 367
BstMAI GTCTC 1 cut(s) 317
BstMBI GATC 2 cut(s) 334, 364
BstMWI GCNNNNNNNGC 1 cut(s) 273
BstNSI RCATGY 1 cut(s) 284
BstV1I GCAGC 1 cut(s) 248
BsuRI GGCC 1 cut(s) 141
BtgZI GCGATG 1 cut(s) 26
BtsCI GGATG 1 cut(s) 206
BtsI GCAGTG 1 cut(s) 346
BtsIMutI CAGTG 1 cut(s) 346
Cac8I GCNNGC 1 cut(s) 207
Cfr13I GGNCC 1 cut(s) 139
CviAII CATG 2 cut(s) 281, 285
CviJI RGCY 6 cut(s) 141, 205, 209, 217, 239, 267
CviKI_1 RGCY 6 cut(s) 141, 205, 209, 217, 239, 267
DdeI CTNAG 1 cut(s) 72
DpnI GATC 2 cut(s) 336, 366
DpnII GATC 2 cut(s) 334, 364
Eam1104I CTCTTC 2 cut(s) 126, 364
EarI CTCTTC 2 cut(s) 126, 364
Eco31I GGTCTC 1 cut(s) 317
Eco57I CTGAAG 1 cut(s) 372
EcoO109I RGGNCCY 1 cut(s) 139
EcoRI GAATTC 1 cut(s) 9
EcoT22I ATGCAT 1 cut(s) 286
FaeI CATG 2 cut(s) 284, 288
FaiI YATR 2 cut(s) 282, 286
FalI AAGNNNNNCTT 2 cut(s) 312, 344
FatI CATG 2 cut(s) 280, 284
Fnu4HI GCNGC 1 cut(s) 237
FokI GGATG 1 cut(s) 213
Fsp4HI GCNGC 1 cut(s) 237
FspBI CTAG 1 cut(s) 206
GluI GCNGC 1 cut(s) 237
GsaI CCCAGC 1 cut(s) 243
HaeIII GGCC 1 cut(s) 141
Hin1II CATG 2 cut(s) 284, 288
HincII GTYRAC 1 cut(s) 351
HindII GTYRAC 1 cut(s) 351
HindIII AAGCTT 1 cut(s) 265
HinfI GANTC 2 cut(s) 289, 307
HphI GGTGA 1 cut(s) 158
Hpy166II GTNNAC 1 cut(s) 351
Hpy188III TCNNGA 2 cut(s) 226, 332
Hpy8I GTNNAC 1 cut(s) 351
HpyAV CCTTC 1 cut(s) 338
HpyCH4V TGCA 4 cut(s) 4, 19, 284, 344
HpyF10VI GCNNNNNNNGC 1 cut(s) 273
HpyF3I CTNAG 1 cut(s) 72
Hsp92II CATG 2 cut(s) 284, 288
Kzo9I GATC 2 cut(s) 334, 364
LguI GCTCTTC 2 cut(s) 126, 364
LpnPI CCDG 7 cut(s) 27, 60, 65, 122, 203, 225, 345
Lsp1109I GCAGC 1 cut(s) 248
MaeI CTAG 1 cut(s) 206
MaeIII GTNAC 1 cut(s) 146
MalI GATC 2 cut(s) 336, 366
MboI GATC 2 cut(s) 334, 364
MboII GAAGA 4 cut(s) 15, 113, 143, 381
MluCI AATT 3 cut(s) 9, 194, 378
MnlI CCTC 5 cut(s) 38, 41, 67, 152, 282
Mph1103I ATGCAT 1 cut(s) 286
MroXI GAANNNNTTC 1 cut(s) 158
MseI TTAA 2 cut(s) 246, 400
MspA1I CMGCKG 1 cut(s) 239
MwoI GCNNNNNNNGC 1 cut(s) 273
NdeII GATC 2 cut(s) 334, 364
NheI GCTAGC 1 cut(s) 205
NlaIII CATG 2 cut(s) 284, 288
NmuCI GTSAC 1 cut(s) 146
NsiI ATGCAT 1 cut(s) 286
NspI RCATGY 1 cut(s) 284
PciSI GCTCTTC 2 cut(s) 126, 364
PdmI GAANNNNTTC 1 cut(s) 158
PfeI GAWTC 2 cut(s) 289, 307
PkrI GCNGC 1 cut(s) 238
PspFI CCCAGC 1 cut(s) 239
PspPI GGNCC 1 cut(s) 139
PvuII CAGCTG 1 cut(s) 239
SapI GCTCTTC 2 cut(s) 126, 364
SaqAI TTAA 2 cut(s) 246, 400
SatI GCNGC 1 cut(s) 237
Sau3AI GATC 2 cut(s) 334, 364
Sau96I GGNCC 1 cut(s) 139
SetI ASST 5 cut(s) 211, 241, 269, 299, 356
SmlI CTYRAG 1 cut(s) 226
SmoI CTYRAG 1 cut(s) 226
Sse9I AATT 3 cut(s) 9, 194, 378
SspMI CTAG 1 cut(s) 206
TaqI TCGA 1 cut(s) 367
TasI AATT 3 cut(s) 9, 194, 378
TfiI GAWTC 2 cut(s) 289, 307
Tru1I TTAA 2 cut(s) 246, 400
Tru9I TTAA 2 cut(s) 246, 400
TscAI CASTG 1 cut(s) 346
TseFI GTSAC 1 cut(s) 146
TseI GCWGC 1 cut(s) 236
Tsp45I GTSAC 1 cut(s) 146
TspRI CASTG 1 cut(s) 346
XapI RAATTY 2 cut(s) 9, 194
XceI RCATGY 1 cut(s) 284
XmnI GAANNNNTTC 1 cut(s) 158
XspI CTAG 1 cut(s) 206
Zsp2I ATGCAT 1 cut(s) 286
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.