Rw6G024770

Glutathione S-transferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0000081
Physical Location & Seq
Reverse (-)
47938582 .. 47938987
406 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G024770.1

Sequence Viewer

Length: 339 bp
ATGGAAGAAGTGAAGCTACTAGGAACATGGCCTAGTCCCTTTTGTTACAGGGTCATATGGGCTCTGAAACTGAAGGGTGTGAAGTATGAAGATGTGGAAGAGGACCTCGTCAACAAGAGTGATCGTCTTTTACAGTACAACCCAGTTCATAAGAAGGTACCGGTGCTCGTTCATGGTGGAAAACCGATCTTAGAGTCTACTGTTATTCTTGAATACATTGAGGAGGTGTGGCCACAGAATCCCTTGCTTTCTGATGACCCTTATGAGAGGGCCACGGCTCGGTTTTGGACTAAATTTGGAGAGGACAAGGTAAGATATATTTTGATTAAAGTCGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418
Pfam Domains
Protein Families
GST_C GST_C_2 GST_N

Protein Analysis

112

Amino Acids

13.17

Weight (kDa)

5.72

Isoelectric Point (pI)

34.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GST_N PF02798 3 - 75 2.3e-20 Glutathione S-transferase, N-terminal domain
GST_N_2 PF13409 12 - 75 1.1e-16 Glutathione S-transferase, N-terminal domain
GST_N_3 PF13417 12 - 79 1.2e-15 Glutathione S-transferase, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000081)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G29420
fragaria_vesca FvH4_2g20010 FvH4_2g20020 FvH4_2g20030 FvH4_2g20060 FvH4_2g20070 FvH4_2g20080 FvH4_2g20091 FvH4_2g20110 FvH4_4g05320 FvH4_4g05350 FvH4_4g05360 FvH4_4g12720 FvH4_5g16920 FvH4_5g16920 FvH4_5g16920 FvH4_5g16920 FvH4_5g36020 FvH4_5g36870 FvH4_7g07360 FvH4_7g07390 FvH4_7g09460 FvH4_7g09460 FvH4_7g09460 FvH4_7g09460 FvH4_7g09460
malus_domestica MD00G1136300.v1.1 MD02G1236000.v1.1 MD02G1236100.v1.1 MD05G1184200.v1.1 MD05G1184300.v1.1 MD05G1184400.v1.1 MD05G1184600.v1.1 MD10G1172100.v1.1 MD10G1172200.v1.1 MD10G1172300.v1.1 MD13G1227600.v1.1 MD14G1232100.v1.1 MD14G1232200.v1.1 MD16G1011600.v1.1 MD16G1232800.v1.1 MD16G1232900.v1.1
prunus_persica Prupe.1G039900_v2.0.a1 Prupe.1G054800_v2.0.a1 Prupe.1G054900_v2.0.a1 Prupe.1G055000_v2.0.a1 Prupe.1G055300_v2.0.a1 Prupe.1G055900_v2.0.a1 Prupe.1G056000_v2.0.a1 Prupe.1G056100_v2.0.a1 Prupe.1G526000_v2.0.a1 Prupe.2G101400_v2.0.a1 Prupe.2G101500_v2.0.a1 Prupe.2G101600_v2.0.a1 Prupe.5G228000_v2.0.a1 Prupe.5G228100_v2.0.a1 Prupe.8G210200_v2.0.a1 Prupe.8G210300_v2.0.a1 Prupe.8G210400_v2.0.a1 Prupe.8G210500_v2.0.a1 Prupe.8G210600_v2.0.a1 Prupe.8G210700_v2.0.a1 Prupe.8G210800_v2.0.a1 Prupe.8G210800_v2.0.a1
pyrus_communis pycom02g20280 pycom02g20290 pycom02g20300 pycom05g16920 pycom05g16930 pycom05g16940 pycom07g06270 pycom10g14850 pycom10g14860 pycom10g14870 pycom14g19350 pycom16g19480
rosa_chinensis RchiOBHm_Chr1g0327741 RchiOBHm_Chr1g0339611 RchiOBHm_Chr1g0339631 RchiOBHm_Chr1g0339651 RchiOBHm_Chr1g0339671 RchiOBHm_Chr1g0339691 RchiOBHm_Chr1g0339761 RchiOBHm_Chr1g0339771 RchiOBHm_Chr1g0339781 RchiOBHm_Chr1g0364471 RchiOBHm_Chr1g0364481 RchiOBHm_Chr1g0364501 RchiOBHm_Chr1g0364511 RchiOBHm_Chr4g0396351 RchiOBHm_Chr4g0396391 RchiOBHm_Chr4g0396421 RchiOBHm_Chr4g0396431 RchiOBHm_Chr4g0396441 RchiOBHm_Chr4g0396461 RchiOBHm_Chr4g0396521 RchiOBHm_Chr4g0400161 RchiOBHm_Chr6g0285721 RchiOBHm_Chr6g0285731 RchiOBHm_Chr6g0285741 RchiOBHm_Chr6g0285761 RchiOBHm_Chr6g0285771 RchiOBHm_Chr6g0285781 RchiOBHm_Chr6g0285791 RchiOBHm_Chr6g0285801 RchiOBHm_Chr6g0285821 RchiOBHm_Chr6g0285831 RchiOBHm_Chr7g0179081 RchiOBHm_Chr7g0179091 RchiOBHm_Chr7g0179101 RchiOBHm_Chr7g0215201 RchiOBHm_Chr7g0237741
rosa_laevigata RLG00000000971 RLG00000002403 RLG00000005385 RLG00000005386 RLG00000005387 RLG00000009530 RLG00000009533 RLG00000009534 RLG00000009545 RLG00000009547 RLG00000009548 RLG00000012606 RLG00000012607 RLG00000012608 RLG00000012609 RLG00000012612 RLG00000012613 RLG00000012614 RLG00000015071 RLG00000020454 RLG00000020455 RLG00000027472 RLG00000027473 RLG00000027474 RLG00000027477 RLG00000029240 RLG00000029241
rosa_multiflora Rmu_co8321391.1_g000001 Rmu_co8330237.1_g000001 Rmu_sc0000037.1_g000019 Rmu_sc0000483.1_g000002 Rmu_sc0000511.1_g000018 Rmu_sc0000888.1_g000016 Rmu_sc0000888.1_g000017 Rmu_sc0001356.1_g000009 Rmu_sc0001356.1_g000010 Rmu_sc0001781.1_g000011 Rmu_sc0001781.1_g000020 Rmu_sc0001781.1_g000022 Rmu_sc0001781.1_g000023 Rmu_sc0001781.1_g000043 Rmu_sc0002862.1_g000013 Rmu_sc0003707.1_g000006 Rmu_sc0003707.1_g000007 Rmu_sc0003919.1_g000009 Rmu_sc0004321.1_g000006 Rmu_sc0005500.1_g000001 Rmu_sc0007814.1_g000001 Rmu_sc0007814.1_g000002 Rmu_sc0007814.1_g000010 Rmu_sc0009238.1_g000007 Rmu_sc0009409.1_g000003 Rmu_sc0011138.1_g000004 Rmu_sc0013252.1_g000003 Rmu_sc0017632.1_g000005 Rmu_sc0021325.1_g000002 Rmu_sc0021325.1_g000004 Rmu_sc0021325.1_g000005 Rmu_sc0021325.1_g000008 Rmu_sc0021325.1_g000009 Rmu_sc0028323.1_g000001 Rmu_sc0036111.1_g000001 Rmu_sc0041231.1_g000001 Rmu_ssc0000067.1_g000034 Rmu_ssc0000234.1_g000019 Rmu_ssc0000278.1_g000016
rosa_roxburghii Rroxscaffold_3G00244460 Rroxscaffold_3G00274390 Rroxscaffold_3G00274400 Rroxscaffold_3G00274410 Rroxscaffold_4G00291800 Rroxscaffold_4G00291810 Rroxscaffold_4G00292220 Rroxscaffold_4G00292230 Rroxscaffold_4G00292250 Rroxscaffold_4G00313630 Rroxscaffold_4G00313640 Rroxscaffold_4G00313650 Rroxscaffold_4G00313660 Rroxscaffold_4G00313670 Rroxscaffold_4G00313690 Rroxscaffold_5G00341170 Rroxscaffold_5G00341180 Rroxscaffold_5G00341200 Rroxscaffold_5G00341210 Rroxscaffold_5G00341340 Rroxscaffold_5G00341350 Rroxscaffold_5G00341360 Rroxscaffold_5G00341380 Rroxscaffold_5G00345120 Rroxscaffold_7G00182670 Rroxscaffold_7G00182680 Rroxscaffold_7G00182700 Rroxscaffold_7G00182710 Rroxscaffold_7G00182730 Rroxscaffold_7G00182770 Rroxscaffold_7G00182790 Rroxscaffold_7G00182800 Rroxscaffold_7G00212460
rosa_rugosa Rorug01G0139800.1 Rorug01G0140000.1 Rorug03G0349500 Rorug03G0349500 Rorug03G0349500 Rorug03G0349600 Rorug03G0349600 Rorug04G0023100 Rorug05G0538200 Rorug06G0176800 Rorug06G0177100 Rorug06G0420800 Rorug06G0420900 Rorug06G0421000 Rorug07G0307700
rosa_samantha Rh1AG086600 Rh1AG324800 Rh1DG318900 Rh4AG067600 Rh4AG068400 Rh4AG069200 Rh4BG096900 Rh4CG073400 Rh4CG073900 Rh4CG074500 Rh4DG063500 Rh4DG063700 Rh4DG063800 Rh4DG064000 Rh4DG093500 Rh6AG288300 Rh6AG288400 Rh6AG288500 Rh6AG288600 Rh6AG288700 Rh6AG288800 Rh6BG289900 Rh6BG290000 Rh6BG290100 Rh6BG290400 Rh6BG290800 Rh6BG290900 Rh6CG047000 Rh6CG290900 Rh6CG291000 Rh6CG291100 Rh6CG291300 Rh6CG291400 Rh6CG291500 Rh6CG291600 Rh6CG291700 Rh6CG291800 Rh6DG042500 Rh7AG020300 Rh7AG287600 Rh7BG020000 Rh7CG021200 Rh7CG021400 Rh7CG307400 Rh7DG020900
rosa_wichuraiana Rw0G006240 Rw0G019430 Rw1G013000 Rw1G013020 Rw1G013040 Rw1G013070 Rw1G013090 Rw1G028790 Rw1G028800 Rw1G028810 Rw4G005480 Rw4G005500 Rw4G005520 Rw4G005530 Rw4G005540 Rw4G005560 Rw4G005570 Rw6G004910 Rw6G024770 Rw6G024780 Rw6G024790 Rw6G024800 Rw6G024810 Rw6G024820 Rw6G024830 Rw6G024840 Rw6G024850 Rw6G024860 Rw6G024870 Rw6G024880 Rw6G024890 Rw7G001680 Rw7G001690 Rw7G001700 Rw7G038360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 157
AccB1I GGYRCC 1 cut(s) 157
AccI GTMKAC 1 cut(s) 197
AcoI YGGCCR 1 cut(s) 230
AcsI RAATTY 1 cut(s) 293
AcuI CTGAAG 1 cut(s) 92
AfaI GTAC 2 cut(s) 137, 159
AfiI CCNNNNNNNGG 1 cut(s) 279
AgeI ACCGGT 1 cut(s) 160
AgsI TTSAA 1 cut(s) 212
AluBI AGCT 1 cut(s) 16
AluI AGCT 1 cut(s) 16
Alw21I GWGCWC 1 cut(s) 168
AoxI GGCC 3 cut(s) 29, 230, 270
ApoI RAATTY 1 cut(s) 293
AsiGI ACCGGT 1 cut(s) 160
Asp718I GGTACC 1 cut(s) 157
AspS9I GGNCC 2 cut(s) 103, 270
AvaII GGWCC 1 cut(s) 103
BalI TGGCCA 1 cut(s) 232
BanI GGYRCC 1 cut(s) 157
BanII GRGCYC 1 cut(s) 64
BarI GAAGNNNNNNTAC 1 cut(s) 32
Bbv12I GWGCWC 1 cut(s) 168
BceAI ACGGC 1 cut(s) 291
BfaI CTAG 2 cut(s) 20, 33
Bme18I GGWCC 1 cut(s) 103
BmgT120I GGNCC 2 cut(s) 103, 270
BmiI GGNNCC 1 cut(s) 159
BmrI ACTGGG 1 cut(s) 137
BmuI ACTGGG 1 cut(s) 137
BsaJI CCNNGG 1 cut(s) 273
BsaWI WCCGGW 1 cut(s) 160
Bsc4I CCNNNNNNNGG 1 cut(s) 279
Bse118I RCCGGY 1 cut(s) 160
Bse1I ACTGG 1 cut(s) 143
BseDI CCNNGG 1 cut(s) 273
BseLI CCNNNNNNNGG 1 cut(s) 279
BseNI ACTGG 1 cut(s) 143
BseRI GAGGAG 1 cut(s) 236
BshFI GGCC 3 cut(s) 31, 232, 272
BshNI GGYRCC 1 cut(s) 157
BshTI ACCGGT 1 cut(s) 160
BsiHKAI GWGCWC 1 cut(s) 168
BsiSI CCGG 1 cut(s) 161
BslFI GGGAC 1 cut(s) 21
BslI CCNNNNNNNGG 1 cut(s) 279
BsmFI GGGAC 1 cut(s) 21
BsnI GGCC 3 cut(s) 31, 232, 272
Bsp1286I GDGCHC 2 cut(s) 64, 168
Bsp143I GATC 2 cut(s) 121, 186
BspANI GGCC 3 cut(s) 31, 232, 272
BspLI GGNNCC 1 cut(s) 159
BspT107I GGYRCC 1 cut(s) 157
BsrFI RCCGGY 1 cut(s) 160
BsrI ACTGG 1 cut(s) 143
BssAI RCCGGY 1 cut(s) 160
BssECI CCNNGG 1 cut(s) 273
BssMI GATC 2 cut(s) 121, 186
Bst4CI ACNGT 2 cut(s) 135, 202
Bst6I CTCTTC 1 cut(s) 93
BstDEI CTNAG 1 cut(s) 190
BstDSI CCRYGG 1 cut(s) 273
BstKTI GATC 2 cut(s) 124, 189
BstMBI GATC 2 cut(s) 121, 186
BsuRI GGCC 3 cut(s) 31, 232, 272
BtgI CCRYGG 1 cut(s) 273
Cfr10I RCCGGY 1 cut(s) 160
Cfr13I GGNCC 2 cut(s) 103, 270
Csp6I GTAC 2 cut(s) 136, 158
CspAI ACCGGT 1 cut(s) 160
CviAII CATG 2 cut(s) 27, 173
CviJI RGCY 6 cut(s) 16, 31, 62, 232, 272, 278
CviKI_1 RGCY 6 cut(s) 16, 31, 62, 232, 272, 278
CviQI GTAC 2 cut(s) 136, 158
DdeI CTNAG 1 cut(s) 190
DpnI GATC 2 cut(s) 123, 188
DpnII GATC 2 cut(s) 121, 186
EaeI YGGCCR 1 cut(s) 230
Eam1104I CTCTTC 1 cut(s) 93
EarI CTCTTC 1 cut(s) 93
Eco24I GRGCYC 1 cut(s) 64
Eco47I GGWCC 1 cut(s) 103
Eco57I CTGAAG 1 cut(s) 92
EcoO109I RGGNCCY 1 cut(s) 103
EcoT38I GRGCYC 1 cut(s) 64
FaeI CATG 2 cut(s) 30, 176
FaiI YATR 8 cut(s) 28, 56, 58, 87, 150, 174, 264, 318
FaqI GGGAC 1 cut(s) 21
FatI CATG 2 cut(s) 26, 172
FauNDI CATATG 1 cut(s) 56
FblI GTMKAC 1 cut(s) 197
FriOI GRGCYC 1 cut(s) 64
FspBI CTAG 2 cut(s) 20, 33
HaeIII GGCC 3 cut(s) 31, 232, 272
HapII CCGG 1 cut(s) 161
Hin1II CATG 2 cut(s) 30, 176
HincII GTYRAC 1 cut(s) 112
HindII GTYRAC 1 cut(s) 112
HinfI GANTC 2 cut(s) 194, 238
HpaII CCGG 1 cut(s) 161
Hpy166II GTNNAC 2 cut(s) 112, 198
Hpy188I TCNGA 2 cut(s) 66, 253
Hpy188III TCNNGA 1 cut(s) 209
Hpy8I GTNNAC 2 cut(s) 112, 198
HpyAV CCTTC 2 cut(s) 67, 148
HpyCH4III ACNGT 2 cut(s) 135, 202
HpyF3I CTNAG 1 cut(s) 190
Hsp92II CATG 2 cut(s) 30, 176
KpnI GGTACC 1 cut(s) 161
Kzo9I GATC 2 cut(s) 121, 186
LpnPI CCDG 3 cut(s) 34, 156, 174
MaeI CTAG 2 cut(s) 20, 33
MaeIII GTNAC 1 cut(s) 44
MalI GATC 2 cut(s) 123, 188
MboI GATC 2 cut(s) 121, 186
MboII GAAGA 3 cut(s) 17, 101, 110
MhlI GDGCHC 2 cut(s) 64, 168
MlsI TGGCCA 1 cut(s) 232
MluCI AATT 1 cut(s) 293
MluNI TGGCCA 1 cut(s) 232
MlyI GAGTC 1 cut(s) 203
MnlI CCTC 6 cut(s) 94, 116, 214, 217, 261, 295
Mox20I TGGCCA 1 cut(s) 232
MscI TGGCCA 1 cut(s) 232
MseI TTAA 1 cut(s) 327
Msp20I TGGCCA 1 cut(s) 232
MspI CCGG 1 cut(s) 161
NdeI CATATG 1 cut(s) 56
NdeII GATC 2 cut(s) 121, 186
NlaIII CATG 2 cut(s) 30, 176
NlaIV GGNNCC 1 cut(s) 159
PfeI GAWTC 1 cut(s) 238
PflFI GACNNNGTC 1 cut(s) 107
PinAI ACCGGT 1 cut(s) 160
PleI GAGTC 1 cut(s) 202
PpsI GAGTC 1 cut(s) 202
PpuMI RGGWCCY 1 cut(s) 103
Psp5II RGGWCCY 1 cut(s) 103
PspN4I GGNNCC 1 cut(s) 159
PspPI GGNCC 2 cut(s) 103, 270
PspPPI RGGWCCY 1 cut(s) 103
PsyI GACNNNGTC 1 cut(s) 107
RsaI GTAC 2 cut(s) 137, 159
RsaNI GTAC 2 cut(s) 136, 158
SaqAI TTAA 1 cut(s) 327
Sau3AI GATC 2 cut(s) 121, 186
Sau96I GGNCC 2 cut(s) 103, 270
SchI GAGTC 1 cut(s) 203
SduI GDGCHC 2 cut(s) 64, 168
SetI ASST 5 cut(s) 18, 108, 159, 228, 312
SinI GGWCC 1 cut(s) 103
Sse9I AATT 1 cut(s) 293
SspMI CTAG 2 cut(s) 20, 33
TaaI ACNGT 2 cut(s) 135, 202
TaqI TCGA 1 cut(s) 333
TasI AATT 1 cut(s) 293
TatI WGTACW 1 cut(s) 135
TfiI GAWTC 1 cut(s) 238
Tru1I TTAA 1 cut(s) 327
Tru9I TTAA 1 cut(s) 327
TspDTI ATGAA 3 cut(s) 102, 137, 161
Tth111I GACNNNGTC 1 cut(s) 107
VpaK11BI GGWCC 1 cut(s) 103
XapI RAATTY 1 cut(s) 293
XmiI GTMKAC 1 cut(s) 197
XspI CTAG 2 cut(s) 20, 33
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.