Rh6BG290000

Glutathione S-transferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000081
Physical Location & Seq
Forward (+)
51501884 .. 51502219
336 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG290000.1

Sequence Viewer

Length: 336 bp
ATGACCGACGGAGAAGAACTAGAGAAGGCAGCGAAAGAGGTGAAGGAGATACTTAAGATCTTGGAAGAGCAGGGTCTAGGAGAGAAGGAGTTCTTTGGTGGCAATGAGATTGGATTGGCCGACTTGGCCATGGGATTTATAGCCTCCAGTTTTGGAGTTATTGAAGAATTGGCTGGTGTCAAAGTACTGAATGGCGATGAGTTCCCTGGCTTGTGTAATTGGGTTAAGAAGTTTAAGGAGAACCCAGCAATCAAAAAGAACCTCCCTGACCCTGATCAAATGTATGTGTATTACAAGCAGAAGAGGGAGATGCTTATTGCTTCAAAGGCAGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418
Pfam Domains
Protein Families
GST_C GST_N

Protein Analysis

111

Amino Acids

12.34

Weight (kDa)

4.85

Isoelectric Point (pI)

34.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GST_C PF00043 5 - 82 1.3e-08 Glutathione S-transferase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000081)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G29420
fragaria_vesca FvH4_2g20010 FvH4_2g20020 FvH4_2g20030 FvH4_2g20060 FvH4_2g20070 FvH4_2g20080 FvH4_2g20091 FvH4_2g20110 FvH4_4g05320 FvH4_4g05350 FvH4_4g05360 FvH4_4g12720 FvH4_5g16920 FvH4_5g16920 FvH4_5g16920 FvH4_5g16920 FvH4_5g36020 FvH4_5g36870 FvH4_7g07360 FvH4_7g07390 FvH4_7g09460 FvH4_7g09460 FvH4_7g09460 FvH4_7g09460 FvH4_7g09460
malus_domestica MD00G1136300.v1.1 MD02G1236000.v1.1 MD02G1236100.v1.1 MD05G1184200.v1.1 MD05G1184300.v1.1 MD05G1184400.v1.1 MD05G1184600.v1.1 MD10G1172100.v1.1 MD10G1172200.v1.1 MD10G1172300.v1.1 MD13G1227600.v1.1 MD14G1232100.v1.1 MD14G1232200.v1.1 MD16G1011600.v1.1 MD16G1232800.v1.1 MD16G1232900.v1.1
prunus_persica Prupe.1G039900_v2.0.a1 Prupe.1G054800_v2.0.a1 Prupe.1G054900_v2.0.a1 Prupe.1G055000_v2.0.a1 Prupe.1G055300_v2.0.a1 Prupe.1G055900_v2.0.a1 Prupe.1G056000_v2.0.a1 Prupe.1G056100_v2.0.a1 Prupe.1G526000_v2.0.a1 Prupe.2G101400_v2.0.a1 Prupe.2G101500_v2.0.a1 Prupe.2G101600_v2.0.a1 Prupe.5G228000_v2.0.a1 Prupe.5G228100_v2.0.a1 Prupe.8G210200_v2.0.a1 Prupe.8G210300_v2.0.a1 Prupe.8G210400_v2.0.a1 Prupe.8G210500_v2.0.a1 Prupe.8G210600_v2.0.a1 Prupe.8G210700_v2.0.a1 Prupe.8G210800_v2.0.a1 Prupe.8G210800_v2.0.a1
pyrus_communis pycom02g20280 pycom02g20290 pycom02g20300 pycom05g16920 pycom05g16930 pycom05g16940 pycom07g06270 pycom10g14850 pycom10g14860 pycom10g14870 pycom14g19350 pycom16g19480
rosa_chinensis RchiOBHm_Chr1g0327741 RchiOBHm_Chr1g0339611 RchiOBHm_Chr1g0339631 RchiOBHm_Chr1g0339651 RchiOBHm_Chr1g0339671 RchiOBHm_Chr1g0339691 RchiOBHm_Chr1g0339761 RchiOBHm_Chr1g0339771 RchiOBHm_Chr1g0339781 RchiOBHm_Chr1g0364471 RchiOBHm_Chr1g0364481 RchiOBHm_Chr1g0364501 RchiOBHm_Chr1g0364511 RchiOBHm_Chr4g0396351 RchiOBHm_Chr4g0396391 RchiOBHm_Chr4g0396421 RchiOBHm_Chr4g0396431 RchiOBHm_Chr4g0396441 RchiOBHm_Chr4g0396461 RchiOBHm_Chr4g0396521 RchiOBHm_Chr4g0400161 RchiOBHm_Chr6g0285721 RchiOBHm_Chr6g0285731 RchiOBHm_Chr6g0285741 RchiOBHm_Chr6g0285761 RchiOBHm_Chr6g0285771 RchiOBHm_Chr6g0285781 RchiOBHm_Chr6g0285791 RchiOBHm_Chr6g0285801 RchiOBHm_Chr6g0285821 RchiOBHm_Chr6g0285831 RchiOBHm_Chr7g0179081 RchiOBHm_Chr7g0179091 RchiOBHm_Chr7g0179101 RchiOBHm_Chr7g0215201 RchiOBHm_Chr7g0237741
rosa_laevigata RLG00000000971 RLG00000002403 RLG00000005385 RLG00000005386 RLG00000005387 RLG00000009530 RLG00000009533 RLG00000009534 RLG00000009545 RLG00000009547 RLG00000009548 RLG00000012606 RLG00000012607 RLG00000012608 RLG00000012609 RLG00000012612 RLG00000012613 RLG00000012614 RLG00000015071 RLG00000020454 RLG00000020455 RLG00000027472 RLG00000027473 RLG00000027474 RLG00000027477 RLG00000029240 RLG00000029241
rosa_multiflora Rmu_co8321391.1_g000001 Rmu_co8330237.1_g000001 Rmu_sc0000037.1_g000019 Rmu_sc0000483.1_g000002 Rmu_sc0000511.1_g000018 Rmu_sc0000888.1_g000016 Rmu_sc0000888.1_g000017 Rmu_sc0001356.1_g000009 Rmu_sc0001356.1_g000010 Rmu_sc0001781.1_g000011 Rmu_sc0001781.1_g000020 Rmu_sc0001781.1_g000022 Rmu_sc0001781.1_g000023 Rmu_sc0001781.1_g000043 Rmu_sc0002862.1_g000013 Rmu_sc0003707.1_g000006 Rmu_sc0003707.1_g000007 Rmu_sc0003919.1_g000009 Rmu_sc0004321.1_g000006 Rmu_sc0005500.1_g000001 Rmu_sc0007814.1_g000001 Rmu_sc0007814.1_g000002 Rmu_sc0007814.1_g000010 Rmu_sc0009238.1_g000007 Rmu_sc0009409.1_g000003 Rmu_sc0011138.1_g000004 Rmu_sc0013252.1_g000003 Rmu_sc0017632.1_g000005 Rmu_sc0021325.1_g000002 Rmu_sc0021325.1_g000004 Rmu_sc0021325.1_g000005 Rmu_sc0021325.1_g000008 Rmu_sc0021325.1_g000009 Rmu_sc0028323.1_g000001 Rmu_sc0036111.1_g000001 Rmu_sc0041231.1_g000001 Rmu_ssc0000067.1_g000034 Rmu_ssc0000234.1_g000019 Rmu_ssc0000278.1_g000016
rosa_roxburghii Rroxscaffold_3G00244460 Rroxscaffold_3G00274390 Rroxscaffold_3G00274400 Rroxscaffold_3G00274410 Rroxscaffold_4G00291800 Rroxscaffold_4G00291810 Rroxscaffold_4G00292220 Rroxscaffold_4G00292230 Rroxscaffold_4G00292250 Rroxscaffold_4G00313630 Rroxscaffold_4G00313640 Rroxscaffold_4G00313650 Rroxscaffold_4G00313660 Rroxscaffold_4G00313670 Rroxscaffold_4G00313690 Rroxscaffold_5G00341170 Rroxscaffold_5G00341180 Rroxscaffold_5G00341200 Rroxscaffold_5G00341210 Rroxscaffold_5G00341340 Rroxscaffold_5G00341350 Rroxscaffold_5G00341360 Rroxscaffold_5G00341380 Rroxscaffold_5G00345120 Rroxscaffold_7G00182670 Rroxscaffold_7G00182680 Rroxscaffold_7G00182700 Rroxscaffold_7G00182710 Rroxscaffold_7G00182730 Rroxscaffold_7G00182770 Rroxscaffold_7G00182790 Rroxscaffold_7G00182800 Rroxscaffold_7G00212460
rosa_rugosa Rorug01G0139800.1 Rorug01G0140000.1 Rorug03G0349500 Rorug03G0349500 Rorug03G0349500 Rorug03G0349600 Rorug03G0349600 Rorug04G0023100 Rorug05G0538200 Rorug06G0176800 Rorug06G0177100 Rorug06G0420800 Rorug06G0420900 Rorug06G0421000 Rorug07G0307700
rosa_samantha Rh1AG086600 Rh1AG324800 Rh1DG318900 Rh4AG067600 Rh4AG068400 Rh4AG069200 Rh4BG096900 Rh4CG073400 Rh4CG073900 Rh4CG074500 Rh4DG063500 Rh4DG063700 Rh4DG063800 Rh4DG064000 Rh4DG093500 Rh6AG288300 Rh6AG288400 Rh6AG288500 Rh6AG288600 Rh6AG288700 Rh6AG288800 Rh6BG289900 Rh6BG290000 Rh6BG290100 Rh6BG290400 Rh6BG290800 Rh6BG290900 Rh6CG047000 Rh6CG290900 Rh6CG291000 Rh6CG291100 Rh6CG291300 Rh6CG291400 Rh6CG291500 Rh6CG291600 Rh6CG291700 Rh6CG291800 Rh6DG042500 Rh7AG020300 Rh7AG287600 Rh7BG020000 Rh7CG021200 Rh7CG021400 Rh7CG307400 Rh7DG020900
rosa_wichuraiana Rw0G006240 Rw0G019430 Rw1G013000 Rw1G013020 Rw1G013040 Rw1G013070 Rw1G013090 Rw1G028790 Rw1G028800 Rw1G028810 Rw4G005480 Rw4G005500 Rw4G005520 Rw4G005530 Rw4G005540 Rw4G005560 Rw4G005570 Rw6G004910 Rw6G024770 Rw6G024780 Rw6G024790 Rw6G024800 Rw6G024810 Rw6G024820 Rw6G024830 Rw6G024840 Rw6G024850 Rw6G024860 Rw6G024870 Rw6G024880 Rw6G024890 Rw7G001680 Rw7G001690 Rw7G001700 Rw7G038360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 2 cut(s) 117, 126
AfaI GTAC 1 cut(s) 186
AflII CTTAAG 1 cut(s) 53
AgsI TTSAA 2 cut(s) 164, 324
AjnI CCWGG 1 cut(s) 205
AoxI GGCC 2 cut(s) 117, 126
ApeKI GCWGC 2 cut(s) 29, 329
Asp700I GAANNNNTTC 1 cut(s) 89
AsuHPI GGTGA 1 cut(s) 52
BalI TGGCCA 1 cut(s) 128
BbvI GCAGC 1 cut(s) 41
BciT130I CCWGG 1 cut(s) 207
BclI TGATCA 1 cut(s) 274
BfaI CTAG 2 cut(s) 20, 77
BfrI CTTAAG 1 cut(s) 53
BglI GCCNNNNNGGC 1 cut(s) 125
BglII AGATCT 1 cut(s) 57
BisI GCNGC 2 cut(s) 30, 330
BlsI GCNGC 2 cut(s) 31, 331
BmcAI AGTACT 1 cut(s) 186
Bme1390I CCNGG 1 cut(s) 207
BmrFI CCNGG 1 cut(s) 207
BmsI GCATC 1 cut(s) 300
BpmI CTGGAG 1 cut(s) 130
BsaJI CCNNGG 2 cut(s) 129, 205
Bse1I ACTGG 1 cut(s) 147
Bse3DI GCAATG 1 cut(s) 109
BseBI CCWGG 1 cut(s) 207
BseDI CCNNGG 2 cut(s) 129, 205
BseMI GCAATG 1 cut(s) 109
BseNI ACTGG 1 cut(s) 147
BseXI GCAGC 1 cut(s) 41
BseYI CCCAGC 1 cut(s) 244
BshFI GGCC 2 cut(s) 119, 128
BsnI GGCC 2 cut(s) 119, 128
Bsp143I GATC 2 cut(s) 57, 274
Bsp19I CCATGG 1 cut(s) 129
BspANI GGCC 2 cut(s) 119, 128
BspQI GCTCTTC 1 cut(s) 60
BspTI CTTAAG 1 cut(s) 53
BsrDI GCAATG 1 cut(s) 109
BsrI ACTGG 1 cut(s) 147
BssECI CCNNGG 2 cut(s) 129, 205
BssMI GATC 2 cut(s) 57, 274
BssT1I CCWWGG 1 cut(s) 129
Bst2UI CCWGG 1 cut(s) 207
Bst6I CTCTTC 2 cut(s) 60, 296
BstAFI CTTAAG 1 cut(s) 53
BstDSI CCRYGG 1 cut(s) 129
BstKTI GATC 2 cut(s) 60, 277
BstMBI GATC 2 cut(s) 57, 274
BstMWI GCNNNNNNNGC 2 cut(s) 125, 326
BstNI CCWGG 1 cut(s) 207
BstSCI CCNGG 1 cut(s) 205
BstV1I GCAGC 1 cut(s) 41
BstX2I RGATCY 1 cut(s) 57
BstYI RGATCY 1 cut(s) 57
BsuRI GGCC 2 cut(s) 119, 128
BtgI CCRYGG 1 cut(s) 129
BtgZI GCGATG 1 cut(s) 210
Csp6I GTAC 1 cut(s) 185
CviAII CATG 2 cut(s) 130, 333
CviJI RGCY 5 cut(s) 119, 128, 143, 173, 210
CviKI_1 RGCY 5 cut(s) 119, 128, 143, 173, 210
CviQI GTAC 1 cut(s) 185
DpnI GATC 2 cut(s) 59, 276
DpnII GATC 2 cut(s) 57, 274
EaeI YGGCCR 2 cut(s) 117, 126
Eam1104I CTCTTC 2 cut(s) 60, 296
EarI CTCTTC 2 cut(s) 60, 296
Eco130I CCWWGG 1 cut(s) 129
EcoRII CCWGG 1 cut(s) 205
EcoT14I CCWWGG 1 cut(s) 129
ErhI CCWWGG 1 cut(s) 129
FaeI CATG 2 cut(s) 133, 336
FaiI YATR 4 cut(s) 131, 140, 285, 334
FalI AAGNNNNNCTT 2 cut(s) 77, 109
FatI CATG 2 cut(s) 129, 332
FbaI TGATCA 1 cut(s) 274
Fnu4HI GCNGC 2 cut(s) 30, 330
Fsp4HI GCNGC 2 cut(s) 30, 330
FspBI CTAG 2 cut(s) 20, 77
GluI GCNGC 2 cut(s) 30, 330
GsaI CCCAGC 1 cut(s) 248
GsuI CTGGAG 1 cut(s) 130
HaeIII GGCC 2 cut(s) 119, 128
Hin1II CATG 2 cut(s) 133, 336
HphI GGTGA 1 cut(s) 52
Hpy99I CGWCG 1 cut(s) 11
HpyAV CCTTC 3 cut(s) 19, 37, 79
HpyF10VI GCNNNNNNNGC 2 cut(s) 125, 326
Hsp92II CATG 2 cut(s) 133, 336
Ksp22I TGATCA 1 cut(s) 274
Kzo9I GATC 2 cut(s) 57, 274
LguI GCTCTTC 1 cut(s) 60
LpnPI CCDG 8 cut(s) 56, 159, 160, 192, 219, 258, 279, 285
Lsp1109I GCAGC 1 cut(s) 41
LweI GCATC 1 cut(s) 300
MaeI CTAG 2 cut(s) 20, 77
MalI GATC 2 cut(s) 59, 276
MboI GATC 2 cut(s) 57, 274
MboII GAAGA 4 cut(s) 26, 77, 176, 313
MflI RGATCY 1 cut(s) 57
MlsI TGGCCA 1 cut(s) 128
MluCI AATT 2 cut(s) 167, 217
MluNI TGGCCA 1 cut(s) 128
MnlI CCTC 4 cut(s) 31, 154, 272, 297
Mox20I TGGCCA 1 cut(s) 128
MroXI GAANNNNTTC 1 cut(s) 89
MscI TGGCCA 1 cut(s) 128
MseI TTAA 3 cut(s) 54, 225, 234
Msp20I TGGCCA 1 cut(s) 128
MspCI CTTAAG 1 cut(s) 53
MspR9I CCNGG 1 cut(s) 207
MvaI CCWGG 1 cut(s) 207
MwoI GCNNNNNNNGC 2 cut(s) 125, 326
NcoI CCATGG 1 cut(s) 129
NdeII GATC 2 cut(s) 57, 274
NlaIII CATG 2 cut(s) 133, 336
PciSI GCTCTTC 1 cut(s) 60
PdmI GAANNNNTTC 1 cut(s) 89
PkrI GCNGC 2 cut(s) 31, 331
Psp6I CCWGG 1 cut(s) 205
PspFI CCCAGC 1 cut(s) 244
PspGI CCWGG 1 cut(s) 205
PsuI RGATCY 1 cut(s) 57
RsaI GTAC 1 cut(s) 186
RsaNI GTAC 1 cut(s) 185
SapI GCTCTTC 1 cut(s) 60
SaqAI TTAA 3 cut(s) 54, 225, 234
SatI GCNGC 2 cut(s) 30, 330
Sau3AI GATC 2 cut(s) 57, 274
ScaI AGTACT 1 cut(s) 186
ScrFI CCNGG 1 cut(s) 207
SetI ASST 2 cut(s) 42, 264
SfaNI GCATC 1 cut(s) 300
SfiI GGCCNNNNNGGCC 1 cut(s) 125
SmlI CTYRAG 1 cut(s) 53
SmoI CTYRAG 1 cut(s) 53
Sse9I AATT 2 cut(s) 167, 217
SspMI CTAG 2 cut(s) 20, 77
StyD4I CCNGG 1 cut(s) 205
StyI CCWWGG 1 cut(s) 129
TaqII GACCGA 1 cut(s) 20
TasI AATT 2 cut(s) 167, 217
TatI WGTACW 1 cut(s) 184
Tru1I TTAA 3 cut(s) 54, 225, 234
Tru9I TTAA 3 cut(s) 54, 225, 234
TseI GCWGC 2 cut(s) 29, 329
TspGWI ACGGA 1 cut(s) 24
Vha464I CTTAAG 1 cut(s) 53
XmnI GAANNNNTTC 1 cut(s) 89
XspI CTAG 2 cut(s) 20, 77
ZrmI AGTACT 1 cut(s) 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.