PQQ enzyme repeat
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PQQ | PF01011 | 17 - 371 | 1.7e-20 | Glucose/ethanol/alcohol dehydrogenase, beta-propeller domain |
| PQQ_2 | PF13360 | 73 - 208 | 2.4e-11 | Outer membrane protein assembly factor BamB |
| PQQ_2 | PF13360 | 194 - 372 | 1.4e-06 | Outer membrane protein assembly factor BamB |
| Beta-prop_ACSF4 | PF13570 | 413 - 495 | 3.2e-07 | Beta-alanine-activating enzyme, beta-propeller |
| PQQ_2 | PF13360 | 419 - 496 | 1e-09 | Outer membrane protein assembly factor BamB |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 185 |
| AatII | GACGTC | 3 cut(s) | 254, 321, 429 |
| Acc36I | ACCTGC | 1 cut(s) | 185 |
| Acc65I | GGTACC | 1 cut(s) | 618 |
| AccB1I | GGYRCC | 2 cut(s) | 329, 618 |
| AccI | GTMKAC | 2 cut(s) | 1019, 1113 |
| AccII | CGCG | 1 cut(s) | 395 |
| AciI | CCGC | 3 cut(s) | 192, 395, 1086 |
| AclWI | GGATC | 6 cut(s) | 59, 877, 986, 999, 1083, 1096 |
| AcoI | YGGCCR | 1 cut(s) | 1260 |
| AcuI | CTGAAG | 1 cut(s) | 858 |
| AcyI | GRCGYC | 3 cut(s) | 251, 318, 426 |
| AfaI | GTAC | 6 cut(s) | 289, 467, 531, 620, 905, 1175 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 48, 339, 628, 711, 978, 1001 |
| AflIII | ACRYGT | 1 cut(s) | 462 |
| AgeI | ACCGGT | 2 cut(s) | 326, 1054 |
| AgsI | TTSAA | 1 cut(s) | 525 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 695 |
| AjnI | CCWGG | 2 cut(s) | 138, 847 |
| AluBI | AGCT | 7 cut(s) | 97, 160, 303, 587, 628, 884, 1241 |
| AluI | AGCT | 7 cut(s) | 97, 160, 303, 587, 628, 884, 1241 |
| AlwI | GGATC | 6 cut(s) | 59, 877, 986, 999, 1083, 1096 |
| AoxI | GGCC | 2 cut(s) | 118, 1260 |
| ApeKI | GCWGC | 3 cut(s) | 355, 881, 983 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 303, 335 |
| AsiGI | ACCGGT | 2 cut(s) | 326, 1054 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 304 |
| Asp718I | GGTACC | 1 cut(s) | 618 |
| AspLEI | GCGC | 1 cut(s) | 395 |
| AspS9I | GGNCC | 7 cut(s) | 119, 472, 689, 845, 1009, 1052, 1266 |
| AsuC2I | CCSGG | 4 cut(s) | 16, 457, 997, 1264 |
| AsuHPI | GGTGA | 1 cut(s) | 1148 |
| AvaII | GGWCC | 6 cut(s) | 472, 689, 845, 1009, 1052, 1266 |
| BaeGI | GKGCMC | 1 cut(s) | 683 |
| BamHI | GGATCC | 2 cut(s) | 991, 1088 |
| BanI | GGYRCC | 2 cut(s) | 329, 618 |
| BanII | GRGCYC | 1 cut(s) | 802 |
| BauI | CACGAG | 1 cut(s) | 161 |
| BbvI | GCAGC | 3 cut(s) | 342, 893, 970 |
| BccI | CCATC | 5 cut(s) | 424, 428, 587, 958, 972 |
| BceAI | ACGGC | 4 cut(s) | 110, 317, 1038, 1275 |
| BciT130I | CCWGG | 2 cut(s) | 140, 849 |
| BciVI | GTATCC | 1 cut(s) | 592 |
| BcnI | CCSGG | 4 cut(s) | 16, 457, 997, 1264 |
| BfaI | CTAG | 4 cut(s) | 179, 584, 653, 860 |
| BfmI | CTRYAG | 1 cut(s) | 885 |
| BfuAI | ACCTGC | 1 cut(s) | 185 |
| BfuI | GTATCC | 1 cut(s) | 592 |
| BisI | GCNGC | 5 cut(s) | 192, 356, 396, 882, 984 |
| BlsI | GCNGC | 5 cut(s) | 193, 357, 397, 883, 985 |
| Bme1390I | CCNGG | 6 cut(s) | 16, 140, 457, 849, 997, 1264 |
| Bme18I | GGWCC | 6 cut(s) | 472, 689, 845, 1009, 1052, 1266 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 695 |
| BmgT120I | GGNCC | 7 cut(s) | 119, 472, 689, 845, 1009, 1052, 1266 |
| BmiI | GGNNCC | 6 cut(s) | 331, 474, 620, 993, 1090, 1267 |
| BmrFI | CCNGG | 6 cut(s) | 16, 140, 457, 849, 997, 1264 |
| BmrI | ACTGGG | 1 cut(s) | 162 |
| BmsI | GCATC | 4 cut(s) | 535, 691, 717, 1087 |
| BmuI | ACTGGG | 1 cut(s) | 162 |
| BpuMI | CCSGG | 4 cut(s) | 16, 457, 997, 1264 |
| BsaAI | YACGTR | 1 cut(s) | 465 |
| BsaHI | GRCGYC | 3 cut(s) | 251, 318, 426 |
| BsaJI | CCNNGG | 3 cut(s) | 138, 295, 995 |
| BsaWI | WCCGGW | 4 cut(s) | 326, 971, 1054, 1160 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1155, 1185 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 48, 339, 628, 711, 978, 1001 |
| Bse118I | RCCGGY | 3 cut(s) | 80, 326, 1054 |
| Bse1I | ACTGG | 5 cut(s) | 34, 157, 505, 607, 1138 |
| Bse3DI | GCAATG | 5 cut(s) | 75, 993, 1042, 1125, 1201 |
| BseBI | CCWGG | 2 cut(s) | 140, 849 |
| BseDI | CCNNGG | 3 cut(s) | 138, 295, 995 |
| BseGI | GGATG | 3 cut(s) | 416, 579, 983 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 48, 339, 628, 711, 978, 1001 |
| BseMI | GCAATG | 5 cut(s) | 75, 993, 1042, 1125, 1201 |
| BseNI | ACTGG | 5 cut(s) | 34, 157, 505, 607, 1138 |
| BseRI | GAGGAG | 1 cut(s) | 879 |
| BseSI | GKGCMC | 1 cut(s) | 683 |
| BseX3I | CGGCCG | 1 cut(s) | 1260 |
| BseXI | GCAGC | 3 cut(s) | 342, 893, 970 |
| BseYI | CCCAGC | 2 cut(s) | 628, 1031 |
| Bsh1236I | CGCG | 1 cut(s) | 395 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1263 |
| BshFI | GGCC | 2 cut(s) | 120, 1262 |
| BshNI | GGYRCC | 2 cut(s) | 329, 618 |
| BshTI | ACCGGT | 2 cut(s) | 326, 1054 |
| BsiEI | CGRYCG | 1 cut(s) | 1263 |
| BslFI | GGGAC | 4 cut(s) | 196, 393, 458, 1279 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 48, 339, 628, 711, 978, 1001 |
| BsmFI | GGGAC | 4 cut(s) | 196, 393, 458, 1279 |
| BsnI | GGCC | 2 cut(s) | 120, 1262 |
| Bsp1286I | GDGCHC | 2 cut(s) | 683, 802 |
| Bsp1407I | TGTACA | 1 cut(s) | 903 |
| Bsp143I | GATC | 7 cut(s) | 51, 62, 146, 805, 869, 991, 1088 |
| BspACI | CCGC | 3 cut(s) | 192, 395, 1086 |
| BspANI | GGCC | 2 cut(s) | 120, 1262 |
| BspFNI | CGCG | 1 cut(s) | 395 |
| BspLI | GGNNCC | 6 cut(s) | 331, 474, 620, 993, 1090, 1267 |
| BspMI | ACCTGC | 1 cut(s) | 185 |
| BspPI | GGATC | 6 cut(s) | 59, 877, 986, 999, 1083, 1096 |
| BspT107I | GGYRCC | 2 cut(s) | 329, 618 |
| BsrDI | GCAATG | 5 cut(s) | 75, 993, 1042, 1125, 1201 |
| BsrFI | RCCGGY | 3 cut(s) | 80, 326, 1054 |
| BsrGI | TGTACA | 1 cut(s) | 903 |
| BsrI | ACTGG | 5 cut(s) | 34, 157, 505, 607, 1138 |
| BssAI | RCCGGY | 3 cut(s) | 80, 326, 1054 |
| BssECI | CCNNGG | 3 cut(s) | 138, 295, 995 |
| BssMI | GATC | 7 cut(s) | 51, 62, 146, 805, 869, 991, 1088 |
| BssNAI | GTATAC | 1 cut(s) | 1114 |
| BssNI | GRCGYC | 3 cut(s) | 251, 318, 426 |
| BssSI | CACGAG | 1 cut(s) | 161 |
| Bst1107I | GTATAC | 1 cut(s) | 1114 |
| Bst2BI | CACGAG | 1 cut(s) | 161 |
| Bst2UI | CCWGG | 2 cut(s) | 140, 849 |
| Bst4CI | ACNGT | 5 cut(s) | 384, 623, 1111, 1171, 1178 |
| BstACI | GRCGYC | 3 cut(s) | 251, 318, 426 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1046, 1200 |
| BstAUI | TGTACA | 1 cut(s) | 903 |
| BstBAI | YACGTR | 1 cut(s) | 465 |
| BstC8I | GCNNGC | 1 cut(s) | 82 |
| BstDEI | CTNAG | 1 cut(s) | 731 |
| BstDSI | CCRYGG | 1 cut(s) | 295 |
| BstF5I | GGATG | 3 cut(s) | 416, 579, 983 |
| BstFNI | CGCG | 1 cut(s) | 395 |
| BstHHI | GCGC | 1 cut(s) | 395 |
| BstKTI | GATC | 7 cut(s) | 54, 65, 149, 808, 872, 994, 1091 |
| BstMBI | GATC | 7 cut(s) | 51, 62, 146, 805, 869, 991, 1088 |
| BstMCI | CGRYCG | 1 cut(s) | 1263 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 197, 1046, 1200 |
| BstNI | CCWGG | 2 cut(s) | 140, 849 |
| BstNSI | RCATGY | 3 cut(s) | 355, 443, 1186 |
| BstSCI | CCNGG | 6 cut(s) | 14, 138, 455, 847, 995, 1262 |
| BstSFI | CTRYAG | 1 cut(s) | 885 |
| BstSLI | GKGCMC | 1 cut(s) | 683 |
| BstUI | CGCG | 1 cut(s) | 395 |
| BstV1I | GCAGC | 3 cut(s) | 342, 893, 970 |
| BstX2I | RGATCY | 2 cut(s) | 991, 1088 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 785 |
| BstYI | RGATCY | 2 cut(s) | 991, 1088 |
| BstZ17I | GTATAC | 1 cut(s) | 1114 |
| BstZI | CGGCCG | 1 cut(s) | 1260 |
| BsuI | GTATCC | 1 cut(s) | 592 |
| BsuRI | GGCC | 2 cut(s) | 120, 1262 |
| BtgI | CCRYGG | 1 cut(s) | 295 |
| BtsCI | GGATG | 3 cut(s) | 416, 579, 983 |
| BtsI | GCAGTG | 1 cut(s) | 1222 |
| BtsIMutI | CAGTG | 1 cut(s) | 1222 |
| BveI | ACCTGC | 1 cut(s) | 185 |
| Cac8I | GCNNGC | 1 cut(s) | 82 |
| CfoI | GCGC | 1 cut(s) | 395 |
| Cfr10I | RCCGGY | 3 cut(s) | 80, 326, 1054 |
| Cfr13I | GGNCC | 7 cut(s) | 119, 472, 689, 845, 1009, 1052, 1266 |
| CpoI | CGGWCCG | 1 cut(s) | 1052 |
| CseI | GACGC | 1 cut(s) | 1051 |
| Csp6I | GTAC | 6 cut(s) | 288, 466, 530, 619, 904, 1174 |
| CspAI | ACCGGT | 2 cut(s) | 326, 1054 |
| CspI | CGGWCCG | 1 cut(s) | 1052 |
| CviAII | CATG | 7 cut(s) | 208, 352, 440, 569, 873, 1183, 1293 |
| CviQI | GTAC | 6 cut(s) | 288, 466, 530, 619, 904, 1174 |
| DdeI | CTNAG | 1 cut(s) | 731 |
| DpnI | GATC | 7 cut(s) | 53, 64, 148, 807, 871, 993, 1090 |
| DpnII | GATC | 7 cut(s) | 51, 62, 146, 805, 869, 991, 1088 |
| DriI | GACNNNNNGTC | 1 cut(s) | 695 |
| EaeI | YGGCCR | 1 cut(s) | 1260 |
| EagI | CGGCCG | 1 cut(s) | 1260 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 695 |
| EciI | GGCGGA | 1 cut(s) | 1101 |
| EclXI | CGGCCG | 1 cut(s) | 1260 |
| Eco24I | GRGCYC | 1 cut(s) | 802 |
| Eco47I | GGWCC | 6 cut(s) | 472, 689, 845, 1009, 1052, 1266 |
| Eco52I | CGGCCG | 1 cut(s) | 1260 |
| Eco57I | CTGAAG | 1 cut(s) | 858 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1009, 1266 |
| EcoRII | CCWGG | 2 cut(s) | 138, 847 |
| EcoT22I | ATGCAT | 1 cut(s) | 1042 |
| EcoT38I | GRGCYC | 1 cut(s) | 802 |
| FaeI | CATG | 7 cut(s) | 211, 355, 443, 572, 876, 1186, 1296 |
| FaqI | GGGAC | 4 cut(s) | 196, 393, 458, 1279 |
| FatI | CATG | 7 cut(s) | 207, 351, 439, 568, 872, 1182, 1292 |
| FblI | GTMKAC | 2 cut(s) | 1019, 1113 |
| Fnu4HI | GCNGC | 5 cut(s) | 192, 356, 396, 882, 984 |
| FokI | GGATG | 3 cut(s) | 403, 566, 990 |
| FriOI | GRGCYC | 1 cut(s) | 802 |
| Fsp4HI | GCNGC | 5 cut(s) | 192, 356, 396, 882, 984 |
| FspBI | CTAG | 4 cut(s) | 179, 584, 653, 860 |
| GlaI | GCGC | 1 cut(s) | 394 |
| GluI | GCNGC | 5 cut(s) | 192, 356, 396, 882, 984 |
| GsaI | CCCAGC | 2 cut(s) | 632, 1035 |
| HaeIII | GGCC | 2 cut(s) | 120, 1262 |
| HgaI | GACGC | 1 cut(s) | 1051 |
| HhaI | GCGC | 1 cut(s) | 395 |
| Hin1I | GRCGYC | 3 cut(s) | 251, 318, 426 |
| Hin1II | CATG | 7 cut(s) | 211, 355, 443, 572, 876, 1186, 1296 |
| Hin6I | GCGC | 1 cut(s) | 393 |
| HinP1I | GCGC | 1 cut(s) | 393 |
| HincII | GTYRAC | 2 cut(s) | 834, 1020 |
| HindII | GTYRAC | 2 cut(s) | 834, 1020 |
| HindIII | AAGCTT | 1 cut(s) | 301 |
| HinfI | GANTC | 2 cut(s) | 856, 1074 |
| HphI | GGTGA | 1 cut(s) | 1148 |
| Hpy166II | GTNNAC | 7 cut(s) | 834, 904, 906, 1020, 1114, 1174, 1257 |
| Hpy188I | TCNGA | 2 cut(s) | 544, 810 |
| Hpy188III | TCNNGA | 5 cut(s) | 60, 590, 653, 778, 803 |
| Hpy8I | GTNNAC | 7 cut(s) | 834, 904, 906, 1020, 1114, 1174, 1257 |
| Hpy99I | CGWCG | 6 cut(s) | 253, 256, 428, 701, 1024, 1067 |
| HpyAV | CCTTC | 3 cut(s) | 257, 429, 1291 |
| HpyCH4III | ACNGT | 5 cut(s) | 384, 623, 1111, 1171, 1178 |
| HpyCH4IV | ACGT | 7 cut(s) | 251, 318, 426, 464, 696, 960, 1209 |
| HpyCH4V | TGCA | 4 cut(s) | 986, 1040, 1100, 1203 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 197, 1046, 1200 |
| HpyF3I | CTNAG | 1 cut(s) | 731 |
| HpySE526I | ACGT | 7 cut(s) | 251, 318, 426, 464, 696, 960, 1209 |
| Hsp92I | GRCGYC | 3 cut(s) | 251, 318, 426 |
| Hsp92II | CATG | 7 cut(s) | 211, 355, 443, 572, 876, 1186, 1296 |
| HspAI | GCGC | 1 cut(s) | 393 |
| KpnI | GGTACC | 1 cut(s) | 622 |
| KroI | GCCGGC | 1 cut(s) | 80 |
| KroNI | GCCGGC | 1 cut(s) | 82 |
| Kzo9I | GATC | 7 cut(s) | 51, 62, 146, 805, 869, 991, 1088 |
| LmnI | GCTCC | 4 cut(s) | 231, 878, 1163, 1238 |
| Lsp1109I | GCAGC | 3 cut(s) | 342, 893, 970 |
| LweI | GCATC | 4 cut(s) | 535, 691, 717, 1087 |
| MaeI | CTAG | 4 cut(s) | 179, 584, 653, 860 |
| MaeII | ACGT | 7 cut(s) | 251, 318, 426, 464, 696, 960, 1209 |
| MaeIII | GTNAC | 2 cut(s) | 961, 1288 |
| MalI | GATC | 7 cut(s) | 53, 64, 148, 807, 871, 993, 1090 |
| MboI | GATC | 7 cut(s) | 51, 62, 146, 805, 869, 991, 1088 |
| MboII | GAAGA | 1 cut(s) | 272 |
| MflI | RGATCY | 2 cut(s) | 991, 1088 |
| MhlI | GDGCHC | 2 cut(s) | 683, 802 |
| MluCI | AATT | 4 cut(s) | 22, 46, 311, 520 |
| MlyI | GAGTC | 1 cut(s) | 1083 |
| MmeI | TCCRAC | 2 cut(s) | 88, 95 |
| MnlI | CCTC | 5 cut(s) | 857, 860, 920, 1000, 1279 |
| Mph1103I | ATGCAT | 1 cut(s) | 1042 |
| MroNI | GCCGGC | 1 cut(s) | 80 |
| MroXI | GAANNNNTTC | 1 cut(s) | 304 |
| MseI | TTAA | 5 cut(s) | 11, 21, 509, 564, 666 |
| MslI | CAYNNNNRTG | 1 cut(s) | 543 |
| MspA1I | CMGCKG | 1 cut(s) | 628 |
| MspR9I | CCNGG | 6 cut(s) | 16, 140, 457, 849, 997, 1264 |
| MvaI | CCWGG | 2 cut(s) | 140, 849 |
| MvnI | CGCG | 1 cut(s) | 395 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 197, 1046, 1200 |
| NaeI | GCCGGC | 1 cut(s) | 82 |
| NciI | CCSGG | 4 cut(s) | 16, 457, 997, 1264 |
| NdeII | GATC | 7 cut(s) | 51, 62, 146, 805, 869, 991, 1088 |
| NgoMIV | GCCGGC | 1 cut(s) | 80 |
| NlaIII | CATG | 7 cut(s) | 211, 355, 443, 572, 876, 1186, 1296 |
| NlaIV | GGNNCC | 6 cut(s) | 331, 474, 620, 993, 1090, 1267 |
| NmuCI | GTSAC | 2 cut(s) | 961, 1288 |
| NsiI | ATGCAT | 1 cut(s) | 1042 |
| NspI | RCATGY | 3 cut(s) | 355, 443, 1186 |
| PaqCI | CACCTGC | 1 cut(s) | 185 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 702 |
| PdiI | GCCGGC | 1 cut(s) | 82 |
| PdmI | GAANNNNTTC | 1 cut(s) | 304 |
| PfeI | GAWTC | 1 cut(s) | 856 |
| PinAI | ACCGGT | 2 cut(s) | 326, 1054 |
| PkrI | GCNGC | 5 cut(s) | 193, 357, 397, 883, 985 |
| PleI | GAGTC | 1 cut(s) | 1082 |
| PpsI | GAGTC | 1 cut(s) | 1082 |
| Ppu21I | YACGTR | 1 cut(s) | 465 |
| PpuMI | RGGWCCY | 2 cut(s) | 1009, 1266 |
| Psp5II | RGGWCCY | 2 cut(s) | 1009, 1266 |
| Psp6I | CCWGG | 2 cut(s) | 138, 847 |
| PspFI | CCCAGC | 2 cut(s) | 628, 1031 |
| PspGI | CCWGG | 2 cut(s) | 138, 847 |
| PspN4I | GGNNCC | 6 cut(s) | 331, 474, 620, 993, 1090, 1267 |
| PspPI | GGNCC | 7 cut(s) | 119, 472, 689, 845, 1009, 1052, 1266 |
| PspPPI | RGGWCCY | 2 cut(s) | 1009, 1266 |
| PsuI | RGATCY | 2 cut(s) | 991, 1088 |
| PvuII | CAGCTG | 1 cut(s) | 628 |
| RsaI | GTAC | 6 cut(s) | 289, 467, 531, 620, 905, 1175 |
| RsaNI | GTAC | 6 cut(s) | 288, 466, 530, 619, 904, 1174 |
| RseI | CAYNNNNRTG | 1 cut(s) | 543 |
| Rsr2I | CGGWCCG | 1 cut(s) | 1052 |
| RsrII | CGGWCCG | 1 cut(s) | 1052 |
| SalI | GTCGAC | 1 cut(s) | 1018 |
| SaqAI | TTAA | 5 cut(s) | 11, 21, 509, 564, 666 |
| SatI | GCNGC | 5 cut(s) | 192, 356, 396, 882, 984 |
| Sau3AI | GATC | 7 cut(s) | 51, 62, 146, 805, 869, 991, 1088 |
| Sau96I | GGNCC | 7 cut(s) | 119, 472, 689, 845, 1009, 1052, 1266 |
| SchI | GAGTC | 1 cut(s) | 1083 |
| ScrFI | CCNGG | 6 cut(s) | 16, 140, 457, 849, 997, 1264 |
| SduI | GDGCHC | 2 cut(s) | 683, 802 |
| SfaNI | GCATC | 4 cut(s) | 535, 691, 717, 1087 |
| SfcI | CTRYAG | 1 cut(s) | 885 |
| SinI | GGWCC | 6 cut(s) | 472, 689, 845, 1009, 1052, 1266 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 543 |
| Sse9I | AATT | 4 cut(s) | 22, 46, 311, 520 |
| SsiI | CCGC | 3 cut(s) | 192, 395, 1086 |
| SspI | AATATT | 1 cut(s) | 9 |
| SspMI | CTAG | 4 cut(s) | 179, 584, 653, 860 |
| StyD4I | CCNGG | 6 cut(s) | 14, 138, 455, 847, 995, 1262 |
| TaaI | ACNGT | 5 cut(s) | 384, 623, 1111, 1171, 1178 |
| TaiI | ACGT | 7 cut(s) | 254, 321, 429, 467, 699, 963, 1212 |
| TaqI | TCGA | 4 cut(s) | 423, 699, 1019, 1187 |
| TaqII | GACCGA | 3 cut(s) | 160, 460, 706 |
| TasI | AATT | 4 cut(s) | 22, 46, 311, 520 |
| TatI | WGTACW | 2 cut(s) | 287, 903 |
| TauI | GCSGC | 2 cut(s) | 194, 398 |
| TfiI | GAWTC | 1 cut(s) | 856 |
| Tru1I | TTAA | 5 cut(s) | 11, 21, 509, 564, 666 |
| Tru9I | TTAA | 5 cut(s) | 11, 21, 509, 564, 666 |
| TscAI | CASTG | 1 cut(s) | 1222 |
| TseFI | GTSAC | 2 cut(s) | 961, 1288 |
| TseI | GCWGC | 3 cut(s) | 355, 881, 983 |
| Tsp45I | GTSAC | 2 cut(s) | 961, 1288 |
| TspDTI | ATGAA | 4 cut(s) | 294, 762, 1136, 1170 |
| TspGWI | ACGGA | 3 cut(s) | 284, 384, 939 |
| TspRI | CASTG | 1 cut(s) | 1222 |
| VpaK11BI | GGWCC | 6 cut(s) | 472, 689, 845, 1009, 1052, 1266 |
| XbaI | TCTAGA | 1 cut(s) | 652 |
| XceI | RCATGY | 3 cut(s) | 355, 443, 1186 |
| XmiI | GTMKAC | 2 cut(s) | 1019, 1113 |
| XmnI | GAANNNNTTC | 1 cut(s) | 304 |
| XspI | CTAG | 4 cut(s) | 179, 584, 653, 860 |
| ZraI | GACGTC | 3 cut(s) | 252, 319, 427 |
| Zsp2I | ATGCAT | 1 cut(s) | 1042 |