Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001008

Physical Location & Seq

Genomic Coordinates Forward (+)

78570142 .. 78580034

Gene Structure 9893 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021819

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGTTGCCGGACAATCATGGAAACTTGGGACATTATTCCGGAGCGGCAATATGGGGAAGTAGTCCATCAATTGATGCTCTCGGGAAACATGTCTATATTGCCACTGGGAACACGTATTCGGTCCCCGAAAATGTGAGTCAGTGTCAAGAAAATCAGAACAGTTCAACGATACCTACTCATCCAGATGCCTGTGTCGAGCCTGACAACCATGAAAATCGGGTTGCATGGGCTCTAGATCGGAATAATGGCCGTCTTGTGTGGTCTACGCTTATGAATAACTTGTGGTCCTATGTCACCGGAGCAACCGTGTATGGTGGCATGTCCATAGGCAATGGCTGCGTTTACATTGGCAATGGATATAGATTCCCCTATACTGCTGGAACCTCGCTGTTCGCCTTCTGTGTCGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PQQ PQQ_2 PQQ_3

Protein Analysis

137

Amino Acids

14.68

Weight (kDa)

5.57

Isoelectric Point (pI)

16.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001008)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g31710 FvH4_4g31710 FvH4_6g49090 FvH4_6g49090 FvH4_6g49090 FvH4_6g49090 FvH4_6g49090 FvH4_6g49110 FvH4_6g49111
malus_domestica	MD09G1048500.v1.1 MD09G1048700.v1.1 MD13G1077000.v1.1 MD17G1048600.v1.1
prunus_persica	Prupe.1G270000_v2.0.a1 Prupe.3G270300_v2.0.a1 Prupe.3G270400_v2.0.a1 Prupe.3G270500_v2.0.a1 Prupe.3G270600_v2.0.a1
pyrus_communis	pycom13g06710 pycom17g04320 pycom17g04340
rosa_chinensis	RchiOBHm_Chr2g0168951 RchiOBHm_Chr2g0168981 RchiOBHm_Chr2g0168991 RchiOBHm_Chr4g0440311
rosa_laevigata	RLG00000006193 RLG00000021816 RLG00000021819 RLG00000021820 RLG00000021821
rosa_multiflora	Rmu_co8508477.1_g000001 Rmu_co8508477.1_g000002 Rmu_co8508477.1_g000003 Rmu_sc0001685.1_g000040 Rmu_ssc0000393.1_g000016 Rmu_ssc0000393.1_g000019 Rmu_ssc0000393.1_g000020
rosa_roxburghii	Rroxscaffold_2G00082560 Rroxscaffold_2G00082570 Rroxscaffold_5G00381190
rosa_rugosa	Rorug02G0536200 Rorug02G0536300.1 Rorug02G0536400 Rorug02G0536400 Rorug04G0325500
rosa_samantha	Rh2AG607300 Rh2AG607500 Rh2BG620000 Rh2CG588600 Rh2CG588700 Rh2CG588900 Rh2CG589000 Rh2DG630700 Rh2DG630800 Rh4AG376400 Rh4BG389400 Rh4CG404200 Rh4DG383100
rosa_wichuraiana	Rw2G050350 Rw2G050360 Rw2G050370 Rw4G032220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	44
AccI	GTMKAC	1 cut(s)	263
AccIII	TCCGGA	1 cut(s)	38
AciI	CCGC	1 cut(s)	44
AcoI	YGGCCR	1 cut(s)	247
AflIII	ACRYGT	2 cut(s)	88, 111
AgsI	TTSAA	1 cut(s)	165
Ama87I	CYCGRG	1 cut(s)	80
Aor13HI	TCCGGA	1 cut(s)	38
AoxI	GGCC	1 cut(s)	247
ApeKI	GCWGC	1 cut(s)	336
AspS9I	GGNCC	2 cut(s)	121, 285
AsuHPI	GGTGA	1 cut(s)	286
AvaI	CYCGRG	1 cut(s)	80
AvaII	GGWCC	2 cut(s)	121, 285
BanII	GRGCYC	1 cut(s)	232
BbvI	GCAGC	1 cut(s)	323
BccI	CCATC	1 cut(s)	73
BceAI	ACGGC	1 cut(s)	234
BfaI	CTAG	1 cut(s)	233
BisI	GCNGC	2 cut(s)	45, 337
BlsI	GCNGC	2 cut(s)	46, 338
Bme18I	GGWCC	2 cut(s)	121, 285
BmeT110I	CYCGRG	1 cut(s)	80
BmgT120I	GGNCC	2 cut(s)	121, 285
BmiI	GGNNCC	2 cut(s)	123, 382
BmrI	ACTGGG	1 cut(s)	114
BmsI	GCATC	2 cut(s)	64, 175
BmuI	ACTGGG	1 cut(s)	114
BsaAI	YACGTR	1 cut(s)	114
BsaWI	WCCGGW	2 cut(s)	38, 296
BsaXI	ACNNNNNCTCC	2 cut(s)	291, 321
Bse1I	ACTGG	1 cut(s)	109
Bse3DI	GCAATG	2 cut(s)	337, 358
BseAI	TCCGGA	1 cut(s)	38
BseGI	GGATG	1 cut(s)	178
BseMI	GCAATG	2 cut(s)	337, 358
BseNI	ACTGG	1 cut(s)	109
BseXI	GCAGC	1 cut(s)	323
BshFI	GGCC	1 cut(s)	249
BsiHKCI	CYCGRG	1 cut(s)	80
BsiSI	CCGG	3 cut(s)	8, 39, 297
BslFI	GGGAC	2 cut(s)	42, 107
BsmFI	GGGAC	2 cut(s)	42, 107
BsnI	GGCC	1 cut(s)	249
BsoBI	CYCGRG	1 cut(s)	80
Bsp1286I	GDGCHC	1 cut(s)	232
Bsp13I	TCCGGA	1 cut(s)	38
Bsp143I	GATC	1 cut(s)	235
BspACI	CCGC	1 cut(s)	44
BspANI	GGCC	1 cut(s)	249
BspEI	TCCGGA	1 cut(s)	38
BspLI	GGNNCC	2 cut(s)	123, 382
BsrBI	CCGCTC	1 cut(s)	44
BsrDI	GCAATG	2 cut(s)	337, 358
BsrI	ACTGG	1 cut(s)	109
BssMI	GATC	1 cut(s)	235
Bst4CI	ACNGT	2 cut(s)	161, 307
BstAPI	GCANNNNNTGC	1 cut(s)	336
BstBAI	YACGTR	1 cut(s)	114
BstF5I	GGATG	1 cut(s)	178
BstKTI	GATC	1 cut(s)	238
BstMBI	GATC	1 cut(s)	235
BstMWI	GCNNNNNNNGC	1 cut(s)	336
BstNSI	RCATGY	2 cut(s)	92, 322
BstV1I	GCAGC	1 cut(s)	323
BsuRI	GGCC	1 cut(s)	249
BtsCI	GGATG	1 cut(s)	178
BtsIMutI	CAGTG	2 cut(s)	102, 146
Cfr13I	GGNCC	2 cut(s)	121, 285
CviAII	CATG	6 cut(s)	17, 89, 209, 225, 319, 408
CviJI	RGCY	4 cut(s)	199, 230, 249, 336
CviKI_1	RGCY	4 cut(s)	199, 230, 249, 336
DpnI	GATC	1 cut(s)	237
DpnII	GATC	1 cut(s)	235
EaeI	YGGCCR	1 cut(s)	247
Eco24I	GRGCYC	1 cut(s)	232
Eco47I	GGWCC	2 cut(s)	121, 285
Eco88I	CYCGRG	1 cut(s)	80
EcoT38I	GRGCYC	1 cut(s)	232
FaeI	CATG	6 cut(s)	20, 92, 212, 228, 322, 411
FaqI	GGGAC	2 cut(s)	42, 107
FatI	CATG	6 cut(s)	16, 88, 208, 224, 318, 407
FblI	GTMKAC	1 cut(s)	263
Fnu4HI	GCNGC	2 cut(s)	45, 337
FokI	GGATG	1 cut(s)	165
FriOI	GRGCYC	1 cut(s)	232
Fsp4HI	GCNGC	2 cut(s)	45, 337
FspBI	CTAG	1 cut(s)	233
GluI	GCNGC	2 cut(s)	45, 337
HaeIII	GGCC	1 cut(s)	249
HapII	CCGG	3 cut(s)	8, 39, 297
Hin1II	CATG	6 cut(s)	20, 92, 212, 228, 322, 411
HinfI	GANTC	2 cut(s)	136, 363
HpaII	CCGG	3 cut(s)	8, 39, 297
HphI	GGTGA	1 cut(s)	286
Hpy166II	GTNNAC	2 cut(s)	264, 343
Hpy188I	TCNGA	2 cut(s)	156, 240
Hpy188III	TCNNGA	5 cut(s)	39, 82, 146, 182, 233
Hpy8I	GTNNAC	2 cut(s)	264, 343
HpyAV	CCTTC	1 cut(s)	406
HpyCH4III	ACNGT	2 cut(s)	161, 307
HpyCH4IV	ACGT	1 cut(s)	113
HpyCH4V	TGCA	1 cut(s)	224
HpyF10VI	GCNNNNNNNGC	1 cut(s)	336
HpySE526I	ACGT	1 cut(s)	113
Hsp92II	CATG	6 cut(s)	20, 92, 212, 228, 322, 411
Kpn2I	TCCGGA	1 cut(s)	38
Kzo9I	GATC	1 cut(s)	235
LmnI	GCTCC	2 cut(s)	41, 299
LpnPI	CCDG	8 cut(s)	21, 52, 90, 195, 202, 213, 310, 363
Lsp1109I	GCAGC	1 cut(s)	323
LweI	GCATC	2 cut(s)	64, 175
MaeI	CTAG	1 cut(s)	233
MaeII	ACGT	1 cut(s)	113
MaeIII	GTNAC	1 cut(s)	292
MalI	GATC	1 cut(s)	237
MbiI	CCGCTC	1 cut(s)	44
MboI	GATC	1 cut(s)	235
MfeI	CAATTG	1 cut(s)	69
MhlI	GDGCHC	1 cut(s)	232
MluCI	AATT	1 cut(s)	69
MlyI	GAGTC	1 cut(s)	145
MnlI	CCTC	1 cut(s)	394
MroI	TCCGGA	1 cut(s)	38
MslI	CAYNNNNRTG	1 cut(s)	183
MspI	CCGG	3 cut(s)	8, 39, 297
MunI	CAATTG	1 cut(s)	69
MwoI	GCNNNNNNNGC	1 cut(s)	336
NdeII	GATC	1 cut(s)	235
NlaIII	CATG	6 cut(s)	20, 92, 212, 228, 322, 411
NlaIV	GGNNCC	2 cut(s)	123, 382
NmuCI	GTSAC	1 cut(s)	292
NspI	RCATGY	2 cut(s)	92, 322
PciI	ACATGT	1 cut(s)	88
PfeI	GAWTC	1 cut(s)	363
PkrI	GCNGC	2 cut(s)	46, 338
PleI	GAGTC	1 cut(s)	144
PpsI	GAGTC	1 cut(s)	144
Ppu21I	YACGTR	1 cut(s)	114
PscI	ACATGT	1 cut(s)	88
PspN4I	GGNNCC	2 cut(s)	123, 382
PspPI	GGNCC	2 cut(s)	121, 285
RseI	CAYNNNNRTG	1 cut(s)	183
SatI	GCNGC	2 cut(s)	45, 337
Sau3AI	GATC	1 cut(s)	235
Sau96I	GGNCC	2 cut(s)	121, 285
SchI	GAGTC	1 cut(s)	145
SduI	GDGCHC	1 cut(s)	232
SetI	ASST	3 cut(s)	116, 175, 386
SfaNI	GCATC	2 cut(s)	64, 175
SinI	GGWCC	2 cut(s)	121, 285
SmiMI	CAYNNNNRTG	1 cut(s)	183
Sse9I	AATT	1 cut(s)	69
SsiI	CCGC	1 cut(s)	44
SspMI	CTAG	1 cut(s)	233
TaaI	ACNGT	2 cut(s)	161, 307
TaiI	ACGT	1 cut(s)	116
TaqI	TCGA	1 cut(s)	195
TaqII	GACCGA	1 cut(s)	109
TasI	AATT	1 cut(s)	69
TauI	GCSGC	1 cut(s)	47
TfiI	GAWTC	1 cut(s)	363
TscAI	CASTG	2 cut(s)	109, 146
TseFI	GTSAC	1 cut(s)	292
TseI	GCWGC	1 cut(s)	336
Tsp45I	GTSAC	1 cut(s)	292
TspDTI	ATGAA	2 cut(s)	225, 287
TspRI	CASTG	2 cut(s)	109, 146
VpaK11BI	GGWCC	2 cut(s)	121, 285
XbaI	TCTAGA	1 cut(s)	232
XceI	RCATGY	2 cut(s)	92, 322
XmiI	GTMKAC	1 cut(s)	263
XspI	CTAG	1 cut(s)	233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.