Prupe.3G270300_v2.0.a1

PQQ enzyme repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0001008
Physical Location & Seq
Forward (+)
25163332 .. 25166194
2863 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G270300.1

Sequence Viewer

Length: 1032 bp
ATGGAGGTTGAGTGGCTGTCCAATTCTCCAAACAGTGGGACAGTTAGTTGGTTCTATACGGATATGCTTTCTTCATGTCAGTCGTTTGTGTTGTTTTGGGAAAGGACTATATACATTGGAACAGCATCACTAGAAGAAACTCTTAGCGCTGAGGAATGTTGTACCTTCCATGGCAGCTTTGCCAAATTAGATGTCAAATCTGGTACCATCTTATGGCAGACCTTTGTGCTGCTCGATAATCATGGAAAGCTAGGGCAATATTCCGGGCCAGCTATATGGGGCAGTAGTCCATCCATTGACGTCCATAGAAAACATGTATATATTGCTACTGGCAACATCTACTCAGTCCCTGAAAATGTAAGCCAATGCCAAGAAAATCAGAACAATAATAATTCAACCCTACCCACTCATCCAGATGCGTGTGTTGAGCCTCAAAACCACGGCAACTCAATCCTAGCCCTTGATCTGGACGGCGGCGATATCAAGTGGTACCGCCAGCTGGGCGGCTACGACGTGCCCCACTGGACCAAACCACCAATGATGCTCAGGACCTATGTCAATGGAAGCAAACTAGATACTGTTGTTGCTGTTCAGAAAAGTGGGTTTGCTTGGGCTCTAGATCGAAATAACGGCAGCCTTGTGTGGTCAACGGAGGTTGGACCTGGTGGGATTACTGGAGGAGGAACTTGGGGAGCAGCTACTGACAAGAAAAGGGTGTACACTAACATTGCTAACTCTGAGGGCAAAAACTTCACTCTTAACCCATCTAACAACATAACAACCGCGGTTAGTGTGGCTAATGGTGTGCTATTTGCTGGGTCCACAAATCCAAAAGGATCCATATACGCAATGAACACCAGAACTGGAAAAATTCTGTGGTCGAATGAGACCGGAGCAACCGTGTACGGTGGCATGTCAATAAGCAACGGCTGCATTTACGTTGGAAATGGATATAATGTTGGAATTGGATCCCTAACTTCAATGTTCACTGGCGGCACCTCTCTCTTCGCCTTTTGTACATGTGTGACGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PQQ PQQ_2 PQQ_3

Protein Analysis

344

Amino Acids

36.98

Weight (kDa)

5.79

Isoelectric Point (pI)

26.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 303
Acc65I GGTACC 2 cut(s) 203, 489
AccB1I GGYRCC 3 cut(s) 203, 489, 995
AccB7I CCANNNNNTGG 2 cut(s) 35, 213
AccII CGCG 1 cut(s) 785
AciI CCGC 6 cut(s) 474, 493, 504, 783, 785, 993
AclWI GGATC 4 cut(s) 831, 844, 963, 976
AcsI RAATTY 1 cut(s) 870
AcyI GRCGYC 1 cut(s) 300
AfaI GTAC 6 cut(s) 163, 205, 491, 719, 905, 1018
AfeI AGCGCT 1 cut(s) 148
AfiI CCNNNNNNNGG 4 cut(s) 35, 213, 466, 499
AflIII ACRYGT 2 cut(s) 313, 1019
AgsI TTSAA 2 cut(s) 396, 981
AjiI CACGTC 2 cut(s) 514, 1029
AjnI CCWGG 1 cut(s) 661
AluBI AGCT 5 cut(s) 177, 250, 272, 499, 698
AluI AGCT 5 cut(s) 177, 250, 272, 499, 698
Alw26I GTCTC 1 cut(s) 881
AlwI GGATC 4 cut(s) 831, 844, 963, 976
AlwNI CAGNNNCTG 2 cut(s) 350, 701
Aor51HI AGCGCT 1 cut(s) 148
AoxI GGCC 1 cut(s) 266
ApeKI GCWGC 5 cut(s) 174, 229, 633, 695, 930
ApoI RAATTY 1 cut(s) 870
ArsI GACNNNNNNTTYG 2 cut(s) 177, 209
Asp718I GGTACC 2 cut(s) 203, 489
AspLEI GCGC 1 cut(s) 149
AspS9I GGNCC 5 cut(s) 266, 525, 549, 659, 819
AsuC2I CCSGG 1 cut(s) 265
AvaII GGWCC 4 cut(s) 525, 549, 659, 819
BaeGI GKGCMC 1 cut(s) 519
BaeI ACNNNNGTAYC 2 cut(s) 567, 600
BamHI GGATCC 2 cut(s) 836, 968
BanI GGYRCC 3 cut(s) 203, 489, 995
BanII GRGCYC 1 cut(s) 616
BbvCI CCTCAGC 1 cut(s) 150
BbvI GCAGC 5 cut(s) 186, 216, 645, 707, 917
BccI CCATC 3 cut(s) 215, 298, 772
BceAI ACGGC 4 cut(s) 457, 487, 646, 943
BciT130I CCWGG 1 cut(s) 663
BcnI CCSGG 1 cut(s) 265
BcoDI GTCTC 1 cut(s) 881
BfaI CTAG 5 cut(s) 131, 251, 455, 572, 617
BfoI RGCGCY 1 cut(s) 150
BglI GCCNNNNNGGC 1 cut(s) 501
BisI GCNGC 8 cut(s) 175, 230, 475, 505, 634, 696, 931, 994
BlsI GCNGC 8 cut(s) 176, 231, 476, 506, 635, 697, 932, 995
Bme1390I CCNGG 2 cut(s) 265, 663
Bme18I GGWCC 4 cut(s) 525, 549, 659, 819
BmgBI CACGTC 2 cut(s) 514, 1029
BmgT120I GGNCC 5 cut(s) 266, 525, 549, 659, 819
BmiI GGNNCC 6 cut(s) 205, 491, 820, 838, 970, 997
BmrFI CCNGG 2 cut(s) 265, 663
BmsI GCATC 3 cut(s) 134, 406, 531
BoxI GACNNNNGTC 1 cut(s) 554
BpmI CTGGAG 1 cut(s) 696
Bpu10I CCTNAGC 2 cut(s) 150, 545
BpuMI CCSGG 1 cut(s) 265
BsaHI GRCGYC 1 cut(s) 300
BsaI GGTCTC 1 cut(s) 881
BsaJI CCNNGG 3 cut(s) 169, 439, 783
BsaWI WCCGGW 1 cut(s) 890
BsaXI ACNNNNNCTCC 3 cut(s) 26, 885, 915
Bsc4I CCNNNNNNNGG 4 cut(s) 35, 213, 466, 499
Bse1I ACTGG 5 cut(s) 334, 527, 679, 868, 994
Bse3DI GCAATG 2 cut(s) 726, 855
BseBI CCWGG 1 cut(s) 663
BseDI CCNNGG 3 cut(s) 169, 439, 783
BseGI GGATG 2 cut(s) 290, 409
BseLI CCNNNNNNNGG 4 cut(s) 35, 213, 466, 499
BseMI GCAATG 2 cut(s) 726, 855
BseMII CTCAG 4 cut(s) 141, 357, 559, 729
BseNI ACTGG 5 cut(s) 334, 527, 679, 868, 994
BseRI GAGGAG 1 cut(s) 693
BseSI GKGCMC 1 cut(s) 519
BseXI GCAGC 5 cut(s) 186, 216, 645, 707, 917
BseYI CCCAGC 2 cut(s) 499, 815
Bsh1236I CGCG 1 cut(s) 785
BshFI GGCC 1 cut(s) 268
BshNI GGYRCC 3 cut(s) 203, 489, 995
BsiSI CCGG 2 cut(s) 264, 891
BslFI GGGAC 2 cut(s) 52, 332
BslI CCNNNNNNNGG 4 cut(s) 35, 213, 466, 499
BsmAI GTCTC 1 cut(s) 881
BsmFI GGGAC 2 cut(s) 52, 332
BsnI GGCC 1 cut(s) 268
Bso31I GGTCTC 1 cut(s) 881
Bsp1286I GDGCHC 2 cut(s) 519, 616
Bsp1407I TGTACA 2 cut(s) 717, 1016
Bsp143I GATC 4 cut(s) 463, 619, 836, 968
Bsp19I CCATGG 1 cut(s) 169
BspACI CCGC 6 cut(s) 474, 493, 504, 783, 785, 993
BspANI GGCC 1 cut(s) 268
BspCNI CTCAG 4 cut(s) 142, 356, 558, 730
BspFNI CGCG 1 cut(s) 785
BspLI GGNNCC 6 cut(s) 205, 491, 820, 838, 970, 997
BspPI GGATC 4 cut(s) 831, 844, 963, 976
BspT107I GGYRCC 3 cut(s) 203, 489, 995
BspTNI GGTCTC 1 cut(s) 881
BsrDI GCAATG 2 cut(s) 726, 855
BsrGI TGTACA 2 cut(s) 717, 1016
BsrI ACTGG 5 cut(s) 334, 527, 679, 868, 994
BssECI CCNNGG 3 cut(s) 169, 439, 783
BssMI GATC 4 cut(s) 463, 619, 836, 968
BssNI GRCGYC 1 cut(s) 300
BssT1I CCWWGG 1 cut(s) 169
Bst2UI CCWGG 1 cut(s) 663
Bst4CI ACNGT 5 cut(s) 35, 43, 580, 901, 908
Bst6I CTCTTC 1 cut(s) 1010
BstACI GRCGYC 1 cut(s) 300
BstAPI GCANNNNNTGC 1 cut(s) 930
BstAUI TGTACA 2 cut(s) 717, 1016
BstC8I GCNNGC 2 cut(s) 270, 497
BstDEI CTNAG 5 cut(s) 143, 150, 343, 545, 738
BstDSI CCRYGG 3 cut(s) 169, 439, 783
BstF5I GGATG 2 cut(s) 290, 409
BstFNI CGCG 1 cut(s) 785
BstH2I RGCGCY 1 cut(s) 150
BstHHI GCGC 1 cut(s) 149
BstKTI GATC 4 cut(s) 466, 622, 839, 971
BstMAI GTCTC 1 cut(s) 881
BstMBI GATC 4 cut(s) 463, 619, 836, 968
BstMWI GCNNNNNNNGC 2 cut(s) 501, 930
BstNI CCWGG 1 cut(s) 663
BstNSI RCATGY 3 cut(s) 317, 916, 1023
BstPAI GACNNNNGTC 1 cut(s) 554
BstSCI CCNGG 2 cut(s) 263, 661
BstSLI GKGCMC 1 cut(s) 519
BstUI CGCG 1 cut(s) 785
BstV1I GCAGC 5 cut(s) 186, 216, 645, 707, 917
BstX2I RGATCY 2 cut(s) 836, 968
BstXI CCANNNNNNTGG 1 cut(s) 276
BstYI RGATCY 2 cut(s) 836, 968
BsuRI GGCC 1 cut(s) 268
BtgI CCRYGG 3 cut(s) 169, 439, 783
BtrI CACGTC 2 cut(s) 514, 1029
BtsCI GGATG 2 cut(s) 290, 409
BtsIMutI CAGTG 3 cut(s) 40, 520, 987
Cac8I GCNNGC 2 cut(s) 270, 497
CaiI CAGNNNCTG 2 cut(s) 350, 701
CfoI GCGC 1 cut(s) 149
Cfr13I GGNCC 5 cut(s) 266, 525, 549, 659, 819
Cfr42I CCGCGG 1 cut(s) 786
CsiI ACCWGGT 1 cut(s) 661
Csp6I GTAC 6 cut(s) 162, 204, 490, 718, 904, 1017
CviAII CATG 6 cut(s) 75, 170, 242, 314, 913, 1020
CviQI GTAC 6 cut(s) 162, 204, 490, 718, 904, 1017
DdeI CTNAG 5 cut(s) 143, 150, 343, 545, 738
DpnI GATC 4 cut(s) 465, 621, 838, 970
DpnII GATC 4 cut(s) 463, 619, 836, 968
Eam1104I CTCTTC 1 cut(s) 1010
EarI CTCTTC 1 cut(s) 1010
Eco130I CCWWGG 1 cut(s) 169
Eco24I GRGCYC 1 cut(s) 616
Eco31I GGTCTC 1 cut(s) 881
Eco32I GATATC 1 cut(s) 481
Eco47I GGWCC 4 cut(s) 525, 549, 659, 819
Eco47III AGCGCT 1 cut(s) 148
EcoO109I RGGNCCY 1 cut(s) 549
EcoRII CCWGG 1 cut(s) 661
EcoRV GATATC 1 cut(s) 481
EcoT14I CCWWGG 1 cut(s) 169
EcoT38I GRGCYC 1 cut(s) 616
ErhI CCWWGG 1 cut(s) 169
FaeI CATG 6 cut(s) 78, 173, 245, 317, 916, 1023
FalI AAGNNNNNCTT 2 cut(s) 126, 158
FaqI GGGAC 2 cut(s) 52, 332
FatI CATG 6 cut(s) 74, 169, 241, 313, 912, 1019
Fnu4HI GCNGC 8 cut(s) 175, 230, 475, 505, 634, 696, 931, 994
FokI GGATG 2 cut(s) 277, 396
FriOI GRGCYC 1 cut(s) 616
Fsp4HI GCNGC 8 cut(s) 175, 230, 475, 505, 634, 696, 931, 994
FspBI CTAG 5 cut(s) 131, 251, 455, 572, 617
GlaI GCGC 1 cut(s) 148
GluI GCNGC 8 cut(s) 175, 230, 475, 505, 634, 696, 931, 994
GsaI CCCAGC 2 cut(s) 503, 819
GsuI CTGGAG 1 cut(s) 696
HaeII RGCGCY 1 cut(s) 150
HaeIII GGCC 1 cut(s) 268
HapII CCGG 2 cut(s) 264, 891
HhaI GCGC 1 cut(s) 149
Hin1I GRCGYC 1 cut(s) 300
Hin1II CATG 6 cut(s) 78, 173, 245, 317, 916, 1023
Hin6I GCGC 1 cut(s) 147
HinP1I GCGC 1 cut(s) 147
HincII GTYRAC 1 cut(s) 648
HindII GTYRAC 1 cut(s) 648
HpaII CCGG 2 cut(s) 264, 891
Hpy166II GTNNAC 6 cut(s) 648, 718, 720, 822, 904, 987
Hpy188I TCNGA 3 cut(s) 381, 594, 739
Hpy188III TCNNGA 4 cut(s) 413, 467, 547, 617
Hpy8I GTNNAC 6 cut(s) 648, 718, 720, 822, 904, 987
Hpy99I CGWCG 1 cut(s) 515
HpyAV CCTTC 1 cut(s) 175
HpyCH4III ACNGT 5 cut(s) 35, 43, 580, 901, 908
HpyCH4IV ACGT 4 cut(s) 300, 513, 939, 1028
HpyCH4V TGCA 1 cut(s) 933
HpyF10VI GCNNNNNNNGC 2 cut(s) 501, 930
HpyF3I CTNAG 5 cut(s) 143, 150, 343, 545, 738
HpySE526I ACGT 4 cut(s) 300, 513, 939, 1028
Hsp92I GRCGYC 1 cut(s) 300
Hsp92II CATG 6 cut(s) 78, 173, 245, 317, 916, 1023
HspAI GCGC 1 cut(s) 147
KpnI GGTACC 2 cut(s) 207, 493
KspI CCGCGG 1 cut(s) 786
Kzo9I GATC 4 cut(s) 463, 619, 836, 968
LmnI GCTCC 2 cut(s) 692, 893
Lsp1109I GCAGC 5 cut(s) 186, 216, 645, 707, 917
LweI GCATC 3 cut(s) 134, 406, 531
MabI ACCWGGT 1 cut(s) 661
MaeI CTAG 5 cut(s) 131, 251, 455, 572, 617
MaeII ACGT 4 cut(s) 300, 513, 939, 1028
MaeIII GTNAC 1 cut(s) 1024
MalI GATC 4 cut(s) 465, 621, 838, 970
MboI GATC 4 cut(s) 463, 619, 836, 968
MboII GAAGA 3 cut(s) 63, 146, 997
MflI RGATCY 2 cut(s) 836, 968
MhlI GDGCHC 2 cut(s) 519, 616
MluCI AATT 5 cut(s) 22, 185, 391, 870, 963
MmeI TCCRAC 3 cut(s) 637, 922, 940
MnlI CCTC 7 cut(s) 145, 441, 646, 671, 674, 733, 1009
MseI TTAA 1 cut(s) 759
MslI CAYNNNNRTG 1 cut(s) 414
MspA1I CMGCKG 2 cut(s) 499, 785
MspI CCGG 2 cut(s) 264, 891
MspR9I CCNGG 2 cut(s) 265, 663
MvaI CCWGG 1 cut(s) 663
MvnI CGCG 1 cut(s) 785
MwoI GCNNNNNNNGC 2 cut(s) 501, 930
NciI CCSGG 1 cut(s) 265
NcoI CCATGG 1 cut(s) 169
NdeII GATC 4 cut(s) 463, 619, 836, 968
NlaIII CATG 6 cut(s) 78, 173, 245, 317, 916, 1023
NlaIV GGNNCC 6 cut(s) 205, 491, 820, 838, 970, 997
NmuCI GTSAC 1 cut(s) 1024
NspI RCATGY 3 cut(s) 317, 916, 1023
PciI ACATGT 2 cut(s) 313, 1019
PflMI CCANNNNNTGG 2 cut(s) 35, 213
PkrI GCNGC 8 cut(s) 176, 231, 476, 506, 635, 697, 932, 995
PpuMI RGGWCCY 1 cut(s) 549
PscI ACATGT 2 cut(s) 313, 1019
PshAI GACNNNNGTC 1 cut(s) 554
Psp5II RGGWCCY 1 cut(s) 549
Psp6I CCWGG 1 cut(s) 661
PspFI CCCAGC 2 cut(s) 499, 815
PspGI CCWGG 1 cut(s) 661
PspN4I GGNNCC 6 cut(s) 205, 491, 820, 838, 970, 997
PspPI GGNCC 5 cut(s) 266, 525, 549, 659, 819
PspPPI RGGWCCY 1 cut(s) 549
PstNI CAGNNNCTG 2 cut(s) 350, 701
PsuI RGATCY 2 cut(s) 836, 968
PvuII CAGCTG 1 cut(s) 499
RsaI GTAC 6 cut(s) 163, 205, 491, 719, 905, 1018
RsaNI GTAC 6 cut(s) 162, 204, 490, 718, 904, 1017
RseI CAYNNNNRTG 1 cut(s) 414
SacII CCGCGG 1 cut(s) 786
SaqAI TTAA 1 cut(s) 759
SatI GCNGC 8 cut(s) 175, 230, 475, 505, 634, 696, 931, 994
Sau3AI GATC 4 cut(s) 463, 619, 836, 968
Sau96I GGNCC 5 cut(s) 266, 525, 549, 659, 819
ScrFI CCNGG 2 cut(s) 265, 663
SduI GDGCHC 2 cut(s) 519, 616
SexAI ACCWGGT 1 cut(s) 661
SfaNI GCATC 3 cut(s) 134, 406, 531
Sfr303I CCGCGG 1 cut(s) 786
SgrBI CCGCGG 1 cut(s) 786
SinI GGWCC 4 cut(s) 525, 549, 659, 819
SmiMI CAYNNNNRTG 1 cut(s) 414
Sse9I AATT 5 cut(s) 22, 185, 391, 870, 963
SsiI CCGC 6 cut(s) 474, 493, 504, 783, 785, 993
SspI AATATT 1 cut(s) 260
SspMI CTAG 5 cut(s) 131, 251, 455, 572, 617
StyD4I CCNGG 2 cut(s) 263, 661
StyI CCWWGG 1 cut(s) 169
TaaI ACNGT 5 cut(s) 35, 43, 580, 901, 908
TaiI ACGT 4 cut(s) 303, 516, 942, 1031
TaqI TCGA 3 cut(s) 234, 622, 881
TasI AATT 5 cut(s) 22, 185, 391, 870, 963
TatI WGTACW 2 cut(s) 717, 1016
TauI GCSGC 3 cut(s) 477, 507, 996
Tru1I TTAA 1 cut(s) 759
Tru9I TTAA 1 cut(s) 759
TscAI CASTG 3 cut(s) 40, 527, 994
TseFI GTSAC 1 cut(s) 1024
TseI GCWGC 5 cut(s) 174, 229, 633, 695, 930
Tsp45I GTSAC 1 cut(s) 1024
TspDTI ATGAA 2 cut(s) 63, 866
TspGWI ACGGA 2 cut(s) 74, 665
TspRI CASTG 3 cut(s) 40, 527, 994
Van91I CCANNNNNTGG 2 cut(s) 35, 213
VpaK11BI GGWCC 4 cut(s) 525, 549, 659, 819
XapI RAATTY 1 cut(s) 870
XbaI TCTAGA 1 cut(s) 616
XceI RCATGY 3 cut(s) 317, 916, 1023
XspI CTAG 5 cut(s) 131, 251, 455, 572, 617
ZraI GACGTC 1 cut(s) 301
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.