Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8508477.1

Orthogroup ID

OG0001008

Physical Location & Seq

Genomic Coordinates Forward (+)

3149 .. 3478

Gene Structure 330 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8508477.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

atgctaccagacaactttggcaagtttggagagtacgctggtgcagcaatctggggaagtagtccttctatcgatgtgaagcgcaaccatgtctacattgccacttcgaacctgtattcagctcctccgcgtataattgaatgccaggaaagggaaaataatcaaaccataccttcacaaccagacgcctgcattgagcctgacaaccactccgagtctattgtagcccttgatttagacaccggcaaaatcaaatggtacaagcagctgggaggctatgatatatggttcggtgcatgccatcggcatttggacccaaggtgccctccc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PQQ PQQ_2 PQQ_3

Protein Analysis

110

Amino Acids

12.34

Weight (kDa)

5.43

Isoelectric Point (pI)

57.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001008)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g31710 FvH4_4g31710 FvH4_6g49090 FvH4_6g49090 FvH4_6g49090 FvH4_6g49090 FvH4_6g49090 FvH4_6g49110 FvH4_6g49111
malus_domestica	MD09G1048500.v1.1 MD09G1048700.v1.1 MD13G1077000.v1.1 MD17G1048600.v1.1
prunus_persica	Prupe.1G270000_v2.0.a1 Prupe.3G270300_v2.0.a1 Prupe.3G270400_v2.0.a1 Prupe.3G270500_v2.0.a1 Prupe.3G270600_v2.0.a1
pyrus_communis	pycom13g06710 pycom17g04320 pycom17g04340
rosa_chinensis	RchiOBHm_Chr2g0168951 RchiOBHm_Chr2g0168981 RchiOBHm_Chr2g0168991 RchiOBHm_Chr4g0440311
rosa_laevigata	RLG00000006193 RLG00000021816 RLG00000021819 RLG00000021820 RLG00000021821
rosa_multiflora	Rmu_co8508477.1_g000001 Rmu_co8508477.1_g000002 Rmu_co8508477.1_g000003 Rmu_sc0001685.1_g000040 Rmu_ssc0000393.1_g000016 Rmu_ssc0000393.1_g000019 Rmu_ssc0000393.1_g000020
rosa_roxburghii	Rroxscaffold_2G00082560 Rroxscaffold_2G00082570 Rroxscaffold_5G00381190
rosa_rugosa	Rorug02G0536200 Rorug02G0536300.1 Rorug02G0536400 Rorug02G0536400 Rorug04G0325500
rosa_samantha	Rh2AG607300 Rh2AG607500 Rh2BG620000 Rh2CG588600 Rh2CG588700 Rh2CG588900 Rh2CG589000 Rh2DG630700 Rh2DG630800 Rh4AG376400 Rh4BG389400 Rh4CG404200 Rh4DG383100
rosa_wichuraiana	Rw2G050350 Rw2G050360 Rw2G050370 Rw4G032220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	321
AccI	GTMKAC	1 cut(s)	93
AccII	CGCG	1 cut(s)	130
AciI	CCGC	1 cut(s)	128
AcyI	GRCGYC	1 cut(s)	186
AfaI	GTAC	2 cut(s)	35, 260
AfiI	CCNNNNNNNGG	1 cut(s)	151
AgsI	TTSAA	1 cut(s)	140
AjnI	CCWGG	1 cut(s)	144
AluBI	AGCT	2 cut(s)	122, 268
AluI	AGCT	2 cut(s)	122, 268
ApeKI	GCWGC	2 cut(s)	44, 265
AspLEI	GCGC	1 cut(s)	84
AspS9I	GGNCC	1 cut(s)	313
AsuII	TTCGAA	1 cut(s)	107
AvaII	GGWCC	1 cut(s)	313
BaeGI	GKGCMC	1 cut(s)	326
BanI	GGYRCC	1 cut(s)	321
BbvI	GCAGC	2 cut(s)	56, 277
BccI	CCATC	1 cut(s)	309
BciT130I	CCWGG	1 cut(s)	146
BisI	GCNGC	2 cut(s)	45, 266
BlsI	GCNGC	2 cut(s)	46, 267
Bme1390I	CCNGG	1 cut(s)	146
Bme18I	GGWCC	1 cut(s)	313
BmgT120I	GGNCC	1 cut(s)	313
BmiI	GGNNCC	2 cut(s)	315, 323
BmrFI	CCNGG	1 cut(s)	146
Bpu14I	TTCGAA	1 cut(s)	107
Bsa29I	ATCGAT	1 cut(s)	72
BsaHI	GRCGYC	1 cut(s)	186
BsaJI	CCNNGG	1 cut(s)	317
BsaXI	ACNNNNNCTCC	2 cut(s)	194, 224
Bsc4I	CCNNNNNNNGG	1 cut(s)	151
Bse118I	RCCGGY	1 cut(s)	242
Bse3DI	GCAATG	1 cut(s)	96
BseBI	CCWGG	1 cut(s)	146
BseCI	ATCGAT	1 cut(s)	72
BseDI	CCNNGG	1 cut(s)	317
BseLI	CCNNNNNNNGG	1 cut(s)	151
BseMI	GCAATG	1 cut(s)	96
BseRI	GAGGAG	1 cut(s)	114
BseSI	GKGCMC	1 cut(s)	326
BseXI	GCAGC	2 cut(s)	56, 277
BseYI	CCCAGC	1 cut(s)	268
BsgI	GTGCAG	1 cut(s)	63
Bsh1236I	CGCG	1 cut(s)	130
BshNI	GGYRCC	1 cut(s)	321
BshVI	ATCGAT	1 cut(s)	72
BsiSI	CCGG	1 cut(s)	243
BslI	CCNNNNNNNGG	1 cut(s)	151
BsmI	GAATGC	1 cut(s)	146
Bsp119I	TTCGAA	1 cut(s)	107
Bsp1286I	GDGCHC	1 cut(s)	326
BspACI	CCGC	1 cut(s)	128
BspDI	ATCGAT	1 cut(s)	72
BspFNI	CGCG	1 cut(s)	130
BspLI	GGNNCC	2 cut(s)	315, 323
BspT104I	TTCGAA	1 cut(s)	107
BspT107I	GGYRCC	1 cut(s)	321
BsrDI	GCAATG	1 cut(s)	96
BsrFI	RCCGGY	1 cut(s)	242
BssAI	RCCGGY	1 cut(s)	242
BssECI	CCNNGG	1 cut(s)	317
BssNI	GRCGYC	1 cut(s)	186
BssT1I	CCWWGG	1 cut(s)	317
Bst2UI	CCWGG	1 cut(s)	146
BstACI	GRCGYC	1 cut(s)	186
BstBI	TTCGAA	1 cut(s)	107
BstC8I	GCNNGC	2 cut(s)	190, 298
BstFNI	CGCG	1 cut(s)	130
BstHHI	GCGC	1 cut(s)	84
BstMWI	GCNNNNNNNGC	1 cut(s)	44
BstNI	CCWGG	1 cut(s)	146
BstNSI	RCATGY	1 cut(s)	300
BstSCI	CCNGG	1 cut(s)	144
BstSLI	GKGCMC	1 cut(s)	326
BstUI	CGCG	1 cut(s)	130
BstV1I	GCAGC	2 cut(s)	56, 277
Bsu15I	ATCGAT	1 cut(s)	72
BsuTUI	ATCGAT	1 cut(s)	72
Cac8I	GCNNGC	2 cut(s)	190, 298
CfoI	GCGC	1 cut(s)	84
Cfr10I	RCCGGY	1 cut(s)	242
Cfr13I	GGNCC	1 cut(s)	313
ClaI	ATCGAT	1 cut(s)	72
CseI	GACGC	1 cut(s)	194
Csp6I	GTAC	2 cut(s)	34, 259
CviAII	CATG	2 cut(s)	89, 297
CviJI	RGCY	5 cut(s)	122, 199, 227, 268, 276
CviKI_1	RGCY	5 cut(s)	122, 199, 227, 268, 276
CviQI	GTAC	2 cut(s)	34, 259
Eco130I	CCWWGG	1 cut(s)	317
Eco47I	GGWCC	1 cut(s)	313
EcoRII	CCWGG	1 cut(s)	144
EcoT14I	CCWWGG	1 cut(s)	317
ErhI	CCWWGG	1 cut(s)	317
FaeI	CATG	2 cut(s)	92, 300
FaiI	YATR	7 cut(s)	90, 134, 170, 279, 284, 286, 298
FalI	AAGNNNNNCTT	2 cut(s)	49, 81
FatI	CATG	2 cut(s)	88, 296
FblI	GTMKAC	1 cut(s)	93
Fnu4HI	GCNGC	2 cut(s)	45, 266
Fsp4HI	GCNGC	2 cut(s)	45, 266
GlaI	GCGC	1 cut(s)	83
GluI	GCNGC	2 cut(s)	45, 266
GsaI	CCCAGC	1 cut(s)	272
HapII	CCGG	1 cut(s)	243
HgaI	GACGC	1 cut(s)	194
HhaI	GCGC	1 cut(s)	84
Hin1I	GRCGYC	1 cut(s)	186
Hin1II	CATG	2 cut(s)	92, 300
Hin6I	GCGC	1 cut(s)	82
HinP1I	GCGC	1 cut(s)	82
HinfI	GANTC	1 cut(s)	215
HpaII	CCGG	1 cut(s)	243
Hpy166II	GTNNAC	1 cut(s)	94
Hpy188I	TCNGA	1 cut(s)	214
Hpy8I	GTNNAC	1 cut(s)	94
HpyAV	CCTTC	2 cut(s)	75, 183
HpyCH4V	TGCA	3 cut(s)	44, 192, 296
HpyF10VI	GCNNNNNNNGC	1 cut(s)	44
Hsp92I	GRCGYC	1 cut(s)	186
Hsp92II	CATG	2 cut(s)	92, 300
HspAI	GCGC	1 cut(s)	82
LmnI	GCTCC	1 cut(s)	127
Lsp1109I	GCAGC	2 cut(s)	56, 277
MhlI	GDGCHC	1 cut(s)	326
MluCI	AATT	1 cut(s)	135
MlyI	GAGTC	1 cut(s)	224
MnlI	CCTC	2 cut(s)	135, 266
MspA1I	CMGCKG	1 cut(s)	268
MspI	CCGG	1 cut(s)	243
MspR9I	CCNGG	1 cut(s)	146
Mva1269I	GAATGC	1 cut(s)	146
MvaI	CCWGG	1 cut(s)	146
MvnI	CGCG	1 cut(s)	130
MwoI	GCNNNNNNNGC	1 cut(s)	44
NlaIII	CATG	2 cut(s)	92, 300
NlaIV	GGNNCC	2 cut(s)	315, 323
NspI	RCATGY	1 cut(s)	300
NspV	TTCGAA	1 cut(s)	107
PaeI	GCATGC	1 cut(s)	300
PctI	GAATGC	1 cut(s)	146
PkrI	GCNGC	2 cut(s)	46, 267
PleI	GAGTC	1 cut(s)	223
PpsI	GAGTC	1 cut(s)	223
Psp6I	CCWGG	1 cut(s)	144
PspFI	CCCAGC	1 cut(s)	268
PspGI	CCWGG	1 cut(s)	144
PspN4I	GGNNCC	2 cut(s)	315, 323
PspPI	GGNCC	1 cut(s)	313
PvuII	CAGCTG	1 cut(s)	268
RsaI	GTAC	2 cut(s)	35, 260
RsaNI	GTAC	2 cut(s)	34, 259
SatI	GCNGC	2 cut(s)	45, 266
Sau96I	GGNCC	1 cut(s)	313
SchI	GAGTC	1 cut(s)	224
ScrFI	CCNGG	1 cut(s)	146
SduI	GDGCHC	1 cut(s)	326
SetI	ASST	5 cut(s)	114, 124, 175, 270, 323
SfuI	TTCGAA	1 cut(s)	107
SinI	GGWCC	1 cut(s)	313
SphI	GCATGC	1 cut(s)	300
Sse9I	AATT	1 cut(s)	135
SsiI	CCGC	1 cut(s)	128
StyD4I	CCNGG	1 cut(s)	144
StyI	CCWWGG	1 cut(s)	317
TaqI	TCGA	2 cut(s)	72, 107
TasI	AATT	1 cut(s)	135
TseI	GCWGC	2 cut(s)	44, 265
VpaK11BI	GGWCC	1 cut(s)	313
XceI	RCATGY	1 cut(s)	300
XmiI	GTMKAC	1 cut(s)	93

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.