Rorug04G0325500

PQQ-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0001008
Physical Location & Seq
Reverse (-)
50024745 .. 50026669
1925 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0325500.1

Sequence Viewer

Length: 807 bp
ATGGCTTCTGCTTGGGCTTCATCTGCCATTGCAGCTGTGTCTTCTCCCAGCTCGCAGAAAGCGGGGTCTGCTTTGGCAGCAACAAAGGCTTCGTTTTTTGGCGGGAGGAAGCTGAGAGTGAGAAACGTGGCAGCACCGAGTGGATCATCATCAACTTCTTTTAGAGTATGTGCTACTGCTGCTGACCCTGACAGACCCCTATGGTTCCCGGGAAGCACCCCTCCTCCATGGCTAGACGGGAGCCTTCCAGGAGACTTTGGCTTTGATCCGCTTGGTCTTTCATCTGACCCTGACAGCCTAAAGTGGAACACACAAGCCGAGCTCGTACACTGCCGGTGGGCGATGTTGGGCGCCGCCGGGATCTTCATCCCAGAATTCTTGACAAAGATTGGCATCCTAAACACTCCTTCATGGTACACAGCAGGAGAACAAGAGTACTTCACTGACACTACCACCCTTTTCATTGTTGAGCTGATTTTCATCGGGTGGGCCGAGGGGAGGAGATGGGCTGACATCCTCAAGCCTGGGTCTGTTAACACCGACCCAATCTTCCCCAACAACAAGCTCACCGGGACAGACGTAGGATACCCAGGCGGGCTCTGGTTCGACCCACTTGGATGGGGAAGTGGCTCACCCGAGAAGATCAAGGAGTTGAGGACAAAGGAGATCAAGAATGGGAGATTGGCTATGTTGGCTGTGATGGGTGCTTGGTTTCAACACATCTACACCGGTACCGGCCCCATTGACAACCTCTTTGCTCACCTTGCTGATCCCGGCCACGCCACTGTTTTTGCAGCTTTCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PQQ PQQ_2

Protein Analysis

268

Amino Acids

28.74

Weight (kDa)

6.42

Isoelectric Point (pI)

32.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Chloroa_b-bind PF00504 74 - 240 2.4e-53 Chlorophyll A-B binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 731
AccB1I GGYRCC 2 cut(s) 350, 731
AciI CCGC 5 cut(s) 62, 102, 269, 354, 594
AclWI GGATC 4 cut(s) 151, 260, 368, 764
AcoI YGGCCR 1 cut(s) 775
AcsI RAATTY 1 cut(s) 374
AcyI GRCGYC 1 cut(s) 351
AdeI CACNNNGTG 1 cut(s) 140
AfaI GTAC 4 cut(s) 327, 416, 437, 733
AfiI CCNNNNNNNGG 1 cut(s) 498
AgeI ACCGGT 1 cut(s) 728
AgsI TTSAA 2 cut(s) 716, 802
AjnI CCWGG 3 cut(s) 247, 523, 589
AjuI GAANNNNNNNTTGG 2 cut(s) 665, 697
AluBI AGCT 7 cut(s) 35, 51, 112, 322, 472, 565, 797
AluI AGCT 7 cut(s) 35, 51, 112, 322, 472, 565, 797
Alw21I GWGCWC 1 cut(s) 324
Alw26I GTCTC 1 cut(s) 246
AlwI GGATC 4 cut(s) 151, 260, 368, 764
Ama87I CYCGRG 2 cut(s) 208, 635
AoxI GGCC 3 cut(s) 489, 736, 775
ApeKI GCWGC 5 cut(s) 32, 77, 131, 179, 794
ApoI RAATTY 1 cut(s) 374
ArsI GACNNNNNNTTYG 4 cut(s) 245, 277, 737, 769
AsiGI ACCGGT 1 cut(s) 728
Asp718I GGTACC 1 cut(s) 731
AspLEI GCGC 1 cut(s) 353
AspS9I GGNCC 2 cut(s) 489, 737
AsuC2I CCSGG 5 cut(s) 209, 210, 358, 571, 774
AsuHPI GGTGA 3 cut(s) 559, 624, 752
AvaI CYCGRG 2 cut(s) 208, 635
BaeI ACNNNNGTAYC 2 cut(s) 715, 748
BanI GGYRCC 2 cut(s) 350, 731
BanII GRGCYC 2 cut(s) 324, 600
BbsI GAAGAC 1 cut(s) 33
Bbv12I GWGCWC 1 cut(s) 324
BbvI GCAGC 4 cut(s) 44, 89, 143, 166
BccI CCATC 3 cut(s) 498, 612, 694
BciT130I CCWGG 3 cut(s) 249, 525, 591
BciVI GTATCC 1 cut(s) 578
BcnI CCSGG 5 cut(s) 209, 210, 358, 571, 774
BcoDI GTCTC 1 cut(s) 246
BfaI CTAG 1 cut(s) 233
BfoI RGCGCY 1 cut(s) 354
BfuI GTATCC 1 cut(s) 578
BisI GCNGC 6 cut(s) 33, 78, 132, 180, 354, 795
BlsI GCNGC 6 cut(s) 34, 79, 133, 181, 355, 796
BmcAI AGTACT 1 cut(s) 437
Bme1390I CCNGG 8 cut(s) 209, 210, 249, 358, 525, 571, 591, 774
BmeT110I CYCGRG 2 cut(s) 208, 635
BmgT120I GGNCC 2 cut(s) 489, 737
BmiI GGNNCC 5 cut(s) 206, 242, 352, 733, 739
BmrFI CCNGG 8 cut(s) 209, 210, 249, 358, 525, 571, 591, 774
BmsI GCATC 1 cut(s) 402
BpiI GAAGAC 1 cut(s) 33
BpuEI CTTGAG 1 cut(s) 503
BpuMI CCSGG 5 cut(s) 209, 210, 358, 571, 774
BsaBI GATNNNNATC 4 cut(s) 148, 365, 392, 479
BsaHI GRCGYC 1 cut(s) 351
BsaJI CCNNGG 5 cut(s) 208, 227, 492, 524, 589
BsaWI WCCGGW 1 cut(s) 728
BsaXI ACNNNNNCTCC 2 cut(s) 208, 238
Bsc4I CCNNNNNNNGG 1 cut(s) 498
Bse118I RCCGGY 3 cut(s) 333, 728, 734
Bse3DI GCAATG 1 cut(s) 27
Bse8I GATNNNNATC 4 cut(s) 148, 365, 392, 479
BseBI CCWGG 3 cut(s) 249, 525, 591
BseDI CCNNGG 5 cut(s) 208, 227, 492, 524, 589
BseGI GGATG 4 cut(s) 366, 393, 513, 623
BseJI GATNNNNATC 4 cut(s) 148, 365, 392, 479
BseLI CCNNNNNNNGG 1 cut(s) 498
BseMI GCAATG 1 cut(s) 27
BseMII CTCAG 1 cut(s) 104
BseRI GAGGAG 2 cut(s) 213, 514
BseXI GCAGC 4 cut(s) 44, 89, 143, 166
BseYI CCCAGC 1 cut(s) 47
BshFI GGCC 3 cut(s) 491, 738, 777
BshNI GGYRCC 2 cut(s) 350, 731
BshTI ACCGGT 1 cut(s) 728
BsiHKAI GWGCWC 1 cut(s) 324
BsiHKCI CYCGRG 2 cut(s) 208, 635
BsiSI CCGG 7 cut(s) 209, 334, 357, 570, 729, 735, 774
BslFI GGGAC 1 cut(s) 586
BslI CCNNNNNNNGG 1 cut(s) 498
BsmAI GTCTC 1 cut(s) 246
BsmFI GGGAC 1 cut(s) 586
BsnI GGCC 3 cut(s) 491, 738, 777
BsoBI CYCGRG 2 cut(s) 208, 635
Bsp1286I GDGCHC 2 cut(s) 324, 600
Bsp143I GATC 6 cut(s) 143, 265, 360, 642, 666, 769
Bsp19I CCATGG 1 cut(s) 227
BspACI CCGC 5 cut(s) 62, 102, 269, 354, 594
BspANI GGCC 3 cut(s) 491, 738, 777
BspCNI CTCAG 1 cut(s) 105
BspLI GGNNCC 5 cut(s) 206, 242, 352, 733, 739
BspPI GGATC 4 cut(s) 151, 260, 368, 764
BspT107I GGYRCC 2 cut(s) 350, 731
BsrDI GCAATG 1 cut(s) 27
BsrFI RCCGGY 3 cut(s) 333, 728, 734
BssAI RCCGGY 3 cut(s) 333, 728, 734
BssECI CCNNGG 5 cut(s) 208, 227, 492, 524, 589
BssMI GATC 6 cut(s) 143, 265, 360, 642, 666, 769
BssNI GRCGYC 1 cut(s) 351
BssT1I CCWWGG 1 cut(s) 227
Bst2UI CCWGG 3 cut(s) 249, 525, 591
Bst4CI ACNGT 1 cut(s) 787
BstACI GRCGYC 1 cut(s) 351
BstC8I GCNNGC 2 cut(s) 53, 596
BstDEI CTNAG 1 cut(s) 113
BstDSI CCRYGG 1 cut(s) 227
BstF5I GGATG 4 cut(s) 366, 393, 513, 623
BstH2I RGCGCY 1 cut(s) 354
BstHHI GCGC 1 cut(s) 353
BstKTI GATC 6 cut(s) 146, 268, 363, 645, 669, 772
BstMAI GTCTC 1 cut(s) 246
BstMBI GATC 6 cut(s) 143, 265, 360, 642, 666, 769
BstMWI GCNNNNNNNGC 8 cut(s) 23, 32, 68, 77, 86, 179, 692, 764
BstNI CCWGG 3 cut(s) 249, 525, 591
BstSCI CCNGG 8 cut(s) 207, 208, 247, 356, 523, 569, 589, 772
BstV1I GCAGC 4 cut(s) 44, 89, 143, 166
BstV2I GAAGAC 1 cut(s) 33
BstX2I RGATCY 1 cut(s) 360
BstXI CCANNNNNNTGG 1 cut(s) 618
BstYI RGATCY 1 cut(s) 360
BsuI GTATCC 1 cut(s) 578
BsuRI GGCC 3 cut(s) 491, 738, 777
BtgI CCRYGG 1 cut(s) 227
BtgZI GCGATG 1 cut(s) 356
BtsCI GGATG 4 cut(s) 366, 393, 513, 623
BtsI GCAGTG 1 cut(s) 328
BtsIMutI CAGTG 3 cut(s) 328, 441, 783
Cac8I GCNNGC 2 cut(s) 53, 596
CfoI GCGC 1 cut(s) 353
Cfr10I RCCGGY 3 cut(s) 333, 728, 734
Cfr13I GGNCC 2 cut(s) 489, 737
Cfr9I CCCGGG 1 cut(s) 208
Csp6I GTAC 4 cut(s) 326, 415, 436, 732
CspAI ACCGGT 1 cut(s) 728
CspCI CAANNNNNGTGG 2 cut(s) 772, 807
CviAII CATG 2 cut(s) 228, 411
CviQI GTAC 4 cut(s) 326, 415, 436, 732
DdeI CTNAG 1 cut(s) 113
DinI GGCGCC 1 cut(s) 352
DpnI GATC 6 cut(s) 145, 267, 362, 644, 668, 771
DpnII GATC 6 cut(s) 143, 265, 360, 642, 666, 769
DraIII CACNNNGTG 1 cut(s) 140
EaeI YGGCCR 1 cut(s) 775
Ecl136II GAGCTC 1 cut(s) 322
Eco130I CCWWGG 1 cut(s) 227
Eco24I GRGCYC 2 cut(s) 324, 600
Eco53kI GAGCTC 1 cut(s) 322
Eco88I CYCGRG 2 cut(s) 208, 635
EcoICRI GAGCTC 1 cut(s) 322
EcoRI GAATTC 1 cut(s) 374
EcoRII CCWGG 3 cut(s) 247, 523, 589
EcoT14I CCWWGG 1 cut(s) 227
EcoT38I GRGCYC 2 cut(s) 324, 600
EgeI GGCGCC 1 cut(s) 352
EheI GGCGCC 1 cut(s) 352
ErhI CCWWGG 1 cut(s) 227
FaeI CATG 2 cut(s) 231, 414
FaiI YATR 5 cut(s) 169, 202, 229, 412, 689
FaqI GGGAC 1 cut(s) 586
FatI CATG 2 cut(s) 227, 410
FauI CCCGC 3 cut(s) 55, 95, 587
Fnu4HI GCNGC 6 cut(s) 33, 78, 132, 180, 354, 795
FokI GGATG 4 cut(s) 353, 380, 500, 630
FriOI GRGCYC 2 cut(s) 324, 600
Fsp4HI GCNGC 6 cut(s) 33, 78, 132, 180, 354, 795
FspBI CTAG 1 cut(s) 233
GlaI GCGC 1 cut(s) 352
GluI GCNGC 6 cut(s) 33, 78, 132, 180, 354, 795
GsaI CCCAGC 1 cut(s) 51
HaeII RGCGCY 1 cut(s) 354
HaeIII GGCC 3 cut(s) 491, 738, 777
HapII CCGG 7 cut(s) 209, 334, 357, 570, 729, 735, 774
HhaI GCGC 1 cut(s) 353
Hin1I GRCGYC 1 cut(s) 351
Hin1II CATG 2 cut(s) 231, 414
Hin6I GCGC 1 cut(s) 351
HinP1I GCGC 1 cut(s) 351
HincII GTYRAC 1 cut(s) 535
HindII GTYRAC 1 cut(s) 535
HpaI GTTAAC 1 cut(s) 535
HpaII CCGG 7 cut(s) 209, 334, 357, 570, 729, 735, 774
HphI GGTGA 3 cut(s) 559, 624, 752
Hpy166II GTNNAC 3 cut(s) 328, 417, 535
Hpy188I TCNGA 1 cut(s) 286
Hpy188III TCNNGA 2 cut(s) 379, 670
Hpy8I GTNNAC 3 cut(s) 328, 417, 535
HpyAV CCTTC 2 cut(s) 254, 417
HpyCH4III ACNGT 1 cut(s) 787
HpyCH4IV ACGT 2 cut(s) 126, 579
HpyCH4V TGCA 2 cut(s) 32, 794
HpyF10VI GCNNNNNNNGC 8 cut(s) 23, 32, 68, 77, 86, 179, 692, 764
HpyF3I CTNAG 1 cut(s) 113
HpySE526I ACGT 2 cut(s) 126, 579
Hsp92I GRCGYC 1 cut(s) 351
Hsp92II CATG 2 cut(s) 231, 414
HspAI GCGC 1 cut(s) 351
KasI GGCGCC 1 cut(s) 350
KpnI GGTACC 1 cut(s) 735
KspAI GTTAAC 1 cut(s) 535
Kzo9I GATC 6 cut(s) 143, 265, 360, 642, 666, 769
LmnI GCTCC 1 cut(s) 240
Lsp1109I GCAGC 4 cut(s) 44, 89, 143, 166
LweI GCATC 1 cut(s) 402
MaeI CTAG 1 cut(s) 233
MaeII ACGT 2 cut(s) 126, 579
MalI GATC 6 cut(s) 145, 267, 362, 644, 668, 771
MboI GATC 6 cut(s) 143, 265, 360, 642, 666, 769
MboII GAAGA 4 cut(s) 33, 355, 541, 652
MflI RGATCY 1 cut(s) 360
MhlI GDGCHC 2 cut(s) 324, 600
MluCI AATT 1 cut(s) 374
Mly113I GGCGCC 1 cut(s) 351
MnlI CCTC 8 cut(s) 99, 231, 234, 487, 492, 527, 648, 761
MseI TTAA 1 cut(s) 534
MslI CAYNNNNRTG 1 cut(s) 616
MspA1I CMGCKG 1 cut(s) 35
MspI CCGG 7 cut(s) 209, 334, 357, 570, 729, 735, 774
MspR9I CCNGG 8 cut(s) 209, 210, 249, 358, 525, 571, 591, 774
MvaI CCWGG 3 cut(s) 249, 525, 591
MwoI GCNNNNNNNGC 8 cut(s) 23, 32, 68, 77, 86, 179, 692, 764
NarI GGCGCC 1 cut(s) 351
NciI CCSGG 5 cut(s) 209, 210, 358, 571, 774
NcoI CCATGG 1 cut(s) 227
NdeII GATC 6 cut(s) 143, 265, 360, 642, 666, 769
NlaIII CATG 2 cut(s) 231, 414
NlaIV GGNNCC 5 cut(s) 206, 242, 352, 733, 739
NmeAIII GCCGAG 2 cut(s) 343, 517
PcsI WCGNNNNNNNCGW 1 cut(s) 489
PfoI TCCNGGA 1 cut(s) 247
PinAI ACCGGT 1 cut(s) 728
PkrI GCNGC 6 cut(s) 34, 79, 133, 181, 355, 796
PluTI GGCGCC 1 cut(s) 354
Psp124BI GAGCTC 1 cut(s) 324
Psp6I CCWGG 3 cut(s) 247, 523, 589
PspFI CCCAGC 1 cut(s) 47
PspGI CCWGG 3 cut(s) 247, 523, 589
PspN4I GGNNCC 5 cut(s) 206, 242, 352, 733, 739
PspPI GGNCC 2 cut(s) 489, 737
PsuI RGATCY 1 cut(s) 360
PvuII CAGCTG 1 cut(s) 35
RsaI GTAC 4 cut(s) 327, 416, 437, 733
RsaNI GTAC 4 cut(s) 326, 415, 436, 732
RseI CAYNNNNRTG 1 cut(s) 616
SacI GAGCTC 1 cut(s) 324
SaqAI TTAA 1 cut(s) 534
SatI GCNGC 6 cut(s) 33, 78, 132, 180, 354, 795
Sau3AI GATC 6 cut(s) 143, 265, 360, 642, 666, 769
Sau96I GGNCC 2 cut(s) 489, 737
ScaI AGTACT 1 cut(s) 437
ScrFI CCNGG 8 cut(s) 209, 210, 249, 358, 525, 571, 591, 774
SduI GDGCHC 2 cut(s) 324, 600
SfaNI GCATC 1 cut(s) 402
SfoI GGCGCC 1 cut(s) 352
SmaI CCCGGG 1 cut(s) 210
SmiMI CAYNNNNRTG 1 cut(s) 616
SmlI CTYRAG 1 cut(s) 518
SmoI CTYRAG 1 cut(s) 518
Sse9I AATT 1 cut(s) 374
SsiI CCGC 5 cut(s) 62, 102, 269, 354, 594
SspDI GGCGCC 1 cut(s) 350
SspMI CTAG 1 cut(s) 233
SstI GAGCTC 1 cut(s) 324
StyD4I CCNGG 8 cut(s) 207, 208, 247, 356, 523, 569, 589, 772
StyI CCWWGG 1 cut(s) 227
TaaI ACNGT 1 cut(s) 787
TaiI ACGT 2 cut(s) 129, 582
TaqI TCGA 1 cut(s) 606
TasI AATT 1 cut(s) 374
TatI WGTACW 1 cut(s) 435
TauI GCSGC 1 cut(s) 356
Tru1I TTAA 1 cut(s) 534
Tru9I TTAA 1 cut(s) 534
TscAI CASTG 3 cut(s) 335, 448, 790
TseI GCWGC 5 cut(s) 32, 77, 131, 179, 794
TspDTI ATGAA 6 cut(s) 9, 270, 355, 399, 451, 469
TspMI CCCGGG 1 cut(s) 208
TspRI CASTG 3 cut(s) 335, 448, 790
XapI RAATTY 1 cut(s) 374
XcmI CCANNNNNNNNNTGG 1 cut(s) 597
XmaI CCCGGG 1 cut(s) 208
XspI CTAG 1 cut(s) 233
ZrmI AGTACT 1 cut(s) 437
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.