Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0001008

Physical Location & Seq

Genomic Coordinates Reverse (-)

2965354 .. 2966106

Gene Structure 753 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g04340.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGGCGCCTGCAGAACTCTCCAACGGTCCTTTTCTCCTTTCTCTGTGTATGTTTTGTCTAGTCATAACACCAAGTGCAGGTTTTAACATTTGGGGTTCTGCAGAGAAAAAAAAGGATGCCCAATATTGGCTAAACCACGGCGGAGACTTGTACAACCGAAGATATGCCAACAGGGAGAAGAAGATAAGCCCTGCGACAGTTTCCAATCTCAGTTTGAAGTGGAAATTCTATGCAGGTGGTGACATAACTGTAACACCAGCCATTTTCGACGGCACACTCTACTTCCCCAGCTGGAATGGATACCTCTACGCTGTTAAGGCCTCCGACGGATCCCTTGTTTGGAAGAAGAATGTGCAGAAGCTGACTGGCTTTAACAACACCGGTTTCATACTCAATGTCAACTCTACAGTAACAAGATCGACCCCAACTGTCGCCGGCGATCTGCTCATTTGTGGAATCTATGGACCTGCTTTTGTTATTGCAGTCAAAAGGTCGAACGGGAAGCTTGTCTGGTCTACCAGGCTTGACAACCACACTAGAGCTTTCATCACCATGTCTGGAACCTATTACAAAGGGTTAGTCAAACTTAATCTACCTAACCCTTTTTTTTTCATTAGTTCTCTATATCAGTCTCGGACTCGTTTGTCAGTATTTTTAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PQQ PQQ_2 PQQ_3

Protein Analysis

221

Amino Acids

24.51

Weight (kDa)

9.75

Isoelectric Point (pI)

37.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001008)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g31710 FvH4_4g31710 FvH4_6g49090 FvH4_6g49090 FvH4_6g49090 FvH4_6g49090 FvH4_6g49090 FvH4_6g49110 FvH4_6g49111
malus_domestica	MD09G1048500.v1.1 MD09G1048700.v1.1 MD13G1077000.v1.1 MD17G1048600.v1.1
prunus_persica	Prupe.1G270000_v2.0.a1 Prupe.3G270300_v2.0.a1 Prupe.3G270400_v2.0.a1 Prupe.3G270500_v2.0.a1 Prupe.3G270600_v2.0.a1
pyrus_communis	pycom13g06710 pycom17g04320 pycom17g04340
rosa_chinensis	RchiOBHm_Chr2g0168951 RchiOBHm_Chr2g0168981 RchiOBHm_Chr2g0168991 RchiOBHm_Chr4g0440311
rosa_laevigata	RLG00000006193 RLG00000021816 RLG00000021819 RLG00000021820 RLG00000021821
rosa_multiflora	Rmu_co8508477.1_g000001 Rmu_co8508477.1_g000002 Rmu_co8508477.1_g000003 Rmu_sc0001685.1_g000040 Rmu_ssc0000393.1_g000016 Rmu_ssc0000393.1_g000019 Rmu_ssc0000393.1_g000020
rosa_roxburghii	Rroxscaffold_2G00082560 Rroxscaffold_2G00082570 Rroxscaffold_5G00381190
rosa_rugosa	Rorug02G0536200 Rorug02G0536300.1 Rorug02G0536400 Rorug02G0536400 Rorug04G0325500
rosa_samantha	Rh2AG607300 Rh2AG607500 Rh2BG620000 Rh2CG588600 Rh2CG588700 Rh2CG588900 Rh2CG589000 Rh2DG630700 Rh2DG630800 Rh4AG376400 Rh4BG389400 Rh4CG404200 Rh4DG383100
rosa_wichuraiana	Rw2G050350 Rw2G050360 Rw2G050370 Rw4G032220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	224
AasI	GACNNNNNNGTC	1 cut(s)	643
Acc36I	ACCTGC	3 cut(s)	68, 224, 475
AccB1I	GGYRCC	1 cut(s)	4
AccI	GTMKAC	1 cut(s)	515
AciI	CCGC	1 cut(s)	141
AclWI	GGATC	2 cut(s)	324, 337
AcsI	RAATTY	1 cut(s)	224
AcyI	GRCGYC	1 cut(s)	5
AdeI	CACNNNGTG	1 cut(s)	74
AfaI	GTAC	1 cut(s)	152
AfiI	CCNNNNNNNGG	3 cut(s)	77, 126, 339
AgeI	ACCGGT	1 cut(s)	380
AgsI	TTSAA	1 cut(s)	217
AjnI	CCWGG	1 cut(s)	518
AluBI	AGCT	4 cut(s)	291, 361, 505, 542
AluI	AGCT	4 cut(s)	291, 361, 505, 542
Alw26I	GTCTC	2 cut(s)	138, 636
AlwI	GGATC	2 cut(s)	324, 337
AlwNI	CAGNNNCTG	1 cut(s)	361
AoxI	GGCC	1 cut(s)	318
ApoI	RAATTY	1 cut(s)	224
ArsI	GACNNNNNNTTYG	2 cut(s)	564, 596
AsiGI	ACCGGT	1 cut(s)	380
AspLEI	GCGC	1 cut(s)	7
AspS9I	GGNCC	2 cut(s)	26, 464
AsuHPI	GGTGA	2 cut(s)	251, 541
AvaII	GGWCC	2 cut(s)	26, 464
BamHI	GGATCC	1 cut(s)	329
BanI	GGYRCC	1 cut(s)	4
BceAI	ACGGC	2 cut(s)	154, 286
BciT130I	CCWGG	1 cut(s)	520
BciVI	GTATCC	1 cut(s)	293
BcoDI	GTCTC	2 cut(s)	138, 636
BfaI	CTAG	2 cut(s)	59, 537
BfmI	CTRYAG	3 cut(s)	9, 99, 405
BfoI	RGCGCY	1 cut(s)	8
BfuAI	ACCTGC	3 cut(s)	68, 224, 475
BfuI	GTATCC	1 cut(s)	293
Bme1390I	CCNGG	1 cut(s)	520
Bme18I	GGWCC	2 cut(s)	26, 464
BmgT120I	GGNCC	2 cut(s)	26, 464
BmiI	GGNNCC	3 cut(s)	6, 331, 562
BmrFI	CCNGG	1 cut(s)	520
BmsI	GCATC	1 cut(s)	106
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	1 cut(s)	136
BsaWI	WCCGGW	1 cut(s)	380
Bsc4I	CCNNNNNNNGG	3 cut(s)	77, 126, 339
Bse118I	RCCGGY	2 cut(s)	380, 434
Bse1I	ACTGG	1 cut(s)	370
BseBI	CCWGG	1 cut(s)	520
BseDI	CCNNGG	1 cut(s)	136
BseGI	GGATG	1 cut(s)	121
BseLI	CCNNNNNNNGG	3 cut(s)	77, 126, 339
BseMII	CTCAG	1 cut(s)	223
BseNI	ACTGG	1 cut(s)	370
BseYI	CCCAGC	1 cut(s)	287
BsgI	GTGCAG	2 cut(s)	96, 374
BshFI	GGCC	1 cut(s)	320
BshNI	GGYRCC	1 cut(s)	4
BshTI	ACCGGT	1 cut(s)	380
BsiSI	CCGG	2 cut(s)	381, 435
BslI	CCNNNNNNNGG	3 cut(s)	77, 126, 339
BsmAI	GTCTC	2 cut(s)	138, 636
BsnI	GGCC	1 cut(s)	320
Bsp1407I	TGTACA	1 cut(s)	150
Bsp143I	GATC	3 cut(s)	329, 416, 439
BspACI	CCGC	1 cut(s)	141
BspANI	GGCC	1 cut(s)	320
BspCNI	CTCAG	1 cut(s)	222
BspLI	GGNNCC	3 cut(s)	6, 331, 562
BspMAI	CTGCAG	2 cut(s)	13, 103
BspMI	ACCTGC	3 cut(s)	68, 224, 475
BspPI	GGATC	2 cut(s)	324, 337
BspT107I	GGYRCC	1 cut(s)	4
BsrFI	RCCGGY	2 cut(s)	380, 434
BsrGI	TGTACA	1 cut(s)	150
BsrI	ACTGG	1 cut(s)	370
BssAI	RCCGGY	2 cut(s)	380, 434
BssECI	CCNNGG	1 cut(s)	136
BssMI	GATC	3 cut(s)	329, 416, 439
BssNI	GRCGYC	1 cut(s)	5
Bst2UI	CCWGG	1 cut(s)	520
Bst4CI	ACNGT	5 cut(s)	26, 199, 250, 409, 430
BstACI	GRCGYC	1 cut(s)	5
BstAUI	TGTACA	1 cut(s)	150
BstC8I	GCNNGC	2 cut(s)	9, 436
BstDEI	CTNAG	1 cut(s)	209
BstDSI	CCRYGG	1 cut(s)	136
BstF5I	GGATG	1 cut(s)	121
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	3 cut(s)	332, 419, 442
BstMAI	GTCTC	2 cut(s)	138, 636
BstMBI	GATC	3 cut(s)	329, 416, 439
BstMWI	GCNNNNNNNGC	1 cut(s)	317
BstNI	CCWGG	1 cut(s)	520
BstSCI	CCNGG	1 cut(s)	518
BstSFI	CTRYAG	3 cut(s)	9, 99, 405
BstX2I	RGATCY	1 cut(s)	329
BstYI	RGATCY	1 cut(s)	329
BsuI	GTATCC	1 cut(s)	293
BsuRI	GGCC	1 cut(s)	320
BtgI	CCRYGG	1 cut(s)	136
BtsCI	GGATG	1 cut(s)	121
BveI	ACCTGC	3 cut(s)	68, 224, 475
Cac8I	GCNNGC	2 cut(s)	9, 436
CaiI	CAGNNNCTG	1 cut(s)	361
CfoI	GCGC	1 cut(s)	7
Cfr10I	RCCGGY	2 cut(s)	380, 434
Cfr13I	GGNCC	2 cut(s)	26, 464
Csp6I	GTAC	1 cut(s)	151
CspAI	ACCGGT	1 cut(s)	380
CviAII	CATG	1 cut(s)	553
CviQI	GTAC	1 cut(s)	151
DdeI	CTNAG	1 cut(s)	209
DinI	GGCGCC	1 cut(s)	6
DpnI	GATC	3 cut(s)	331, 418, 441
DpnII	GATC	3 cut(s)	329, 416, 439
DraIII	CACNNNGTG	1 cut(s)	74
DrdI	GACNNNNNNGTC	1 cut(s)	643
DseDI	GACNNNNNNGTC	1 cut(s)	643
EciI	GGCGGA	1 cut(s)	156
Eco147I	AGGCCT	1 cut(s)	320
Eco47I	GGWCC	2 cut(s)	26, 464
EcoRII	CCWGG	1 cut(s)	518
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
FaeI	CATG	1 cut(s)	556
FaiI	YATR	9 cut(s)	50, 65, 165, 231, 245, 389, 462, 554, 625
FatI	CATG	1 cut(s)	552
FblI	GTMKAC	1 cut(s)	515
FokI	GGATG	1 cut(s)	128
FspBI	CTAG	2 cut(s)	59, 537
GlaI	GCGC	1 cut(s)	6
GsaI	CCCAGC	1 cut(s)	291
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	1 cut(s)	320
HapII	CCGG	2 cut(s)	381, 435
HhaI	GCGC	1 cut(s)	7
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	556
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HincII	GTYRAC	1 cut(s)	400
HindII	GTYRAC	1 cut(s)	400
HindIII	AAGCTT	1 cut(s)	503
HinfI	GANTC	2 cut(s)	456, 637
HpaII	CCGG	2 cut(s)	381, 435
HphI	GGTGA	2 cut(s)	251, 541
Hpy166II	GTNNAC	2 cut(s)	400, 516
Hpy188I	TCNGA	2 cut(s)	325, 636
Hpy188III	TCNNGA	1 cut(s)	558
Hpy8I	GTNNAC	2 cut(s)	400, 516
Hpy99I	CGWCG	2 cut(s)	272, 329
HpyCH4III	ACNGT	5 cut(s)	26, 199, 250, 409, 430
HpyCH4V	TGCA	6 cut(s)	11, 77, 101, 233, 355, 482
HpyF10VI	GCNNNNNNNGC	1 cut(s)	317
HpyF3I	CTNAG	1 cut(s)	209
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	1 cut(s)	556
HspAI	GCGC	1 cut(s)	5
KasI	GGCGCC	1 cut(s)	4
KroI	GCCGGC	1 cut(s)	434
KroNI	GCCGGC	1 cut(s)	436
Kzo9I	GATC	3 cut(s)	329, 416, 439
LweI	GCATC	1 cut(s)	106
MaeI	CTAG	2 cut(s)	59, 537
MaeIII	GTNAC	3 cut(s)	239, 250, 409
MalI	GATC	3 cut(s)	331, 418, 441
MboI	GATC	3 cut(s)	329, 416, 439
MboII	GAAGA	5 cut(s)	171, 190, 193, 355, 358
MflI	RGATCY	1 cut(s)	329
MluCI	AATT	1 cut(s)	224
Mly113I	GGCGCC	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	631
MmeI	TCCRAC	2 cut(s)	45, 348
MnlI	CCTC	2 cut(s)	314, 331
MreI	CGCCGGCG	1 cut(s)	434
MroNI	GCCGGC	1 cut(s)	434
MseI	TTAA	4 cut(s)	84, 315, 372, 588
MslI	CAYNNNNRTG	1 cut(s)	551
MspA1I	CMGCKG	1 cut(s)	291
MspI	CCGG	2 cut(s)	381, 435
MspR9I	CCNGG	1 cut(s)	520
MvaI	CCWGG	1 cut(s)	520
MwoI	GCNNNNNNNGC	1 cut(s)	317
NaeI	GCCGGC	1 cut(s)	436
NarI	GGCGCC	1 cut(s)	5
NdeII	GATC	3 cut(s)	329, 416, 439
NgoMIV	GCCGGC	1 cut(s)	434
NlaIII	CATG	1 cut(s)	556
NlaIV	GGNNCC	3 cut(s)	6, 331, 562
NmuCI	GTSAC	1 cut(s)	239
PaqCI	CACCTGC	1 cut(s)	224
PceI	AGGCCT	1 cut(s)	320
PdiI	GCCGGC	1 cut(s)	436
PfeI	GAWTC	1 cut(s)	456
PinAI	ACCGGT	1 cut(s)	380
PleI	GAGTC	1 cut(s)	631
PluTI	GGCGCC	1 cut(s)	8
PpsI	GAGTC	1 cut(s)	631
Psp6I	CCWGG	1 cut(s)	518
PspFI	CCCAGC	1 cut(s)	287
PspGI	CCWGG	1 cut(s)	518
PspN4I	GGNNCC	3 cut(s)	6, 331, 562
PspPI	GGNCC	2 cut(s)	26, 464
PstI	CTGCAG	2 cut(s)	13, 103
PstNI	CAGNNNCTG	1 cut(s)	361
PsuI	RGATCY	1 cut(s)	329
PvuII	CAGCTG	1 cut(s)	291
RsaI	GTAC	1 cut(s)	152
RsaNI	GTAC	1 cut(s)	151
RseI	CAYNNNNRTG	1 cut(s)	551
SaqAI	TTAA	4 cut(s)	84, 315, 372, 588
Sau3AI	GATC	3 cut(s)	329, 416, 439
Sau96I	GGNCC	2 cut(s)	26, 464
SchI	GAGTC	1 cut(s)	631
ScrFI	CCNGG	1 cut(s)	520
SfaNI	GCATC	1 cut(s)	106
SfcI	CTRYAG	3 cut(s)	9, 99, 405
SfoI	GGCGCC	1 cut(s)	6
SgrAI	CRCCGGYG	1 cut(s)	434
SinI	GGWCC	2 cut(s)	26, 464
SmiMI	CAYNNNNRTG	1 cut(s)	551
Sse9I	AATT	1 cut(s)	224
SseBI	AGGCCT	1 cut(s)	320
SsiI	CCGC	1 cut(s)	141
SspDI	GGCGCC	1 cut(s)	4
SspI	AATATT	1 cut(s)	125
SspMI	CTAG	2 cut(s)	59, 537
StuI	AGGCCT	1 cut(s)	320
StyD4I	CCNGG	1 cut(s)	518
TaaI	ACNGT	5 cut(s)	26, 199, 250, 409, 430
TaqI	TCGA	3 cut(s)	267, 419, 494
TasI	AATT	1 cut(s)	224
TatI	WGTACW	1 cut(s)	150
TfiI	GAWTC	1 cut(s)	456
Tru1I	TTAA	4 cut(s)	84, 315, 372, 588
Tru9I	TTAA	4 cut(s)	84, 315, 372, 588
TseFI	GTSAC	1 cut(s)	239
Tsp45I	GTSAC	1 cut(s)	239
TspDTI	ATGAA	3 cut(s)	376, 535, 601
TspGWI	ACGGA	1 cut(s)	342
VpaK11BI	GGWCC	2 cut(s)	26, 464
XapI	RAATTY	1 cut(s)	224
XmiI	GTMKAC	1 cut(s)	515
XspI	CTAG	2 cut(s)	59, 537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.