Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0001008

Physical Location & Seq

Genomic Coordinates Reverse (-)

3181720 .. 3183234

Gene Structure 1515 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1048500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGGCACTGCCCGATAATCATGAAACCACCGGACTATATTCCGGGGCAGCTATTTGGGGCAGTAGTCCATCCATCGATGTTCATAGGAGACATGTGTACATTGCTAATGGGAATGTGTACTCAGTCCCTGAAAATGTAAGCCAATGCCAAGAAAATCAGAACAATTCAACAGTACCCACTCGTCCAGATGCGTGCGTCGAGCCCGAAAATCACGGCAACTCAATCCTAGCCCTTGATTTGGATGGTGGCGATATCAAGTGGTACCACCAGCTGGGCGGTTACGATGTATGGTTTGTTGCCTGTTTACTTGATCCTTCAACCTGCCCCACTGGACCAAATATTGATGCTGATTTTGGAGAGATGCTCAGAACTTATGTGAATGGAACCAAGCGTGATATAGTTGTTGCTGTGCAGAAAAGTGGGTTTGCATGGGCTTTGGATCGGAATAATGGCAGCCTTGTGTGGTCTACGGAAGCCGGGCCGGGTGGCATTCGCGGAGGAGGAACTTGGGGAGCAGCTACTGACAATAAAATAGTCTACACTAACATTGCAAATTCTGATGGCAAAAACTTCACTCTTAAGCCATCTAACAACATAACAACTGCGGGTGGATGGGTGGCAATAGATCCTCGCACCGGTAGAACTCTATGGTCAACTGCTGATCCTAGCAATGCAACTTCTTCTGGGCCAGTTAGTGTGGCTAATGGTGTTTTATTTACTGGATCCACAAATCAAACAGGACCAATATACGCGATTGACACCGAAAATGGAGAAACTTTGTGGTCATATGACACCGGAGCAACCGTGTACGGTGGCTTATCAATAAGTAATGGGTGCATTTACGTTGGCAATGGATATGCAGTTAATATTGGATCCTTTTCCCCATTTAACCCTGGAACCTCACTCTATGCCTTTTGTATTACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PQQ PQQ_2 PQQ_3

Protein Analysis

309

Amino Acids

32.58

Weight (kDa)

4.65

Isoelectric Point (pI)

29.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PQQ	PF01011	69 - 158	1.6e-06	Glucose/ethanol/alcohol dehydrogenase, beta-propeller domain
PQQ_2	PF13360	204 - 282	1.1e-10	Outer membrane protein assembly factor BamB

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001008)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g31710 FvH4_4g31710 FvH4_6g49090 FvH4_6g49090 FvH4_6g49090 FvH4_6g49090 FvH4_6g49090 FvH4_6g49110 FvH4_6g49111
malus_domestica	MD09G1048500.v1.1 MD09G1048700.v1.1 MD13G1077000.v1.1 MD17G1048600.v1.1
prunus_persica	Prupe.1G270000_v2.0.a1 Prupe.3G270300_v2.0.a1 Prupe.3G270400_v2.0.a1 Prupe.3G270500_v2.0.a1 Prupe.3G270600_v2.0.a1
pyrus_communis	pycom13g06710 pycom17g04320 pycom17g04340
rosa_chinensis	RchiOBHm_Chr2g0168951 RchiOBHm_Chr2g0168981 RchiOBHm_Chr2g0168991 RchiOBHm_Chr4g0440311
rosa_laevigata	RLG00000006193 RLG00000021816 RLG00000021819 RLG00000021820 RLG00000021821
rosa_multiflora	Rmu_co8508477.1_g000001 Rmu_co8508477.1_g000002 Rmu_co8508477.1_g000003 Rmu_sc0001685.1_g000040 Rmu_ssc0000393.1_g000016 Rmu_ssc0000393.1_g000019 Rmu_ssc0000393.1_g000020
rosa_roxburghii	Rroxscaffold_2G00082560 Rroxscaffold_2G00082570 Rroxscaffold_5G00381190
rosa_rugosa	Rorug02G0536200 Rorug02G0536300.1 Rorug02G0536400 Rorug02G0536400 Rorug04G0325500
rosa_samantha	Rh2AG607300 Rh2AG607500 Rh2BG620000 Rh2CG588600 Rh2CG588700 Rh2CG588900 Rh2CG589000 Rh2DG630700 Rh2DG630800 Rh4AG376400 Rh4BG389400 Rh4CG404200 Rh4DG383100
rosa_wichuraiana	Rw2G050350 Rw2G050360 Rw2G050370 Rw4G032220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	329
Acc65I	GGTACC	1 cut(s)	261
AccB1I	GGYRCC	1 cut(s)	261
AccB7I	CCANNNNNTGG	1 cut(s)	271
AccI	GTMKAC	2 cut(s)	467, 537
AccII	CGCG	2 cut(s)	495, 752
AciI	CCGC	3 cut(s)	276, 495, 605
AclWI	GGATC	8 cut(s)	305, 447, 620, 656, 717, 730, 867, 880
AcsI	RAATTY	1 cut(s)	553
AfaI	GTAC	5 cut(s)	98, 119, 174, 263, 809
AfiI	CCNNNNNNNGG	3 cut(s)	238, 271, 635
AflII	CTTAAG	1 cut(s)	578
AflIII	ACRYGT	1 cut(s)	91
AgeI	ACCGGT	1 cut(s)	635
AgsI	TTSAA	2 cut(s)	168, 318
AjnI	CCWGG	1 cut(s)	892
AluBI	AGCT	3 cut(s)	50, 271, 518
AluI	AGCT	3 cut(s)	50, 271, 518
Alw26I	GTCTC	1 cut(s)	82
AlwI	GGATC	8 cut(s)	305, 447, 620, 656, 717, 730, 867, 880
AlwNI	CAGNNNCTG	2 cut(s)	128, 521
AoxI	GGCC	2 cut(s)	479, 686
ApeKI	GCWGC	3 cut(s)	47, 453, 515
ApoI	RAATTY	1 cut(s)	553
AsiGI	ACCGGT	1 cut(s)	635
Asp718I	GGTACC	1 cut(s)	261
AspS9I	GGNCC	4 cut(s)	332, 479, 686, 740
AsuC2I	CCSGG	3 cut(s)	43, 478, 483
AvaII	GGWCC	2 cut(s)	332, 740
BamHI	GGATCC	2 cut(s)	722, 872
BanI	GGYRCC	1 cut(s)	261
BanII	GRGCYC	1 cut(s)	204
BbvI	GCAGC	3 cut(s)	59, 465, 527
BccI	CCATC	6 cut(s)	76, 80, 236, 554, 592, 606
BceAI	ACGGC	1 cut(s)	229
BciT130I	CCWGG	1 cut(s)	894
BcnI	CCSGG	3 cut(s)	43, 478, 483
BcoDI	GTCTC	1 cut(s)	82
BfaI	CTAG	2 cut(s)	227, 666
BfrI	CTTAAG	1 cut(s)	578
BfuAI	ACCTGC	1 cut(s)	329
BisI	GCNGC	3 cut(s)	48, 454, 516
BlsI	GCNGC	3 cut(s)	49, 455, 517
Bme1390I	CCNGG	4 cut(s)	43, 478, 483, 894
Bme18I	GGWCC	2 cut(s)	332, 740
BmgT120I	GGNCC	4 cut(s)	332, 479, 686, 740
BmiI	GGNNCC	5 cut(s)	263, 385, 724, 874, 898
BmrFI	CCNGG	4 cut(s)	43, 478, 483, 894
BmsI	GCATC	3 cut(s)	178, 334, 351
BplI	GAGNNNNNCTC	2 cut(s)	348, 380
BpuMI	CCSGG	3 cut(s)	43, 478, 483
Bsa29I	ATCGAT	1 cut(s)	75
BsaJI	CCNNGG	2 cut(s)	42, 892
BsaWI	WCCGGW	3 cut(s)	29, 635, 794
BsaXI	ACNNNNNCTCC	2 cut(s)	789, 819
Bsc4I	CCNNNNNNNGG	3 cut(s)	238, 271, 635
Bse118I	RCCGGY	1 cut(s)	635
Bse1I	ACTGG	3 cut(s)	334, 689, 724
Bse3DI	GCAATG	4 cut(s)	99, 546, 676, 856
BseBI	CCWGG	1 cut(s)	894
BseCI	ATCGAT	1 cut(s)	75
BseDI	CCNNGG	2 cut(s)	42, 892
BseGI	GGATG	3 cut(s)	68, 247, 617
BseLI	CCNNNNNNNGG	3 cut(s)	238, 271, 635
BseMI	GCAATG	4 cut(s)	99, 546, 676, 856
BseMII	CTCAG	2 cut(s)	135, 379
BseNI	ACTGG	3 cut(s)	334, 689, 724
BseRI	GAGGAG	1 cut(s)	513
BseXI	GCAGC	3 cut(s)	59, 465, 527
BseYI	CCCAGC	1 cut(s)	271
BsgI	GTGCAG	1 cut(s)	431
Bsh1236I	CGCG	2 cut(s)	495, 752
BshFI	GGCC	2 cut(s)	481, 688
BshNI	GGYRCC	1 cut(s)	261
BshTI	ACCGGT	1 cut(s)	635
BshVI	ATCGAT	1 cut(s)	75
BsiSI	CCGG	6 cut(s)	30, 42, 477, 482, 636, 795
BslFI	GGGAC	1 cut(s)	110
BslI	CCNNNNNNNGG	3 cut(s)	238, 271, 635
BsmAI	GTCTC	1 cut(s)	82
BsmFI	GGGAC	1 cut(s)	110
BsmI	GAATGC	1 cut(s)	489
BsnI	GGCC	2 cut(s)	481, 688
Bsp1286I	GDGCHC	1 cut(s)	204
Bsp1407I	TGTACA	1 cut(s)	96
Bsp143I	GATC	6 cut(s)	310, 439, 625, 661, 722, 872
BspACI	CCGC	3 cut(s)	276, 495, 605
BspANI	GGCC	2 cut(s)	481, 688
BspCNI	CTCAG	2 cut(s)	134, 378
BspDI	ATCGAT	1 cut(s)	75
BspFNI	CGCG	2 cut(s)	495, 752
BspHI	TCATGA	1 cut(s)	19
BspLI	GGNNCC	5 cut(s)	263, 385, 724, 874, 898
BspMI	ACCTGC	1 cut(s)	329
BspPI	GGATC	8 cut(s)	305, 447, 620, 656, 717, 730, 867, 880
BspT107I	GGYRCC	1 cut(s)	261
BspTI	CTTAAG	1 cut(s)	578
BsrDI	GCAATG	4 cut(s)	99, 546, 676, 856
BsrFI	RCCGGY	1 cut(s)	635
BsrGI	TGTACA	1 cut(s)	96
BsrI	ACTGG	3 cut(s)	334, 689, 724
BssAI	RCCGGY	1 cut(s)	635
BssECI	CCNNGG	2 cut(s)	42, 892
BssMI	GATC	6 cut(s)	310, 439, 625, 661, 722, 872
Bst2UI	CCWGG	1 cut(s)	894
Bst4CI	ACNGT	3 cut(s)	172, 805, 812
BstAFI	CTTAAG	1 cut(s)	578
BstAUI	TGTACA	1 cut(s)	96
BstC8I	GCNNGC	1 cut(s)	193
BstDEI	CTNAG	2 cut(s)	121, 365
BstF5I	GGATG	3 cut(s)	68, 247, 617
BstFNI	CGCG	2 cut(s)	495, 752
BstKTI	GATC	6 cut(s)	313, 442, 628, 664, 725, 875
BstMAI	GTCTC	1 cut(s)	82
BstMBI	GATC	6 cut(s)	310, 439, 625, 661, 722, 872
BstNI	CCWGG	1 cut(s)	894
BstNSI	RCATGY	1 cut(s)	95
BstSCI	CCNGG	4 cut(s)	41, 476, 481, 892
BstUI	CGCG	2 cut(s)	495, 752
BstV1I	GCAGC	3 cut(s)	59, 465, 527
BstX2I	RGATCY	3 cut(s)	625, 722, 872
BstYI	RGATCY	3 cut(s)	625, 722, 872
Bsu15I	ATCGAT	1 cut(s)	75
BsuRI	GGCC	2 cut(s)	481, 688
BsuTUI	ATCGAT	1 cut(s)	75
BtsCI	GGATG	3 cut(s)	68, 247, 617
BtsI	GCAGTG	1 cut(s)	5
BtsIMutI	CAGTG	2 cut(s)	5, 327
BveI	ACCTGC	1 cut(s)	329
Cac8I	GCNNGC	1 cut(s)	193
CaiI	CAGNNNCTG	2 cut(s)	128, 521
CciI	TCATGA	1 cut(s)	19
Cfr10I	RCCGGY	1 cut(s)	635
Cfr13I	GGNCC	4 cut(s)	332, 479, 686, 740
ClaI	ATCGAT	1 cut(s)	75
CseI	GACGC	1 cut(s)	184
Csp6I	GTAC	5 cut(s)	97, 118, 173, 262, 808
CspAI	ACCGGT	1 cut(s)	635
CviAII	CATG	4 cut(s)	20, 92, 429, 924
CviQI	GTAC	5 cut(s)	97, 118, 173, 262, 808
DdeI	CTNAG	2 cut(s)	121, 365
DpnI	GATC	6 cut(s)	312, 441, 627, 663, 724, 874
DpnII	GATC	6 cut(s)	310, 439, 625, 661, 722, 872
Eco24I	GRGCYC	1 cut(s)	204
Eco32I	GATATC	1 cut(s)	253
Eco47I	GGWCC	2 cut(s)	332, 740
EcoRII	CCWGG	1 cut(s)	892
EcoRV	GATATC	1 cut(s)	253
EcoT38I	GRGCYC	1 cut(s)	204
FaeI	CATG	4 cut(s)	23, 95, 432, 927
FaqI	GGGAC	1 cut(s)	110
FatI	CATG	4 cut(s)	19, 91, 428, 923
FauI	CCCGC	1 cut(s)	598
FauNDI	CATATG	1 cut(s)	787
FblI	GTMKAC	2 cut(s)	467, 537
Fnu4HI	GCNGC	3 cut(s)	48, 454, 516
FokI	GGATG	3 cut(s)	55, 254, 624
FriOI	GRGCYC	1 cut(s)	204
Fsp4HI	GCNGC	3 cut(s)	48, 454, 516
FspBI	CTAG	2 cut(s)	227, 666
GluI	GCNGC	3 cut(s)	48, 454, 516
GsaI	CCCAGC	1 cut(s)	275
HaeIII	GGCC	2 cut(s)	481, 688
HapII	CCGG	6 cut(s)	30, 42, 477, 482, 636, 795
HgaI	GACGC	1 cut(s)	184
Hin1II	CATG	4 cut(s)	23, 95, 432, 927
HincII	GTYRAC	1 cut(s)	654
HindII	GTYRAC	1 cut(s)	654
HpaII	CCGG	6 cut(s)	30, 42, 477, 482, 636, 795
Hpy166II	GTNNAC	7 cut(s)	97, 118, 305, 468, 538, 654, 808
Hpy188I	TCNGA	4 cut(s)	159, 368, 444, 559
Hpy188III	TCNNGA	2 cut(s)	20, 185
Hpy8I	GTNNAC	7 cut(s)	97, 118, 305, 468, 538, 654, 808
Hpy99I	CGWCG	1 cut(s)	200
HpyAV	CCTTC	1 cut(s)	324
HpyCH4III	ACNGT	3 cut(s)	172, 805, 812
HpyCH4IV	ACGT	1 cut(s)	843
HpyCH4V	TGCA	6 cut(s)	412, 428, 551, 674, 837, 860
HpyF3I	CTNAG	2 cut(s)	121, 365
HpySE526I	ACGT	1 cut(s)	843
Hsp92II	CATG	4 cut(s)	23, 95, 432, 927
KpnI	GGTACC	1 cut(s)	265
Kzo9I	GATC	6 cut(s)	310, 439, 625, 661, 722, 872
LmnI	GCTCC	2 cut(s)	512, 797
Lsp1109I	GCAGC	3 cut(s)	59, 465, 527
LweI	GCATC	3 cut(s)	178, 334, 351
MaeI	CTAG	2 cut(s)	227, 666
MaeII	ACGT	1 cut(s)	843
MaeIII	GTNAC	1 cut(s)	278
MalI	GATC	6 cut(s)	312, 441, 627, 663, 724, 874
MboI	GATC	6 cut(s)	310, 439, 625, 661, 722, 872
MboII	GAAGA	1 cut(s)	672
MflI	RGATCY	3 cut(s)	625, 722, 872
MhlI	GDGCHC	1 cut(s)	204
MluCI	AATT	2 cut(s)	163, 553
MnlI	CCTC	4 cut(s)	491, 494, 639, 910
MseI	TTAA	3 cut(s)	579, 864, 888
MspA1I	CMGCKG	1 cut(s)	271
MspCI	CTTAAG	1 cut(s)	578
MspI	CCGG	6 cut(s)	30, 42, 477, 482, 636, 795
MspR9I	CCNGG	4 cut(s)	43, 478, 483, 894
Mva1269I	GAATGC	1 cut(s)	489
MvaI	CCWGG	1 cut(s)	894
MvnI	CGCG	2 cut(s)	495, 752
NciI	CCSGG	3 cut(s)	43, 478, 483
NdeI	CATATG	1 cut(s)	787
NdeII	GATC	6 cut(s)	310, 439, 625, 661, 722, 872
NlaIII	CATG	4 cut(s)	23, 95, 432, 927
NlaIV	GGNNCC	5 cut(s)	263, 385, 724, 874, 898
NspI	RCATGY	1 cut(s)	95
PagI	TCATGA	1 cut(s)	19
PciI	ACATGT	1 cut(s)	91
PctI	GAATGC	1 cut(s)	489
PflMI	CCANNNNNTGG	1 cut(s)	271
PinAI	ACCGGT	1 cut(s)	635
PkrI	GCNGC	3 cut(s)	49, 455, 517
PscI	ACATGT	1 cut(s)	91
Psp6I	CCWGG	1 cut(s)	892
PspFI	CCCAGC	1 cut(s)	271
PspGI	CCWGG	1 cut(s)	892
PspN4I	GGNNCC	5 cut(s)	263, 385, 724, 874, 898
PspPI	GGNCC	4 cut(s)	332, 479, 686, 740
PstNI	CAGNNNCTG	2 cut(s)	128, 521
PsuI	RGATCY	3 cut(s)	625, 722, 872
PvuII	CAGCTG	1 cut(s)	271
RsaI	GTAC	5 cut(s)	98, 119, 174, 263, 809
RsaNI	GTAC	5 cut(s)	97, 118, 173, 262, 808
SaqAI	TTAA	3 cut(s)	579, 864, 888
SatI	GCNGC	3 cut(s)	48, 454, 516
Sau3AI	GATC	6 cut(s)	310, 439, 625, 661, 722, 872
Sau96I	GGNCC	4 cut(s)	332, 479, 686, 740
ScrFI	CCNGG	4 cut(s)	43, 478, 483, 894
SduI	GDGCHC	1 cut(s)	204
SetI	ASST	6 cut(s)	52, 273, 323, 520, 846, 902
SfaNI	GCATC	3 cut(s)	178, 334, 351
SinI	GGWCC	2 cut(s)	332, 740
SmlI	CTYRAG	1 cut(s)	578
SmoI	CTYRAG	1 cut(s)	578
Sse9I	AATT	2 cut(s)	163, 553
SsiI	CCGC	3 cut(s)	276, 495, 605
SspI	AATATT	2 cut(s)	340, 868
SspMI	CTAG	2 cut(s)	227, 666
StyD4I	CCNGG	4 cut(s)	41, 476, 481, 892
TaaI	ACNGT	3 cut(s)	172, 805, 812
TaiI	ACGT	1 cut(s)	846
TaqI	TCGA	2 cut(s)	75, 198
TasI	AATT	2 cut(s)	163, 553
TatI	WGTACW	2 cut(s)	96, 117
Tru1I	TTAA	3 cut(s)	579, 864, 888
Tru9I	TTAA	3 cut(s)	579, 864, 888
TscAI	CASTG	2 cut(s)	12, 334
TseI	GCWGC	3 cut(s)	47, 453, 515
TspDTI	ATGAA	2 cut(s)	36, 71
TspGWI	ACGGA	1 cut(s)	485
TspRI	CASTG	2 cut(s)	12, 334
Van91I	CCANNNNNTGG	1 cut(s)	271
Vha464I	CTTAAG	1 cut(s)	578
VpaK11BI	GGWCC	2 cut(s)	332, 740
XapI	RAATTY	1 cut(s)	553
XceI	RCATGY	1 cut(s)	95
XmiI	GTMKAC	2 cut(s)	467, 537
XspI	CTAG	2 cut(s)	227, 666

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.