pycom17g04320

PQQ-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0001008
Physical Location & Seq
Reverse (-)
2957727 .. 2959347
1621 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g04320.3

Sequence Viewer

Length: 1149 bp
ATGTTAAGACTTGTTGGCAACTTGACTTCCGAGAGTTTTTTTTTAAGTTGTATTAATGTAATTTTATGGCACCACATTTCAATTTCTTGTAGTGGTTACTATGTTGGAACATCGTCACTAGAAGAAGGACTCACCATCGAACAATGCTGTACGTTTCGTGGGAGCGTATCGAGATTAGACGTCCGAACGGGCAAAATCCTGTGGCAGACCTTCATGTTGCCTGACAATTTCGGCAAGTTTAATGAGTATGCAGGAGCAGCAATATGGGGAAGCAGCCCTTCCATTGATGTCCCTCGGAACCTTGTCTTCGTTGCCACATCGAACCTGTACTCAGCTCCTCCGCGGATAATTGAATGCCAGGAGAAGGAAAACAATCAGACAGTACCTTCTCATCCAGAGGCCTGCATTGAGCCCGAAAACCACTCCGAATCCATGGTAGCTCTTGATTTGAACACTGGGAAAATCAAATGGTATAAGCAGCTAGGAGGCTATGATATATGGTTTGGAGCCTGCCATAGACATTTGGATCCACGGTGCCCACCTGGTCCTAGTCCGGATGCAGATTTTGGTGAAGCACCAATGATGTTAACTACTTATATCAATGGGGCTAGGAGGGACCTTGTTGTTGCTGTTCAGAAAAGCGGGTTTGCGTGGGCTTTGGATCGCGATACTGGCAGCATAGTATGGTCTACGGAAGCTGGACCGGGAGGACTAGGAGGAGGAGCAATGTGGGGTGCGGCCACGGACGAAAAGAGGGTCTACACTAACATAGCCAACAGCCAGCACAAGAACTTCACTCTCAAACCATCCCAGAACACTACAATTGCTGGTGGATGGGTGGCAATGGAGGCCCGCAGCGGCAATATCCTATGGTCCACGGCGAATGCTAATGATGCTACTGCCCCAGCCGCTGTCACTGTGGCTAATGGCGTTGTTTTTGGAGGGTCTACTCATCGACTAGGACCGATATACGCGATGAATGCTAAGACCGGGAAAATCTTGTGGACATATGATACCGGAGCTACTGTATATGGCGGCATTTCGGTGAGCGACGGATGCATTTACCTTGGAAATGGATACAAGGTCTTCAATGGATTCGTTAACCCGAATTATACCGCTGGAACTTCGCTCTTTGCCTTTTGTGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PQQ PQQ_2 PQQ_3

Protein Analysis

383

Amino Acids

41.25

Weight (kDa)

6.07

Isoelectric Point (pI)

41.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 183
AccB1I GGYRCC 2 cut(s) 69, 534
AccI GTMKAC 3 cut(s) 689, 759, 947
AccII CGCG 3 cut(s) 343, 666, 974
AccIII TCCGGA 1 cut(s) 553
AciI CCGC 9 cut(s) 341, 343, 642, 737, 853, 858, 909, 1035, 1116
AclWI GGATC 3 cut(s) 521, 534, 669
AcoI YGGCCR 1 cut(s) 738
AcyI GRCGYC 1 cut(s) 180
AfaI GTAC 3 cut(s) 151, 329, 384
AfiI CCNNNNNNNGG 1 cut(s) 364
AgsI TTSAA 4 cut(s) 81, 353, 451, 1090
AjnI CCWGG 2 cut(s) 357, 541
AluBI AGCT 5 cut(s) 335, 440, 481, 698, 1022
AluI AGCT 5 cut(s) 335, 440, 481, 698, 1022
AlwI GGATC 3 cut(s) 521, 534, 669
AlwNI CAGNNNCTG 1 cut(s) 911
Aor13HI TCCGGA 1 cut(s) 553
AoxI GGCC 3 cut(s) 399, 738, 849
ApeKI GCWGC 5 cut(s) 257, 273, 478, 675, 855
ArsI GACNNNNNNTTYG 2 cut(s) 741, 773
AseI ATTAAT 1 cut(s) 54
AspS9I GGNCC 6 cut(s) 545, 616, 701, 850, 873, 962
AsuC2I CCSGG 2 cut(s) 705, 991
AsuHPI GGTGA 3 cut(s) 124, 581, 1057
AvaII GGWCC 5 cut(s) 545, 616, 701, 873, 962
BaeGI GKGCMC 1 cut(s) 539
BamHI GGATCC 1 cut(s) 526
BanI GGYRCC 2 cut(s) 69, 534
BanII GRGCYC 1 cut(s) 414
BbsI GAAGAC 2 cut(s) 298, 1078
BbvI GCAGC 5 cut(s) 269, 285, 490, 687, 867
BccI CCATC 3 cut(s) 143, 814, 828
BceAI ACGGC 1 cut(s) 894
BciT130I CCWGG 2 cut(s) 359, 543
BciVI GTATCC 1 cut(s) 1070
BcnI CCSGG 2 cut(s) 705, 991
BfaI CTAG 6 cut(s) 119, 482, 549, 609, 713, 959
BfuI GTATCC 1 cut(s) 1070
BisI GCNGC 9 cut(s) 258, 274, 479, 676, 738, 856, 859, 909, 1036
BlsI GCNGC 9 cut(s) 259, 275, 480, 677, 739, 857, 860, 910, 1037
Bme1390I CCNGG 4 cut(s) 359, 543, 705, 991
Bme18I GGWCC 5 cut(s) 545, 616, 701, 873, 962
BmgT120I GGNCC 6 cut(s) 545, 616, 701, 850, 873, 962
BmiI GGNNCC 6 cut(s) 71, 299, 508, 528, 536, 617
BmrFI CCNGG 4 cut(s) 359, 543, 705, 991
BmrI ACTGGG 1 cut(s) 465
BmsI GCATC 3 cut(s) 547, 883, 1046
BmuI ACTGGG 1 cut(s) 465
BpiI GAAGAC 2 cut(s) 298, 1078
BpuMI CCSGG 2 cut(s) 705, 991
BsaHI GRCGYC 1 cut(s) 180
BsaJI CCNNGG 7 cut(s) 293, 341, 432, 530, 741, 876, 1066
BsaWI WCCGGW 2 cut(s) 553, 1016
BsaXI ACNNNNNCTCC 2 cut(s) 1011, 1041
Bsc4I CCNNNNNNNGG 1 cut(s) 364
Bse1I ACTGG 2 cut(s) 460, 676
Bse3DI GCAATG 2 cut(s) 732, 849
BseAI TCCGGA 1 cut(s) 553
BseBI CCWGG 2 cut(s) 359, 543
BseDI CCNNGG 7 cut(s) 293, 341, 432, 530, 741, 876, 1066
BseGI GGATG 5 cut(s) 391, 562, 806, 839, 1061
BseLI CCNNNNNNNGG 1 cut(s) 364
BseMI GCAATG 2 cut(s) 732, 849
BseMII CTCAG 1 cut(s) 345
BseNI ACTGG 2 cut(s) 460, 676
BseRI GAGGAG 3 cut(s) 327, 732, 735
BseSI GKGCMC 1 cut(s) 539
BseXI GCAGC 5 cut(s) 269, 285, 490, 687, 867
BseYI CCCAGC 1 cut(s) 904
Bsh1236I CGCG 3 cut(s) 343, 666, 974
BshFI GGCC 3 cut(s) 401, 740, 851
BshNI GGYRCC 2 cut(s) 69, 534
BsiSI CCGG 4 cut(s) 554, 704, 990, 1017
BslFI GGGAC 2 cut(s) 275, 629
BslI CCNNNNNNNGG 1 cut(s) 364
BsmFI GGGAC 2 cut(s) 275, 629
BsmI GAATGC 3 cut(s) 359, 889, 985
BsnI GGCC 3 cut(s) 401, 740, 851
Bsp1286I GDGCHC 2 cut(s) 414, 539
Bsp13I TCCGGA 1 cut(s) 553
Bsp143I GATC 2 cut(s) 526, 661
Bsp19I CCATGG 1 cut(s) 432
Bsp68I TCGCGA 1 cut(s) 666
BspACI CCGC 9 cut(s) 341, 343, 642, 737, 853, 858, 909, 1035, 1116
BspANI GGCC 3 cut(s) 401, 740, 851
BspCNI CTCAG 1 cut(s) 344
BspEI TCCGGA 1 cut(s) 553
BspFNI CGCG 3 cut(s) 343, 666, 974
BspLI GGNNCC 6 cut(s) 71, 299, 508, 528, 536, 617
BspPI GGATC 3 cut(s) 521, 534, 669
BspT107I GGYRCC 2 cut(s) 69, 534
BsrDI GCAATG 2 cut(s) 732, 849
BsrI ACTGG 2 cut(s) 460, 676
BssECI CCNNGG 7 cut(s) 293, 341, 432, 530, 741, 876, 1066
BssMI GATC 2 cut(s) 526, 661
BssNI GRCGYC 1 cut(s) 180
BssT1I CCWWGG 2 cut(s) 432, 1066
Bst2UI CCWGG 2 cut(s) 359, 543
Bst4CI ACNGT 4 cut(s) 382, 534, 919, 1027
BstACI GRCGYC 1 cut(s) 180
BstC8I GCNNGC 4 cut(s) 403, 511, 782, 853
BstDEI CTNAG 2 cut(s) 331, 984
BstDSI CCRYGG 5 cut(s) 341, 432, 530, 741, 876
BstF5I GGATG 5 cut(s) 391, 562, 806, 839, 1061
BstFNI CGCG 3 cut(s) 343, 666, 974
BstKTI GATC 2 cut(s) 529, 664
BstMBI GATC 2 cut(s) 526, 661
BstMWI GCNNNNNNNGC 7 cut(s) 257, 672, 848, 893, 908, 980, 1056
BstNI CCWGG 2 cut(s) 359, 543
BstSCI CCNGG 4 cut(s) 357, 541, 703, 989
BstSLI GKGCMC 1 cut(s) 539
BstUI CGCG 3 cut(s) 343, 666, 974
BstV1I GCAGC 5 cut(s) 269, 285, 490, 687, 867
BstV2I GAAGAC 2 cut(s) 298, 1078
BstX2I RGATCY 1 cut(s) 526
BstYI RGATCY 1 cut(s) 526
BsuI GTATCC 1 cut(s) 1070
BsuRI GGCC 3 cut(s) 401, 740, 851
BtgI CCRYGG 5 cut(s) 341, 432, 530, 741, 876
BtgZI GCGATG 1 cut(s) 989
BtsCI GGATG 5 cut(s) 391, 562, 806, 839, 1061
BtsIMutI CAGTG 2 cut(s) 453, 915
BtuMI TCGCGA 1 cut(s) 666
Cac8I GCNNGC 4 cut(s) 403, 511, 782, 853
CaiI CAGNNNCTG 1 cut(s) 911
Cfr13I GGNCC 6 cut(s) 545, 616, 701, 850, 873, 962
Cfr42I CCGCGG 1 cut(s) 344
CsiI ACCWGGT 1 cut(s) 541
Csp6I GTAC 3 cut(s) 150, 328, 383
CviAII CATG 2 cut(s) 214, 433
CviQI GTAC 3 cut(s) 150, 328, 383
DdeI CTNAG 2 cut(s) 331, 984
DpnI GATC 2 cut(s) 528, 663
DpnII GATC 2 cut(s) 526, 661
EaeI YGGCCR 1 cut(s) 738
Eco130I CCWWGG 2 cut(s) 432, 1066
Eco147I AGGCCT 1 cut(s) 401
Eco24I GRGCYC 1 cut(s) 414
Eco47I GGWCC 5 cut(s) 545, 616, 701, 873, 962
EcoO109I RGGNCCY 1 cut(s) 616
EcoRII CCWGG 2 cut(s) 357, 541
EcoT14I CCWWGG 2 cut(s) 432, 1066
EcoT22I ATGCAT 1 cut(s) 1061
EcoT38I GRGCYC 1 cut(s) 414
ErhI CCWWGG 2 cut(s) 432, 1066
FaeI CATG 2 cut(s) 217, 436
FalI AAGNNNNNCTT 2 cut(s) 262, 294
FaqI GGGAC 2 cut(s) 275, 629
FatI CATG 2 cut(s) 213, 432
FauI CCCGC 2 cut(s) 635, 860
FauNDI CATATG 1 cut(s) 1009
FblI GTMKAC 3 cut(s) 689, 759, 947
Fnu4HI GCNGC 9 cut(s) 258, 274, 479, 676, 738, 856, 859, 909, 1036
FokI GGATG 5 cut(s) 378, 569, 793, 846, 1068
FriOI GRGCYC 1 cut(s) 414
Fsp4HI GCNGC 9 cut(s) 258, 274, 479, 676, 738, 856, 859, 909, 1036
FspBI CTAG 6 cut(s) 119, 482, 549, 609, 713, 959
GluI GCNGC 9 cut(s) 258, 274, 479, 676, 738, 856, 859, 909, 1036
GsaI CCCAGC 1 cut(s) 908
HaeIII GGCC 3 cut(s) 401, 740, 851
HapII CCGG 4 cut(s) 554, 704, 990, 1017
Hin1I GRCGYC 1 cut(s) 180
Hin1II CATG 2 cut(s) 217, 436
HincII GTYRAC 2 cut(s) 588, 1102
HindII GTYRAC 2 cut(s) 588, 1102
HinfI GANTC 3 cut(s) 129, 428, 1095
HpaI GTTAAC 2 cut(s) 588, 1102
HpaII CCGG 4 cut(s) 554, 704, 990, 1017
HphI GGTGA 3 cut(s) 124, 581, 1057
Hpy166II GTNNAC 7 cut(s) 588, 690, 760, 876, 948, 1005, 1102
Hpy188I TCNGA 6 cut(s) 31, 185, 297, 378, 427, 636
Hpy188III TCNNGA 5 cut(s) 171, 395, 443, 554, 665
Hpy8I GTNNAC 7 cut(s) 588, 690, 760, 876, 948, 1005, 1102
Hpy99I CGWCG 1 cut(s) 1055
HpyAV CCTTC 5 cut(s) 119, 220, 288, 358, 396
HpyCH4III ACNGT 4 cut(s) 382, 534, 919, 1027
HpyCH4IV ACGT 2 cut(s) 152, 180
HpyCH4V TGCA 4 cut(s) 251, 405, 560, 1059
HpyF10VI GCNNNNNNNGC 7 cut(s) 257, 672, 848, 893, 908, 980, 1056
HpyF3I CTNAG 2 cut(s) 331, 984
HpySE526I ACGT 2 cut(s) 152, 180
Hsp92I GRCGYC 1 cut(s) 180
Hsp92II CATG 2 cut(s) 217, 436
Kpn2I TCCGGA 1 cut(s) 553
KspAI GTTAAC 2 cut(s) 588, 1102
KspI CCGCGG 1 cut(s) 344
Kzo9I GATC 2 cut(s) 526, 661
LmnI GCTCC 6 cut(s) 162, 254, 340, 506, 722, 1019
Lsp1109I GCAGC 5 cut(s) 269, 285, 490, 687, 867
LweI GCATC 3 cut(s) 547, 883, 1046
MabI ACCWGGT 1 cut(s) 541
MaeI CTAG 6 cut(s) 119, 482, 549, 609, 713, 959
MaeII ACGT 2 cut(s) 152, 180
MaeIII GTNAC 3 cut(s) 95, 114, 913
MalI GATC 2 cut(s) 528, 663
MboI GATC 2 cut(s) 526, 661
MboII GAAGA 3 cut(s) 134, 298, 1078
MfeI CAATTG 1 cut(s) 822
MflI RGATCY 1 cut(s) 526
MhlI GDGCHC 2 cut(s) 414, 539
MluCI AATT 6 cut(s) 60, 81, 226, 348, 822, 1108
MlyI GAGTC 1 cut(s) 123
MmeI TCCRAC 1 cut(s) 85
Mph1103I ATGCAT 1 cut(s) 1061
MroI TCCGGA 1 cut(s) 553
MseI TTAA 6 cut(s) 5, 44, 54, 240, 587, 1101
MslI CAYNNNNRTG 1 cut(s) 1043
MspA1I CMGCKG 4 cut(s) 343, 858, 911, 1118
MspI CCGG 4 cut(s) 554, 704, 990, 1017
MspR9I CCNGG 4 cut(s) 359, 543, 705, 991
MunI CAATTG 1 cut(s) 822
Mva1269I GAATGC 3 cut(s) 359, 889, 985
MvaI CCWGG 2 cut(s) 359, 543
MvnI CGCG 3 cut(s) 343, 666, 974
MwoI GCNNNNNNNGC 7 cut(s) 257, 672, 848, 893, 908, 980, 1056
NciI CCSGG 2 cut(s) 705, 991
NcoI CCATGG 1 cut(s) 432
NdeI CATATG 1 cut(s) 1009
NdeII GATC 2 cut(s) 526, 661
NlaIII CATG 2 cut(s) 217, 436
NlaIV GGNNCC 6 cut(s) 71, 299, 508, 528, 536, 617
NmuCI GTSAC 2 cut(s) 114, 913
NruI TCGCGA 1 cut(s) 666
NsiI ATGCAT 1 cut(s) 1061
PceI AGGCCT 1 cut(s) 401
PctI GAATGC 3 cut(s) 359, 889, 985
PfeI GAWTC 2 cut(s) 428, 1095
PkrI GCNGC 9 cut(s) 259, 275, 480, 677, 739, 857, 860, 910, 1037
PleI GAGTC 1 cut(s) 123
PpsI GAGTC 1 cut(s) 123
PpuMI RGGWCCY 1 cut(s) 616
PshBI ATTAAT 1 cut(s) 54
Psp5II RGGWCCY 1 cut(s) 616
Psp6I CCWGG 2 cut(s) 357, 541
PspFI CCCAGC 1 cut(s) 904
PspGI CCWGG 2 cut(s) 357, 541
PspN4I GGNNCC 6 cut(s) 71, 299, 508, 528, 536, 617
PspPI GGNCC 6 cut(s) 545, 616, 701, 850, 873, 962
PspPPI RGGWCCY 1 cut(s) 616
PstNI CAGNNNCTG 1 cut(s) 911
PsuI RGATCY 1 cut(s) 526
RruI TCGCGA 1 cut(s) 666
RsaI GTAC 3 cut(s) 151, 329, 384
RsaNI GTAC 3 cut(s) 150, 328, 383
RseI CAYNNNNRTG 1 cut(s) 1043
SacII CCGCGG 1 cut(s) 344
SaqAI TTAA 6 cut(s) 5, 44, 54, 240, 587, 1101
SatI GCNGC 9 cut(s) 258, 274, 479, 676, 738, 856, 859, 909, 1036
Sau3AI GATC 2 cut(s) 526, 661
Sau96I GGNCC 6 cut(s) 545, 616, 701, 850, 873, 962
SchI GAGTC 1 cut(s) 123
ScrFI CCNGG 4 cut(s) 359, 543, 705, 991
SduI GDGCHC 2 cut(s) 414, 539
SexAI ACCWGGT 1 cut(s) 541
SfaNI GCATC 3 cut(s) 547, 883, 1046
Sfr303I CCGCGG 1 cut(s) 344
SgrBI CCGCGG 1 cut(s) 344
SinI GGWCC 5 cut(s) 545, 616, 701, 873, 962
SmiMI CAYNNNNRTG 1 cut(s) 1043
Sse9I AATT 6 cut(s) 60, 81, 226, 348, 822, 1108
SseBI AGGCCT 1 cut(s) 401
SsiI CCGC 9 cut(s) 341, 343, 642, 737, 853, 858, 909, 1035, 1116
SspMI CTAG 6 cut(s) 119, 482, 549, 609, 713, 959
StuI AGGCCT 1 cut(s) 401
StyD4I CCNGG 4 cut(s) 357, 541, 703, 989
StyI CCWWGG 2 cut(s) 432, 1066
TaaI ACNGT 4 cut(s) 382, 534, 919, 1027
TaiI ACGT 2 cut(s) 155, 183
TaqI TCGA 4 cut(s) 138, 170, 320, 955
TaqII GACCGA 1 cut(s) 979
TasI AATT 6 cut(s) 60, 81, 226, 348, 822, 1108
TatI WGTACW 1 cut(s) 327
TauI GCSGC 4 cut(s) 740, 861, 911, 1038
TfiI GAWTC 2 cut(s) 428, 1095
Tru1I TTAA 6 cut(s) 5, 44, 54, 240, 587, 1101
Tru9I TTAA 6 cut(s) 5, 44, 54, 240, 587, 1101
TscAI CASTG 2 cut(s) 460, 922
TseFI GTSAC 2 cut(s) 114, 913
TseI GCWGC 5 cut(s) 257, 273, 478, 675, 855
Tsp45I GTSAC 2 cut(s) 114, 913
TspDTI ATGAA 2 cut(s) 202, 992
TspGWI ACGGA 3 cut(s) 707, 758, 1068
TspRI CASTG 2 cut(s) 460, 922
VpaK11BI GGWCC 5 cut(s) 545, 616, 701, 873, 962
VspI ATTAAT 1 cut(s) 54
XmiI GTMKAC 3 cut(s) 689, 759, 947
XspI CTAG 6 cut(s) 119, 482, 549, 609, 713, 959
ZraI GACGTC 1 cut(s) 181
Zsp2I ATGCAT 1 cut(s) 1061
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.