Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001008

Physical Location & Seq

Genomic Coordinates Reverse (-)

5365441 .. 5366140

Gene Structure 700 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00082570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGCAAACCTTCATGTTGCCGGACAATCATGGAAACTTGGGACAATATGGGGAAGTAGTCCATCAATTGATGCTCTCAGGAAACATGTCTATATTGGCACTGGGAACACGTATTCGGTCCCCGAAAATAACAGTTCAACGGTACCTACTCATCCAGATGCCTGTGTCGAGCCTGACAACCATGGTAATTCAATCCTGGCACTTGATTTGGACTCTGGTAATATCAAATGGTACCGGCAATTGGGCGGCTACGATGTATGGTTTGTGCAGTGTGGGCTTAATGCTTCAGCTTGCCCTCCTGGACCTAATGTGGATGCTGATTTTGGGGAAGCACCTATGATGCTTAGTGCACAAGTCAATTGGAGCTGGCTAGATGTAGTTGTTGCCGTTCAGAAAAGCGGGTTTGCATGGGCTCTAGACCGGAATAATGGCCGTCTTGTGTGGTCTACGCAACGTACCGTGTATGGTGGCATATCCATAGGCAATGGCTGCGTTTACATTGGCAATGGATATAGATTCCTCTATACTGCTGAAACCTCGCTGTTCGCCTTCTATGTCGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PQQ PQQ_2 PQQ_3

Protein Analysis

187

Amino Acids

20.33

Weight (kDa)

5.4

Isoelectric Point (pI)

21.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PQQ	PF01011	15 - 151	1.9e-10	Glucose/ethanol/alcohol dehydrogenase, beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001008)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g31710 FvH4_4g31710 FvH4_6g49090 FvH4_6g49090 FvH4_6g49090 FvH4_6g49090 FvH4_6g49090 FvH4_6g49110 FvH4_6g49111
malus_domestica	MD09G1048500.v1.1 MD09G1048700.v1.1 MD13G1077000.v1.1 MD17G1048600.v1.1
prunus_persica	Prupe.1G270000_v2.0.a1 Prupe.3G270300_v2.0.a1 Prupe.3G270400_v2.0.a1 Prupe.3G270500_v2.0.a1 Prupe.3G270600_v2.0.a1
pyrus_communis	pycom13g06710 pycom17g04320 pycom17g04340
rosa_chinensis	RchiOBHm_Chr2g0168951 RchiOBHm_Chr2g0168981 RchiOBHm_Chr2g0168991 RchiOBHm_Chr4g0440311
rosa_laevigata	RLG00000006193 RLG00000021816 RLG00000021819 RLG00000021820 RLG00000021821
rosa_multiflora	Rmu_co8508477.1_g000001 Rmu_co8508477.1_g000002 Rmu_co8508477.1_g000003 Rmu_sc0001685.1_g000040 Rmu_ssc0000393.1_g000016 Rmu_ssc0000393.1_g000019 Rmu_ssc0000393.1_g000020
rosa_roxburghii	Rroxscaffold_2G00082560 Rroxscaffold_2G00082570 Rroxscaffold_5G00381190
rosa_rugosa	Rorug02G0536200 Rorug02G0536300.1 Rorug02G0536400 Rorug02G0536400 Rorug04G0325500
rosa_samantha	Rh2AG607300 Rh2AG607500 Rh2BG620000 Rh2CG588600 Rh2CG588700 Rh2CG588900 Rh2CG589000 Rh2DG630700 Rh2DG630800 Rh4AG376400 Rh4BG389400 Rh4CG404200 Rh4DG383100
rosa_wichuraiana	Rw2G050350 Rw2G050360 Rw2G050370 Rw4G032220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	142, 231
AccB1I	GGYRCC	2 cut(s)	142, 231
AccI	GTMKAC	1 cut(s)	446
AciI	CCGC	2 cut(s)	246, 399
AcoI	YGGCCR	1 cut(s)	430
AcuI	CTGAAG	1 cut(s)	270
AfaI	GTAC	3 cut(s)	144, 233, 457
AfiI	CCNNNNNNNGG	1 cut(s)	241
AflIII	ACRYGT	2 cut(s)	85, 108
AgsI	TTSAA	2 cut(s)	138, 192
AjnI	CCWGG	2 cut(s)	195, 298
AluBI	AGCT	2 cut(s)	290, 366
AluI	AGCT	2 cut(s)	290, 366
Alw21I	GWGCWC	1 cut(s)	352
Alw44I	GTGCAC	1 cut(s)	348
AoxI	GGCC	1 cut(s)	430
ApaLI	GTGCAC	1 cut(s)	348
ApeKI	GCWGC	1 cut(s)	489
Asp718I	GGTACC	2 cut(s)	142, 231
AspS9I	GGNCC	2 cut(s)	118, 302
AvaII	GGWCC	2 cut(s)	118, 302
BaeGI	GKGCMC	1 cut(s)	352
BanI	GGYRCC	2 cut(s)	142, 231
BanII	GRGCYC	1 cut(s)	415
Bbv12I	GWGCWC	1 cut(s)	352
BbvI	GCAGC	1 cut(s)	476
BccI	CCATC	1 cut(s)	70
BceAI	ACGGC	2 cut(s)	371, 417
BciT130I	CCWGG	2 cut(s)	197, 300
BfaI	CTAG	2 cut(s)	371, 416
BisI	GCNGC	2 cut(s)	247, 490
BlsI	GCNGC	2 cut(s)	248, 491
Bme1390I	CCNGG	2 cut(s)	197, 300
Bme18I	GGWCC	2 cut(s)	118, 302
BmgT120I	GGNCC	2 cut(s)	118, 302
BmiI	GGNNCC	3 cut(s)	120, 144, 233
BmrFI	CCNGG	2 cut(s)	197, 300
BmrI	ACTGGG	1 cut(s)	111
BmsI	GCATC	4 cut(s)	61, 148, 304, 330
BmuI	ACTGGG	1 cut(s)	111
BsaAI	YACGTR	1 cut(s)	111
BsaJI	CCNNGG	1 cut(s)	181
BsaWI	WCCGGW	1 cut(s)	420
Bsc4I	CCNNNNNNNGG	1 cut(s)	241
Bse118I	RCCGGY	1 cut(s)	234
Bse1I	ACTGG	1 cut(s)	106
Bse3DI	GCAATG	2 cut(s)	490, 511
BseBI	CCWGG	2 cut(s)	197, 300
BseDI	CCNNGG	1 cut(s)	181
BseGI	GGATG	2 cut(s)	151, 319
BseLI	CCNNNNNNNGG	1 cut(s)	241
BseMI	GCAATG	2 cut(s)	490, 511
BseMII	CTCAG	1 cut(s)	91
BseNI	ACTGG	1 cut(s)	106
BseSI	GKGCMC	1 cut(s)	352
BseXI	GCAGC	1 cut(s)	476
BsgI	GTGCAG	1 cut(s)	287
BshFI	GGCC	1 cut(s)	432
BshNI	GGYRCC	2 cut(s)	142, 231
BsiHKAI	GWGCWC	1 cut(s)	352
BsiSI	CCGG	3 cut(s)	21, 235, 421
BslFI	GGGAC	2 cut(s)	55, 104
BslI	CCNNNNNNNGG	1 cut(s)	241
BsmFI	GGGAC	2 cut(s)	55, 104
BsnI	GGCC	1 cut(s)	432
Bsp1286I	GDGCHC	2 cut(s)	352, 415
Bsp19I	CCATGG	1 cut(s)	181
BspACI	CCGC	2 cut(s)	246, 399
BspANI	GGCC	1 cut(s)	432
BspCNI	CTCAG	1 cut(s)	90
BspLI	GGNNCC	3 cut(s)	120, 144, 233
BspT107I	GGYRCC	2 cut(s)	142, 231
BsrDI	GCAATG	2 cut(s)	490, 511
BsrFI	RCCGGY	1 cut(s)	234
BsrI	ACTGG	1 cut(s)	106
BssAI	RCCGGY	1 cut(s)	234
BssECI	CCNNGG	1 cut(s)	181
BssT1I	CCWWGG	1 cut(s)	181
Bst2UI	CCWGG	2 cut(s)	197, 300
Bst4CI	ACNGT	3 cut(s)	134, 142, 460
BstAPI	GCANNNNNTGC	1 cut(s)	489
BstBAI	YACGTR	1 cut(s)	111
BstC8I	GCNNGC	2 cut(s)	292, 368
BstDEI	CTNAG	2 cut(s)	77, 344
BstDSI	CCRYGG	1 cut(s)	181
BstF5I	GGATG	2 cut(s)	151, 319
BstMWI	GCNNNNNNNGC	2 cut(s)	274, 489
BstNI	CCWGG	2 cut(s)	197, 300
BstNSI	RCATGY	1 cut(s)	89
BstSCI	CCNGG	2 cut(s)	195, 298
BstSLI	GKGCMC	1 cut(s)	352
BstV1I	GCAGC	1 cut(s)	476
BsuRI	GGCC	1 cut(s)	432
BtgI	CCRYGG	1 cut(s)	181
BtsCI	GGATG	2 cut(s)	151, 319
BtsI	GCAGTG	1 cut(s)	275
BtsIMutI	CAGTG	2 cut(s)	99, 275
Cac8I	GCNNGC	2 cut(s)	292, 368
Cfr10I	RCCGGY	1 cut(s)	234
Cfr13I	GGNCC	2 cut(s)	118, 302
Csp6I	GTAC	3 cut(s)	143, 232, 456
CviAII	CATG	6 cut(s)	14, 30, 86, 182, 408, 561
CviJI	RGCY	9 cut(s)	172, 249, 277, 290, 366, 370, 413, 432, 489
CviKI_1	RGCY	9 cut(s)	172, 249, 277, 290, 366, 370, 413, 432, 489
CviQI	GTAC	3 cut(s)	143, 232, 456
DdeI	CTNAG	2 cut(s)	77, 344
EaeI	YGGCCR	1 cut(s)	430
Eco130I	CCWWGG	1 cut(s)	181
Eco24I	GRGCYC	1 cut(s)	415
Eco47I	GGWCC	2 cut(s)	118, 302
Eco57I	CTGAAG	1 cut(s)	270
EcoRII	CCWGG	2 cut(s)	195, 298
EcoT14I	CCWWGG	1 cut(s)	181
EcoT38I	GRGCYC	1 cut(s)	415
ErhI	CCWWGG	1 cut(s)	181
FaeI	CATG	6 cut(s)	17, 33, 89, 185, 411, 564
FaqI	GGGAC	2 cut(s)	55, 104
FatI	CATG	6 cut(s)	13, 29, 85, 181, 407, 560
FauI	CCCGC	1 cut(s)	392
FblI	GTMKAC	1 cut(s)	446
Fnu4HI	GCNGC	2 cut(s)	247, 490
FokI	GGATG	2 cut(s)	138, 326
FriOI	GRGCYC	1 cut(s)	415
Fsp4HI	GCNGC	2 cut(s)	247, 490
FspBI	CTAG	2 cut(s)	371, 416
GluI	GCNGC	2 cut(s)	247, 490
HaeIII	GGCC	1 cut(s)	432
HapII	CCGG	3 cut(s)	21, 235, 421
Hin1II	CATG	6 cut(s)	17, 33, 89, 185, 411, 564
HinfI	GANTC	2 cut(s)	212, 516
HpaII	CCGG	3 cut(s)	21, 235, 421
Hpy166II	GTNNAC	3 cut(s)	350, 447, 496
Hpy188I	TCNGA	1 cut(s)	393
Hpy188III	TCNNGA	3 cut(s)	79, 155, 416
Hpy8I	GTNNAC	3 cut(s)	350, 447, 496
HpyAV	CCTTC	2 cut(s)	20, 559
HpyCH4III	ACNGT	3 cut(s)	134, 142, 460
HpyCH4IV	ACGT	2 cut(s)	110, 454
HpyCH4V	TGCA	3 cut(s)	268, 350, 407
HpyF10VI	GCNNNNNNNGC	2 cut(s)	274, 489
HpyF3I	CTNAG	2 cut(s)	77, 344
HpySE526I	ACGT	2 cut(s)	110, 454
Hsp92II	CATG	6 cut(s)	17, 33, 89, 185, 411, 564
KpnI	GGTACC	2 cut(s)	146, 235
LmnI	GCTCC	1 cut(s)	363
Lsp1109I	GCAGC	1 cut(s)	476
LweI	GCATC	4 cut(s)	61, 148, 304, 330
MaeI	CTAG	2 cut(s)	371, 416
MaeII	ACGT	2 cut(s)	110, 454
MfeI	CAATTG	3 cut(s)	66, 239, 358
MhlI	GDGCHC	2 cut(s)	352, 415
MluCI	AATT	4 cut(s)	66, 187, 239, 358
MlyI	GAGTC	1 cut(s)	206
MnlI	CCTC	3 cut(s)	306, 530, 547
MseI	TTAA	1 cut(s)	279
MslI	CAYNNNNRTG	1 cut(s)	156
MspI	CCGG	3 cut(s)	21, 235, 421
MspR9I	CCNGG	2 cut(s)	197, 300
MunI	CAATTG	3 cut(s)	66, 239, 358
MvaI	CCWGG	2 cut(s)	197, 300
MwoI	GCNNNNNNNGC	2 cut(s)	274, 489
NcoI	CCATGG	1 cut(s)	181
NlaIII	CATG	6 cut(s)	17, 33, 89, 185, 411, 564
NlaIV	GGNNCC	3 cut(s)	120, 144, 233
NspI	RCATGY	1 cut(s)	89
PciI	ACATGT	1 cut(s)	85
PfeI	GAWTC	1 cut(s)	516
PfoI	TCCNGGA	1 cut(s)	298
PkrI	GCNGC	2 cut(s)	248, 491
PleI	GAGTC	1 cut(s)	206
PpsI	GAGTC	1 cut(s)	206
Ppu21I	YACGTR	1 cut(s)	111
PscI	ACATGT	1 cut(s)	85
Psp6I	CCWGG	2 cut(s)	195, 298
PspGI	CCWGG	2 cut(s)	195, 298
PspN4I	GGNNCC	3 cut(s)	120, 144, 233
PspPI	GGNCC	2 cut(s)	118, 302
RsaI	GTAC	3 cut(s)	144, 233, 457
RsaNI	GTAC	3 cut(s)	143, 232, 456
RseI	CAYNNNNRTG	1 cut(s)	156
SaqAI	TTAA	1 cut(s)	279
SatI	GCNGC	2 cut(s)	247, 490
Sau96I	GGNCC	2 cut(s)	118, 302
SchI	GAGTC	1 cut(s)	206
ScrFI	CCNGG	2 cut(s)	197, 300
SduI	GDGCHC	2 cut(s)	352, 415
SetI	ASST	9 cut(s)	12, 113, 148, 292, 307, 337, 368, 457, 539
SfaNI	GCATC	4 cut(s)	61, 148, 304, 330
SinI	GGWCC	2 cut(s)	118, 302
SmiMI	CAYNNNNRTG	1 cut(s)	156
Sse9I	AATT	4 cut(s)	66, 187, 239, 358
SsiI	CCGC	2 cut(s)	246, 399
SspMI	CTAG	2 cut(s)	371, 416
StyD4I	CCNGG	2 cut(s)	195, 298
StyI	CCWWGG	1 cut(s)	181
TaaI	ACNGT	3 cut(s)	134, 142, 460
TaiI	ACGT	2 cut(s)	113, 457
TaqI	TCGA	1 cut(s)	168
TaqII	GACCGA	1 cut(s)	106
TasI	AATT	4 cut(s)	66, 187, 239, 358
TauI	GCSGC	1 cut(s)	249
TfiI	GAWTC	1 cut(s)	516
Tru1I	TTAA	1 cut(s)	279
Tru9I	TTAA	1 cut(s)	279
TscAI	CASTG	2 cut(s)	106, 275
TseI	GCWGC	1 cut(s)	489
TspRI	CASTG	2 cut(s)	106, 275
VneI	GTGCAC	1 cut(s)	348
VpaK11BI	GGWCC	2 cut(s)	118, 302
XbaI	TCTAGA	1 cut(s)	415
XceI	RCATGY	1 cut(s)	89
XmiI	GTMKAC	1 cut(s)	446
XspI	CTAG	2 cut(s)	371, 416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.