Rh2CG588700

PQQ enzyme repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0001008
Physical Location & Seq
Forward (+)
76607054 .. 76607413
360 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG588700.1

Sequence Viewer

Length: 360 bp
ATGCTACCGGATAATGATGGAAACCTGGGACAATATTCCGGTGCAGCTATTTGGGGCAGTAGTCCATCAATTGATGTCCATAGAAAACATGCGTATATTGCTACCGCGAACGTGTACTCGGTCCCTGAAAATGTAAGCCAATGCCAAGAAAACCAGAATAACAATTCAACATCCCAACCCACTCATCCAGAGGCAACTCAATGCTTGCACTTGATATCGATCGACTCTGGCAATATCAAGTGGGCAAGTGGTACCGTCAGTTGGGCGGCTATGATGTGTGGTTCGTACAATGTTTCCTCAATGCTTCAACTTGCCCTCCCGGACCAAATGTGGATGCTGATTTTGGTGAAGCACCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PQQ PQQ_2 PQQ_3

Protein Analysis

119

Amino Acids

13.03

Weight (kDa)

5.85

Isoelectric Point (pI)

32.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 251
AccB1I GGYRCC 1 cut(s) 251
AccII CGCG 1 cut(s) 107
AciI CCGC 2 cut(s) 105, 266
AfaI GTAC 3 cut(s) 116, 253, 287
AfiI CCNNNNNNNGG 1 cut(s) 261
AflIII ACRYGT 1 cut(s) 111
AgsI TTSAA 2 cut(s) 168, 308
AjnI CCWGG 1 cut(s) 24
AluBI AGCT 1 cut(s) 47
AluI AGCT 1 cut(s) 47
ApeKI GCWGC 1 cut(s) 44
Asp718I GGTACC 1 cut(s) 251
AspS9I GGNCC 2 cut(s) 121, 322
AsuC2I CCSGG 1 cut(s) 320
AsuHPI GGTGA 1 cut(s) 358
AvaII GGWCC 2 cut(s) 121, 322
BanI GGYRCC 1 cut(s) 251
BbvI GCAGC 1 cut(s) 56
BccI CCATC 2 cut(s) 11, 73
BciT130I CCWGG 1 cut(s) 26
BcnI CCSGG 1 cut(s) 320
BisI GCNGC 2 cut(s) 45, 267
BlsI GCNGC 2 cut(s) 46, 268
Bme1390I CCNGG 2 cut(s) 26, 320
Bme18I GGWCC 2 cut(s) 121, 322
BmgT120I GGNCC 2 cut(s) 121, 322
BmiI GGNNCC 2 cut(s) 123, 253
BmrFI CCNGG 2 cut(s) 26, 320
BmsI GCATC 1 cut(s) 324
BpuMI CCSGG 1 cut(s) 320
Bsa29I ATCGAT 1 cut(s) 218
BsaBI GATNNNNATC 1 cut(s) 218
BsaJI CCNNGG 1 cut(s) 25
BsaWI WCCGGW 2 cut(s) 7, 38
BsaXI ACNNNNNCTCC 2 cut(s) 300, 330
Bsc4I CCNNNNNNNGG 1 cut(s) 261
Bse8I GATNNNNATC 1 cut(s) 218
BseBI CCWGG 1 cut(s) 26
BseCI ATCGAT 1 cut(s) 218
BseDI CCNNGG 1 cut(s) 25
BseGI GGATG 3 cut(s) 170, 184, 339
BseJI GATNNNNATC 1 cut(s) 218
BseLI CCNNNNNNNGG 1 cut(s) 261
BseXI GCAGC 1 cut(s) 56
BsgI GTGCAG 1 cut(s) 63
Bsh1236I CGCG 1 cut(s) 107
Bsh1285I CGRYCG 1 cut(s) 222
BshNI GGYRCC 1 cut(s) 251
BshVI ATCGAT 1 cut(s) 218
BsiEI CGRYCG 1 cut(s) 222
BsiSI CCGG 3 cut(s) 8, 39, 320
BslFI GGGAC 2 cut(s) 42, 107
BslI CCNNNNNNNGG 1 cut(s) 261
BsmFI GGGAC 2 cut(s) 42, 107
Bsp143I GATC 1 cut(s) 219
BspACI CCGC 2 cut(s) 105, 266
BspDI ATCGAT 1 cut(s) 218
BspFNI CGCG 1 cut(s) 107
BspLI GGNNCC 2 cut(s) 123, 253
BspT107I GGYRCC 1 cut(s) 251
BssECI CCNNGG 1 cut(s) 25
BssMI GATC 1 cut(s) 219
Bst2UI CCWGG 1 cut(s) 26
Bst4CI ACNGT 1 cut(s) 256
BstC8I GCNNGC 1 cut(s) 206
BstF5I GGATG 3 cut(s) 170, 184, 339
BstFNI CGCG 1 cut(s) 107
BstKTI GATC 1 cut(s) 222
BstMBI GATC 1 cut(s) 219
BstMCI CGRYCG 1 cut(s) 222
BstMWI GCNNNNNNNGC 1 cut(s) 98
BstNI CCWGG 1 cut(s) 26
BstNSI RCATGY 1 cut(s) 92
BstSCI CCNGG 2 cut(s) 24, 318
BstUI CGCG 1 cut(s) 107
BstV1I GCAGC 1 cut(s) 56
Bsu15I ATCGAT 1 cut(s) 218
BsuTUI ATCGAT 1 cut(s) 218
BtsCI GGATG 3 cut(s) 170, 184, 339
Cac8I GCNNGC 1 cut(s) 206
Cfr13I GGNCC 2 cut(s) 121, 322
ClaI ATCGAT 1 cut(s) 218
Csp6I GTAC 3 cut(s) 115, 252, 286
CviAII CATG 1 cut(s) 89
CviJI RGCY 3 cut(s) 47, 138, 269
CviKI_1 RGCY 3 cut(s) 47, 138, 269
CviQI GTAC 3 cut(s) 115, 252, 286
DpnI GATC 1 cut(s) 221
DpnII GATC 1 cut(s) 219
Eco32I GATATC 1 cut(s) 216
Eco47I GGWCC 2 cut(s) 121, 322
EcoRII CCWGG 1 cut(s) 24
EcoRV GATATC 1 cut(s) 216
FaeI CATG 1 cut(s) 92
FaiI YATR 4 cut(s) 81, 90, 96, 272
FaqI GGGAC 2 cut(s) 42, 107
FatI CATG 1 cut(s) 88
Fnu4HI GCNGC 2 cut(s) 45, 267
FokI GGATG 3 cut(s) 157, 171, 346
Fsp4HI GCNGC 2 cut(s) 45, 267
GluI GCNGC 2 cut(s) 45, 267
HapII CCGG 3 cut(s) 8, 39, 320
Hin1II CATG 1 cut(s) 92
HinfI GANTC 1 cut(s) 224
HpaII CCGG 3 cut(s) 8, 39, 320
HphI GGTGA 1 cut(s) 358
Hpy166II GTNNAC 1 cut(s) 115
Hpy188III TCNNGA 1 cut(s) 188
Hpy8I GTNNAC 1 cut(s) 115
HpyCH4III ACNGT 1 cut(s) 256
HpyCH4IV ACGT 1 cut(s) 111
HpyCH4V TGCA 2 cut(s) 44, 208
HpyF10VI GCNNNNNNNGC 1 cut(s) 98
HpySE526I ACGT 1 cut(s) 111
Hsp92II CATG 1 cut(s) 92
KpnI GGTACC 1 cut(s) 255
Kzo9I GATC 1 cut(s) 219
LpnPI CCDG 9 cut(s) 11, 21, 38, 52, 138, 167, 201, 213, 333
Lsp1109I GCAGC 1 cut(s) 56
LweI GCATC 1 cut(s) 324
MaeII ACGT 1 cut(s) 111
MalI GATC 1 cut(s) 221
MboI GATC 1 cut(s) 219
MfeI CAATTG 1 cut(s) 69
MluCI AATT 2 cut(s) 69, 163
MlyI GAGTC 1 cut(s) 218
MnlI CCTC 3 cut(s) 184, 307, 326
MspI CCGG 3 cut(s) 8, 39, 320
MspR9I CCNGG 2 cut(s) 26, 320
MunI CAATTG 1 cut(s) 69
MvaI CCWGG 1 cut(s) 26
MvnI CGCG 1 cut(s) 107
MwoI GCNNNNNNNGC 1 cut(s) 98
NciI CCSGG 1 cut(s) 320
NdeII GATC 1 cut(s) 219
NlaIII CATG 1 cut(s) 92
NlaIV GGNNCC 2 cut(s) 123, 253
NspI RCATGY 1 cut(s) 92
PfoI TCCNGGA 1 cut(s) 318
PkrI GCNGC 2 cut(s) 46, 268
Ple19I CGATCG 1 cut(s) 222
PleI GAGTC 1 cut(s) 218
PpsI GAGTC 1 cut(s) 218
Psp6I CCWGG 1 cut(s) 24
PspGI CCWGG 1 cut(s) 24
PspN4I GGNNCC 2 cut(s) 123, 253
PspPI GGNCC 2 cut(s) 121, 322
PvuI CGATCG 1 cut(s) 222
RsaI GTAC 3 cut(s) 116, 253, 287
RsaNI GTAC 3 cut(s) 115, 252, 286
SatI GCNGC 2 cut(s) 45, 267
Sau3AI GATC 1 cut(s) 219
Sau96I GGNCC 2 cut(s) 121, 322
SchI GAGTC 1 cut(s) 218
ScrFI CCNGG 2 cut(s) 26, 320
SetI ASST 3 cut(s) 27, 49, 114
SfaNI GCATC 1 cut(s) 324
SinI GGWCC 2 cut(s) 121, 322
Sse9I AATT 2 cut(s) 69, 163
SsiI CCGC 2 cut(s) 105, 266
SspI AATATT 1 cut(s) 35
StyD4I CCNGG 2 cut(s) 24, 318
TaaI ACNGT 1 cut(s) 256
TaiI ACGT 1 cut(s) 114
TaqI TCGA 2 cut(s) 218, 222
TaqII GACCGA 1 cut(s) 109
TasI AATT 2 cut(s) 69, 163
TatI WGTACW 1 cut(s) 114
TauI GCSGC 1 cut(s) 269
TseI GCWGC 1 cut(s) 44
VpaK11BI GGWCC 2 cut(s) 121, 322
XceI RCATGY 1 cut(s) 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.