Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8508477.1

Orthogroup ID

OG0001008

Physical Location & Seq

Genomic Coordinates Forward (+)

348 .. 1433

Gene Structure 1086 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8508477.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

atgttgccggacaataatggaaacttgggacaatattccggagtggcaatatggggaagttgtccatcaattgatgctctcaggaaacatgtctatattgccactgggaacacgtattcggtccccgaaaatgtaagtcaatgtcaagaaaatcagaacagttcaacggtacctactcatccagatgcctgtgtagagcctgacaaccatggtaattcaatcctggcacttgatttggacactgcttaccctcctggacctaatgtggatgctgattttggggaagcacctatgatgcctagtgcacaagtcaatgggagcaagctagatttagttgttgccgttcagaaaagcgggtttgcatgggctctagatcggaataatggcagccttgtgtggtctacgcaagctgggcctagtggcattggtggaggaggaatttggggagcagctactgatgcgaaaagggtatacaccaacattgctaattctggtgccaaaaatttcactctcaagccatcgaacaaggtaacgacttcgggtggatgggtggcaatggactctggcagtggcgagaatctatggtcaacagcgaatcccagcaatgcgacttcttatggaccggttagcgtagctaatgatgtcctttttggtggatccacaagcccaaaaggggagatatacgccatggacgccaagactggcgaagttttgtggtcctatgtcaccggagcaaccgtgtatgttggcatgtccataagcaatggttgcatttacattggcaatggatatagacctccatttactgctggaacctcgttgttcgccttctgtgtaacataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PQQ PQQ_2 PQQ_3

Protein Analysis

280

Amino Acids

29.05

Weight (kDa)

4.7

Isoelectric Point (pI)

21.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001008)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g31710 FvH4_4g31710 FvH4_6g49090 FvH4_6g49090 FvH4_6g49090 FvH4_6g49090 FvH4_6g49090 FvH4_6g49110 FvH4_6g49111
malus_domestica	MD09G1048500.v1.1 MD09G1048700.v1.1 MD13G1077000.v1.1 MD17G1048600.v1.1
prunus_persica	Prupe.1G270000_v2.0.a1 Prupe.3G270300_v2.0.a1 Prupe.3G270400_v2.0.a1 Prupe.3G270500_v2.0.a1 Prupe.3G270600_v2.0.a1
pyrus_communis	pycom13g06710 pycom17g04320 pycom17g04340
rosa_chinensis	RchiOBHm_Chr2g0168951 RchiOBHm_Chr2g0168981 RchiOBHm_Chr2g0168991 RchiOBHm_Chr4g0440311
rosa_laevigata	RLG00000006193 RLG00000021816 RLG00000021819 RLG00000021820 RLG00000021821
rosa_multiflora	Rmu_co8508477.1_g000001 Rmu_co8508477.1_g000002 Rmu_co8508477.1_g000003 Rmu_sc0001685.1_g000040 Rmu_ssc0000393.1_g000016 Rmu_ssc0000393.1_g000019 Rmu_ssc0000393.1_g000020
rosa_roxburghii	Rroxscaffold_2G00082560 Rroxscaffold_2G00082570 Rroxscaffold_5G00381190
rosa_rugosa	Rorug02G0536200 Rorug02G0536300.1 Rorug02G0536400 Rorug02G0536400 Rorug04G0325500
rosa_samantha	Rh2AG607300 Rh2AG607500 Rh2BG620000 Rh2CG588600 Rh2CG588700 Rh2CG588900 Rh2CG589000 Rh2DG630700 Rh2DG630800 Rh4AG376400 Rh4BG389400 Rh4CG404200 Rh4DG383100
rosa_wichuraiana	Rw2G050350 Rw2G050360 Rw2G050370 Rw4G032220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	169
AccB1I	GGYRCC	2 cut(s)	169, 494
AccI	GTMKAC	2 cut(s)	401, 471
AccIII	TCCGGA	1 cut(s)	38
AciI	CCGC	1 cut(s)	354
AclWI	GGATC	2 cut(s)	651, 664
AcsI	RAATTY	2 cut(s)	438, 502
AcyI	GRCGYC	1 cut(s)	693
AfaI	GTAC	1 cut(s)	171
AfiI	CCNNNNNNNGG	1 cut(s)	673
AflIII	ACRYGT	2 cut(s)	88, 111
AgeI	ACCGGT	1 cut(s)	622
AgsI	TTSAA	2 cut(s)	165, 219
AjnI	CCWGG	2 cut(s)	222, 253
AluBI	AGCT	4 cut(s)	325, 410, 452, 635
AluI	AGCT	4 cut(s)	325, 410, 452, 635
Alw21I	GWGCWC	1 cut(s)	307
Alw44I	GTGCAC	1 cut(s)	303
AlwI	GGATC	2 cut(s)	651, 664
AlwNI	CAGNNNCTG	1 cut(s)	455
Aor13HI	TCCGGA	1 cut(s)	38
AoxI	GGCC	1 cut(s)	413
ApaLI	GTGCAC	1 cut(s)	303
ApeKI	GCWGC	2 cut(s)	387, 449
ApoI	RAATTY	2 cut(s)	438, 502
AsiGI	ACCGGT	1 cut(s)	622
Asp718I	GGTACC	1 cut(s)	169
AspS9I	GGNCC	5 cut(s)	121, 257, 413, 620, 717
AsuHPI	GGTGA	1 cut(s)	718
AvaII	GGWCC	4 cut(s)	121, 257, 620, 717
BaeGI	GKGCMC	1 cut(s)	307
BamHI	GGATCC	1 cut(s)	656
BanI	GGYRCC	2 cut(s)	169, 494
BanII	GRGCYC	1 cut(s)	370
Bbv12I	GWGCWC	1 cut(s)	307
BbvI	GCAGC	2 cut(s)	399, 461
BccI	CCATC	3 cut(s)	73, 526, 540
BceAI	ACGGC	1 cut(s)	326
BciT130I	CCWGG	2 cut(s)	224, 255
BfaI	CTAG	4 cut(s)	300, 326, 371, 417
BisI	GCNGC	2 cut(s)	388, 450
BlsI	GCNGC	2 cut(s)	389, 451
Bme1390I	CCNGG	2 cut(s)	224, 255
Bme18I	GGWCC	4 cut(s)	121, 257, 620, 717
BmgT120I	GGNCC	5 cut(s)	121, 257, 413, 620, 717
BmiI	GGNNCC	5 cut(s)	123, 171, 496, 658, 814
BmrFI	CCNGG	2 cut(s)	224, 255
BmrI	ACTGGG	1 cut(s)	114
BmsI	GCATC	5 cut(s)	64, 175, 259, 285, 448
BmuI	ACTGGG	1 cut(s)	114
BpuEI	CTTGAG	1 cut(s)	497
BsaAI	YACGTR	1 cut(s)	114
BsaHI	GRCGYC	1 cut(s)	693
BsaJI	CCNNGG	2 cut(s)	208, 687
BsaWI	WCCGGW	3 cut(s)	38, 622, 728
BsaXI	ACNNNNNCTCC	2 cut(s)	723, 753
Bsc4I	CCNNNNNNNGG	1 cut(s)	673
Bse118I	RCCGGY	1 cut(s)	622
Bse1I	ACTGG	2 cut(s)	109, 706
Bse3DI	GCAATG	5 cut(s)	480, 561, 610, 769, 790
BseAI	TCCGGA	1 cut(s)	38
BseBI	CCWGG	2 cut(s)	224, 255
BseDI	CCNNGG	2 cut(s)	208, 687
BseGI	GGATG	3 cut(s)	178, 274, 551
BseLI	CCNNNNNNNGG	1 cut(s)	673
BseMI	GCAATG	5 cut(s)	480, 561, 610, 769, 790
BseMII	CTCAG	1 cut(s)	94
BseNI	ACTGG	2 cut(s)	109, 706
BseRI	GAGGAG	1 cut(s)	447
BseSI	GKGCMC	1 cut(s)	307
BseXI	GCAGC	2 cut(s)	399, 461
BseYI	CCCAGC	2 cut(s)	410, 599
BshFI	GGCC	1 cut(s)	415
BshNI	GGYRCC	2 cut(s)	169, 494
BshTI	ACCGGT	1 cut(s)	622
BsiHKAI	GWGCWC	1 cut(s)	307
BsiSI	CCGG	4 cut(s)	8, 39, 623, 729
BslFI	GGGAC	2 cut(s)	42, 107
BslI	CCNNNNNNNGG	1 cut(s)	673
BsmFI	GGGAC	2 cut(s)	42, 107
BsnI	GGCC	1 cut(s)	415
Bsp1286I	GDGCHC	2 cut(s)	307, 370
Bsp13I	TCCGGA	1 cut(s)	38
Bsp143I	GATC	2 cut(s)	373, 656
Bsp19I	CCATGG	2 cut(s)	208, 687
BspACI	CCGC	1 cut(s)	354
BspANI	GGCC	1 cut(s)	415
BspCNI	CTCAG	1 cut(s)	93
BspEI	TCCGGA	1 cut(s)	38
BspLI	GGNNCC	5 cut(s)	123, 171, 496, 658, 814
BspPI	GGATC	2 cut(s)	651, 664
BspT107I	GGYRCC	2 cut(s)	169, 494
BsrDI	GCAATG	5 cut(s)	480, 561, 610, 769, 790
BsrFI	RCCGGY	1 cut(s)	622
BsrI	ACTGG	2 cut(s)	109, 706
BssAI	RCCGGY	1 cut(s)	622
BssECI	CCNNGG	2 cut(s)	208, 687
BssMI	GATC	2 cut(s)	373, 656
BssNAI	GTATAC	1 cut(s)	472
BssNI	GRCGYC	1 cut(s)	693
BssT1I	CCWWGG	2 cut(s)	208, 687
Bst1107I	GTATAC	1 cut(s)	472
Bst2UI	CCWGG	2 cut(s)	224, 255
Bst4CI	ACNGT	3 cut(s)	161, 169, 739
BstACI	GRCGYC	1 cut(s)	693
BstAPI	GCANNNNNTGC	1 cut(s)	768
BstBAI	YACGTR	1 cut(s)	114
BstC8I	GCNNGC	2 cut(s)	323, 408
BstDEI	CTNAG	1 cut(s)	80
BstDSI	CCRYGG	2 cut(s)	208, 687
BstF5I	GGATG	3 cut(s)	178, 274, 551
BstKTI	GATC	2 cut(s)	376, 659
BstMBI	GATC	2 cut(s)	373, 656
BstMWI	GCNNNNNNNGC	4 cut(s)	412, 458, 692, 768
BstNI	CCWGG	2 cut(s)	224, 255
BstNSI	RCATGY	2 cut(s)	92, 754
BstSCI	CCNGG	2 cut(s)	222, 253
BstSLI	GKGCMC	1 cut(s)	307
BstV1I	GCAGC	2 cut(s)	399, 461
BstX2I	RGATCY	1 cut(s)	656
BstYI	RGATCY	1 cut(s)	656
BstZ17I	GTATAC	1 cut(s)	472
BsuRI	GGCC	1 cut(s)	415
BtgI	CCRYGG	2 cut(s)	208, 687
BtsCI	GGATG	3 cut(s)	178, 274, 551
BtsI	GCAGTG	2 cut(s)	240, 574
BtsIMutI	CAGTG	3 cut(s)	102, 240, 574
Cac8I	GCNNGC	2 cut(s)	323, 408
CaiI	CAGNNNCTG	1 cut(s)	455
Cfr10I	RCCGGY	1 cut(s)	622
Cfr13I	GGNCC	5 cut(s)	121, 257, 413, 620, 717
CseI	GACGC	1 cut(s)	701
Csp6I	GTAC	1 cut(s)	170
CspAI	ACCGGT	1 cut(s)	622
CviAII	CATG	5 cut(s)	89, 209, 363, 688, 751
CviQI	GTAC	1 cut(s)	170
DdeI	CTNAG	1 cut(s)	80
DpnI	GATC	2 cut(s)	375, 658
DpnII	GATC	2 cut(s)	373, 656
Eco130I	CCWWGG	2 cut(s)	208, 687
Eco24I	GRGCYC	1 cut(s)	370
Eco47I	GGWCC	4 cut(s)	121, 257, 620, 717
EcoRII	CCWGG	2 cut(s)	222, 253
EcoT14I	CCWWGG	2 cut(s)	208, 687
EcoT38I	GRGCYC	1 cut(s)	370
ErhI	CCWWGG	2 cut(s)	208, 687
FaeI	CATG	5 cut(s)	92, 212, 366, 691, 754
FaqI	GGGAC	2 cut(s)	42, 107
FatI	CATG	5 cut(s)	88, 208, 362, 687, 750
FauI	CCCGC	1 cut(s)	347
FblI	GTMKAC	2 cut(s)	401, 471
Fnu4HI	GCNGC	2 cut(s)	388, 450
FokI	GGATG	3 cut(s)	165, 281, 558
FriOI	GRGCYC	1 cut(s)	370
Fsp4HI	GCNGC	2 cut(s)	388, 450
FspBI	CTAG	4 cut(s)	300, 326, 371, 417
GluI	GCNGC	2 cut(s)	388, 450
GsaI	CCCAGC	2 cut(s)	414, 603
HaeIII	GGCC	1 cut(s)	415
HapII	CCGG	4 cut(s)	8, 39, 623, 729
HgaI	GACGC	1 cut(s)	701
Hin1I	GRCGYC	1 cut(s)	693
Hin1II	CATG	5 cut(s)	92, 212, 366, 691, 754
HincII	GTYRAC	1 cut(s)	588
HindII	GTYRAC	1 cut(s)	588
HinfI	GANTC	3 cut(s)	560, 577, 595
HpaII	CCGG	4 cut(s)	8, 39, 623, 729
HphI	GGTGA	1 cut(s)	718
Hpy166II	GTNNAC	4 cut(s)	305, 402, 472, 588
Hpy188I	TCNGA	3 cut(s)	156, 348, 378
Hpy188III	TCNNGA	5 cut(s)	39, 82, 146, 182, 371
Hpy8I	GTNNAC	4 cut(s)	305, 402, 472, 588
HpyAV	CCTTC	1 cut(s)	838
HpyCH4III	ACNGT	3 cut(s)	161, 169, 739
HpyCH4IV	ACGT	1 cut(s)	113
HpyCH4V	TGCA	3 cut(s)	305, 362, 771
HpyF10VI	GCNNNNNNNGC	4 cut(s)	412, 458, 692, 768
HpyF3I	CTNAG	1 cut(s)	80
HpySE526I	ACGT	1 cut(s)	113
Hsp92I	GRCGYC	1 cut(s)	693
Hsp92II	CATG	5 cut(s)	92, 212, 366, 691, 754
Kpn2I	TCCGGA	1 cut(s)	38
KpnI	GGTACC	1 cut(s)	173
Kzo9I	GATC	2 cut(s)	373, 656
LmnI	GCTCC	3 cut(s)	318, 446, 731
Lsp1109I	GCAGC	2 cut(s)	399, 461
LweI	GCATC	5 cut(s)	64, 175, 259, 285, 448
MaeI	CTAG	4 cut(s)	300, 326, 371, 417
MaeII	ACGT	1 cut(s)	113
MaeIII	GTNAC	3 cut(s)	529, 724, 835
MalI	GATC	2 cut(s)	375, 658
MboI	GATC	2 cut(s)	373, 656
MfeI	CAATTG	1 cut(s)	69
MflI	RGATCY	1 cut(s)	656
MhlI	GDGCHC	2 cut(s)	307, 370
MluCI	AATT	5 cut(s)	69, 214, 438, 487, 502
MlyI	GAGTC	1 cut(s)	554
MnlI	CCTC	5 cut(s)	261, 425, 428, 807, 826
MroI	TCCGGA	1 cut(s)	38
MslI	CAYNNNNRTG	1 cut(s)	183
MspI	CCGG	4 cut(s)	8, 39, 623, 729
MspR9I	CCNGG	2 cut(s)	224, 255
MunI	CAATTG	1 cut(s)	69
MvaI	CCWGG	2 cut(s)	224, 255
MwoI	GCNNNNNNNGC	4 cut(s)	412, 458, 692, 768
NcoI	CCATGG	2 cut(s)	208, 687
NdeII	GATC	2 cut(s)	373, 656
NlaIII	CATG	5 cut(s)	92, 212, 366, 691, 754
NlaIV	GGNNCC	5 cut(s)	123, 171, 496, 658, 814
NmuCI	GTSAC	1 cut(s)	724
NspI	RCATGY	2 cut(s)	92, 754
PciI	ACATGT	1 cut(s)	88
PfeI	GAWTC	2 cut(s)	577, 595
PfoI	TCCNGGA	1 cut(s)	253
PinAI	ACCGGT	1 cut(s)	622
PkrI	GCNGC	2 cut(s)	389, 451
PleI	GAGTC	1 cut(s)	554
PpsI	GAGTC	1 cut(s)	554
Ppu21I	YACGTR	1 cut(s)	114
PscI	ACATGT	1 cut(s)	88
Psp6I	CCWGG	2 cut(s)	222, 253
PspFI	CCCAGC	2 cut(s)	410, 599
PspGI	CCWGG	2 cut(s)	222, 253
PspN4I	GGNNCC	5 cut(s)	123, 171, 496, 658, 814
PspPI	GGNCC	5 cut(s)	121, 257, 413, 620, 717
PstNI	CAGNNNCTG	1 cut(s)	455
PsuI	RGATCY	1 cut(s)	656
RsaI	GTAC	1 cut(s)	171
RsaNI	GTAC	1 cut(s)	170
RseI	CAYNNNNRTG	1 cut(s)	183
SatI	GCNGC	2 cut(s)	388, 450
Sau3AI	GATC	2 cut(s)	373, 656
Sau96I	GGNCC	5 cut(s)	121, 257, 413, 620, 717
SchI	GAGTC	1 cut(s)	554
ScrFI	CCNGG	2 cut(s)	224, 255
SduI	GDGCHC	2 cut(s)	307, 370
SfaNI	GCATC	5 cut(s)	64, 175, 259, 285, 448
SinI	GGWCC	4 cut(s)	121, 257, 620, 717
SmiMI	CAYNNNNRTG	1 cut(s)	183
SmlI	CTYRAG	1 cut(s)	512
SmoI	CTYRAG	1 cut(s)	512
Sse9I	AATT	5 cut(s)	69, 214, 438, 487, 502
SsiI	CCGC	1 cut(s)	354
SspI	AATATT	1 cut(s)	35
SspMI	CTAG	4 cut(s)	300, 326, 371, 417
StyD4I	CCNGG	2 cut(s)	222, 253
StyI	CCWWGG	2 cut(s)	208, 687
TaaI	ACNGT	3 cut(s)	161, 169, 739
TaiI	ACGT	1 cut(s)	116
TaqI	TCGA	1 cut(s)	521
TaqII	GACCGA	1 cut(s)	109
TasI	AATT	5 cut(s)	69, 214, 438, 487, 502
TfiI	GAWTC	2 cut(s)	577, 595
TscAI	CASTG	3 cut(s)	109, 247, 574
TseFI	GTSAC	1 cut(s)	724
TseI	GCWGC	2 cut(s)	387, 449
Tsp45I	GTSAC	1 cut(s)	724
TspRI	CASTG	3 cut(s)	109, 247, 574
VneI	GTGCAC	1 cut(s)	303
VpaK11BI	GGWCC	4 cut(s)	121, 257, 620, 717
XapI	RAATTY	2 cut(s)	438, 502
XbaI	TCTAGA	1 cut(s)	370
XceI	RCATGY	2 cut(s)	92, 754
XmiI	GTMKAC	2 cut(s)	401, 471
XspI	CTAG	4 cut(s)	300, 326, 371, 417

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.