Rh2CG588900

PQQ enzyme repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0001008
Physical Location & Seq
Forward (+)
76609323 .. 76618299
8977 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG588900.1

Sequence Viewer

Length: 1098 bp
ATGGCAGCTTTAAGATTCTACCACCATCTTTTAGTCGCTTCTCTATTTTCCTTGCGTATACTTACTCTCACCCCCACTGCTGCAGATACAAATGGTTATTGTACCACACAGAACTGGTCAAACCACGGTGGAGATTTGTTCAACACAAGACATGCCTCTAAGGAGACCAAGATCAGCCCCCAAAAGGTTTCAAAACTTCGCCTAAAGTGGAAGTTTTATGCAGGGGACCATATAACTGCAACGCCAGCAATTTATGGCAACAGCCTTTATTTTCCGAGCTGGAATGGCTGCATCTACGCAGTCAGAGCTTCCAATGGGTATGTCATTTGGAAGAAGAATTTGCTAAAGTTGACTGGGCTTAACACAACCGGTTTTGTTTATGCTGTCAACACCACAATATCAAGATCAACCCCGACAATTGCTGGTGATCGGGGTGAGCTCCTAATCTTTGGACTCTATGCACCTGCGGTTGTTGTTGCCGTTGAACGTTCAACTTGTGGGTTTAATGCTTCAGCTTACCCTCCTGGACCTAATGTGGATGCTGATTTTGGGGAAGCACCTATGATGCTTAGTGCACAAGTCAATGGGAGCAAGCTAGATTTAGTTGTTGCCGTTCAGAAAAGCGGGTTTGCATGGGCTCTAGATCGGAATAATGGCAGCCTTGTGTGGTCTACGTGGCATGGTGGAGGAGGAATTTGGGGAGCAGCTACTGATGCGAAAAGGGTATACACCAACATTGCTAATTCTGGTGCCAAAAATTTCACTCTCAAGCCATCGAACAAGGTAACGACTTCGGGTGGATGGGTGGCAATGGACTCTGGCAGTGGCGAGATTCTATGGTCAACAGCGAATCCCAGCAATGCAACTTCTTATGGACCAGTTAGCGTAGCTAATGATGTACTTTTTGGTGGATCCACAAGCCCAAAAGGGGAGATATACGCCATGGACGCCAAGACTGGCGAAGTTTTGTGGTCCTATGTCACCGGAGCAACCGTGTATGTTGGCATGTCCATAAGCAATGGTTGCATTTACATTGGCAATGGATATAGACCTCCATTTACTGCTGGAACCTCGTTGTTCGCCTTCTGTGTAACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PQQ PQQ_2 PQQ_3

Protein Analysis

365

Amino Acids

38.95

Weight (kDa)

9.22

Isoelectric Point (pI)

24.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PQQ_2 PF13360 200 - 326 1.1e-07 Outer membrane protein assembly factor BamB
PQQ_2 PF13360 267 - 341 5.4e-07 Outer membrane protein assembly factor BamB
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 472
Acc36I ACCTGC 1 cut(s) 472
AccB1I GGYRCC 1 cut(s) 749
AccI GTMKAC 3 cut(s) 58, 671, 726
AciI CCGC 2 cut(s) 467, 624
AclI AACGTT 1 cut(s) 487
AclWI GGATC 2 cut(s) 906, 919
AcsI RAATTY 3 cut(s) 337, 693, 757
AcuI CTGAAG 1 cut(s) 495
AcyI GRCGYC 1 cut(s) 948
AfaI GTAC 2 cut(s) 103, 900
AfiI CCNNNNNNNGG 2 cut(s) 184, 928
AgeI ACCGGT 1 cut(s) 368
AgsI TTSAA 4 cut(s) 142, 192, 485, 492
AjnI CCWGG 1 cut(s) 523
AluBI AGCT 8 cut(s) 8, 279, 308, 439, 515, 595, 707, 890
AluI AGCT 8 cut(s) 8, 279, 308, 439, 515, 595, 707, 890
Alw21I GWGCWC 2 cut(s) 441, 577
Alw26I GTCTC 1 cut(s) 158
Alw44I GTGCAC 1 cut(s) 573
AlwI GGATC 2 cut(s) 906, 919
AlwNI CAGNNNCTG 1 cut(s) 710
ApaLI GTGCAC 1 cut(s) 573
ApeKI GCWGC 5 cut(s) 5, 80, 288, 657, 704
ApoI RAATTY 3 cut(s) 337, 693, 757
AsiGI ACCGGT 1 cut(s) 368
AspS9I GGNCC 4 cut(s) 226, 527, 875, 972
AsuHPI GGTGA 4 cut(s) 61, 437, 446, 973
AvaII GGWCC 4 cut(s) 226, 527, 875, 972
BaeGI GKGCMC 1 cut(s) 577
BamHI GGATCC 1 cut(s) 911
BanI GGYRCC 1 cut(s) 749
BanII GRGCYC 2 cut(s) 441, 640
Bbv12I GWGCWC 2 cut(s) 441, 577
BbvI GCAGC 5 cut(s) 17, 67, 275, 669, 716
BccI CCATC 3 cut(s) 33, 781, 795
BceAI ACGGC 2 cut(s) 464, 596
BciT130I CCWGG 1 cut(s) 525
BcoDI GTCTC 1 cut(s) 158
BfaI CTAG 2 cut(s) 596, 641
BfmI CTRYAG 1 cut(s) 81
BfuAI ACCTGC 1 cut(s) 472
BisI GCNGC 5 cut(s) 6, 81, 289, 658, 705
BlsI GCNGC 5 cut(s) 7, 82, 290, 659, 706
Bme1390I CCNGG 1 cut(s) 525
Bme18I GGWCC 4 cut(s) 226, 527, 875, 972
BmgT120I GGNCC 4 cut(s) 226, 527, 875, 972
BmiI GGNNCC 4 cut(s) 227, 751, 913, 1069
BmrFI CCNGG 1 cut(s) 525
BmrI ACTGGG 1 cut(s) 363
BmsI GCATC 4 cut(s) 300, 529, 555, 703
BmuI ACTGGG 1 cut(s) 363
BpuEI CTTGAG 1 cut(s) 752
BsaAI YACGTR 1 cut(s) 675
BsaHI GRCGYC 1 cut(s) 948
BsaI GGTCTC 1 cut(s) 158
BsaJI CCNNGG 2 cut(s) 124, 942
BsaWI WCCGGW 2 cut(s) 368, 983
BsaXI ACNNNNNCTCC 2 cut(s) 978, 1008
Bsc4I CCNNNNNNNGG 2 cut(s) 184, 928
Bse118I RCCGGY 1 cut(s) 368
Bse1I ACTGG 4 cut(s) 119, 358, 878, 961
Bse3DI GCAATG 5 cut(s) 735, 816, 865, 1024, 1045
BseBI CCWGG 1 cut(s) 525
BseDI CCNNGG 2 cut(s) 124, 942
BseGI GGATG 2 cut(s) 544, 806
BseLI CCNNNNNNNGG 2 cut(s) 184, 928
BseMI GCAATG 5 cut(s) 735, 816, 865, 1024, 1045
BseNI ACTGG 4 cut(s) 119, 358, 878, 961
BseRI GAGGAG 1 cut(s) 702
BseSI GKGCMC 1 cut(s) 577
BseXI GCAGC 5 cut(s) 17, 67, 275, 669, 716
BseYI CCCAGC 1 cut(s) 854
BshNI GGYRCC 1 cut(s) 749
BshTI ACCGGT 1 cut(s) 368
BsiHKAI GWGCWC 2 cut(s) 441, 577
BsiSI CCGG 2 cut(s) 369, 984
BslFI GGGAC 1 cut(s) 239
BslI CCNNNNNNNGG 2 cut(s) 184, 928
BsmAI GTCTC 1 cut(s) 158
BsmFI GGGAC 1 cut(s) 239
Bso31I GGTCTC 1 cut(s) 158
Bsp1286I GDGCHC 3 cut(s) 441, 577, 640
Bsp143I GATC 5 cut(s) 171, 404, 427, 643, 911
Bsp19I CCATGG 1 cut(s) 942
BspACI CCGC 2 cut(s) 467, 624
BspLI GGNNCC 4 cut(s) 227, 751, 913, 1069
BspMAI CTGCAG 1 cut(s) 85
BspMI ACCTGC 1 cut(s) 472
BspPI GGATC 2 cut(s) 906, 919
BspT107I GGYRCC 1 cut(s) 749
BspTNI GGTCTC 1 cut(s) 158
BsrDI GCAATG 5 cut(s) 735, 816, 865, 1024, 1045
BsrFI RCCGGY 1 cut(s) 368
BsrI ACTGG 4 cut(s) 119, 358, 878, 961
BssAI RCCGGY 1 cut(s) 368
BssECI CCNNGG 2 cut(s) 124, 942
BssMI GATC 5 cut(s) 171, 404, 427, 643, 911
BssNAI GTATAC 2 cut(s) 59, 727
BssNI GRCGYC 1 cut(s) 948
BssT1I CCWWGG 1 cut(s) 942
Bst1107I GTATAC 2 cut(s) 59, 727
Bst2UI CCWGG 1 cut(s) 525
Bst4CI ACNGT 2 cut(s) 128, 994
BstACI GRCGYC 1 cut(s) 948
BstAPI GCANNNNNTGC 1 cut(s) 1023
BstBAI YACGTR 1 cut(s) 675
BstC8I GCNNGC 2 cut(s) 246, 593
BstDEI CTNAG 2 cut(s) 159, 569
BstDSI CCRYGG 2 cut(s) 124, 942
BstF5I GGATG 2 cut(s) 544, 806
BstKTI GATC 5 cut(s) 174, 407, 430, 646, 914
BstMAI GTCTC 1 cut(s) 158
BstMBI GATC 5 cut(s) 171, 404, 427, 643, 911
BstMWI GCNNNNNNNGC 6 cut(s) 245, 285, 305, 713, 947, 1023
BstNI CCWGG 1 cut(s) 525
BstNSI RCATGY 2 cut(s) 155, 1009
BstSCI CCNGG 1 cut(s) 523
BstSFI CTRYAG 1 cut(s) 81
BstSLI GKGCMC 1 cut(s) 577
BstV1I GCAGC 5 cut(s) 17, 67, 275, 669, 716
BstX2I RGATCY 1 cut(s) 911
BstYI RGATCY 1 cut(s) 911
BstZ17I GTATAC 2 cut(s) 59, 727
BtgI CCRYGG 2 cut(s) 124, 942
BtsCI GGATG 2 cut(s) 544, 806
BtsI GCAGTG 2 cut(s) 75, 829
BtsIMutI CAGTG 2 cut(s) 75, 829
BveI ACCTGC 1 cut(s) 472
Cac8I GCNNGC 2 cut(s) 246, 593
CaiI CAGNNNCTG 1 cut(s) 710
Cfr10I RCCGGY 1 cut(s) 368
Cfr13I GGNCC 4 cut(s) 226, 527, 875, 972
CseI GACGC 1 cut(s) 956
Csp6I GTAC 2 cut(s) 102, 899
CspAI ACCGGT 1 cut(s) 368
CviAII CATG 5 cut(s) 152, 633, 680, 943, 1006
CviQI GTAC 2 cut(s) 102, 899
DdeI CTNAG 2 cut(s) 159, 569
DpnI GATC 5 cut(s) 173, 406, 429, 645, 913
DpnII GATC 5 cut(s) 171, 404, 427, 643, 911
Ecl136II GAGCTC 1 cut(s) 439
Eco130I CCWWGG 1 cut(s) 942
Eco24I GRGCYC 2 cut(s) 441, 640
Eco31I GGTCTC 1 cut(s) 158
Eco47I GGWCC 4 cut(s) 226, 527, 875, 972
Eco53kI GAGCTC 1 cut(s) 439
Eco57I CTGAAG 1 cut(s) 495
EcoICRI GAGCTC 1 cut(s) 439
EcoRII CCWGG 1 cut(s) 523
EcoT14I CCWWGG 1 cut(s) 942
EcoT38I GRGCYC 2 cut(s) 441, 640
ErhI CCWWGG 1 cut(s) 942
FaeI CATG 5 cut(s) 155, 636, 683, 946, 1009
FaqI GGGAC 1 cut(s) 239
FatI CATG 5 cut(s) 151, 632, 679, 942, 1005
FauI CCCGC 1 cut(s) 617
FblI GTMKAC 3 cut(s) 58, 671, 726
Fnu4HI GCNGC 5 cut(s) 6, 81, 289, 658, 705
FokI GGATG 2 cut(s) 551, 813
FriOI GRGCYC 2 cut(s) 441, 640
Fsp4HI GCNGC 5 cut(s) 6, 81, 289, 658, 705
FspBI CTAG 2 cut(s) 596, 641
GluI GCNGC 5 cut(s) 6, 81, 289, 658, 705
GsaI CCCAGC 1 cut(s) 858
HapII CCGG 2 cut(s) 369, 984
HgaI GACGC 1 cut(s) 956
Hin1I GRCGYC 1 cut(s) 948
Hin1II CATG 5 cut(s) 155, 636, 683, 946, 1009
HincII GTYRAC 3 cut(s) 351, 388, 843
HindII GTYRAC 3 cut(s) 351, 388, 843
HinfI GANTC 5 cut(s) 15, 453, 815, 832, 850
HpaII CCGG 2 cut(s) 369, 984
HphI GGTGA 4 cut(s) 61, 437, 446, 973
Hpy166II GTNNAC 7 cut(s) 59, 351, 388, 575, 672, 727, 843
Hpy188I TCNGA 4 cut(s) 276, 305, 618, 648
Hpy188III TCNNGA 2 cut(s) 402, 641
Hpy8I GTNNAC 7 cut(s) 59, 351, 388, 575, 672, 727, 843
HpyAV CCTTC 1 cut(s) 1093
HpyCH4III ACNGT 2 cut(s) 128, 994
HpyCH4IV ACGT 2 cut(s) 487, 674
HpyCH4V TGCA 9 cut(s) 83, 221, 239, 291, 461, 575, 632, 863, 1026
HpyF10VI GCNNNNNNNGC 6 cut(s) 245, 285, 305, 713, 947, 1023
HpyF3I CTNAG 2 cut(s) 159, 569
HpySE526I ACGT 2 cut(s) 487, 674
Hsp92I GRCGYC 1 cut(s) 948
Hsp92II CATG 5 cut(s) 155, 636, 683, 946, 1009
Kzo9I GATC 5 cut(s) 171, 404, 427, 643, 911
LmnI GCTCC 4 cut(s) 444, 588, 701, 986
Lsp1109I GCAGC 5 cut(s) 17, 67, 275, 669, 716
LweI GCATC 4 cut(s) 300, 529, 555, 703
MaeI CTAG 2 cut(s) 596, 641
MaeII ACGT 2 cut(s) 487, 674
MaeIII GTNAC 3 cut(s) 784, 979, 1090
MalI GATC 5 cut(s) 173, 406, 429, 645, 913
MboI GATC 5 cut(s) 171, 404, 427, 643, 911
MboII GAAGA 2 cut(s) 343, 346
MfeI CAATTG 1 cut(s) 417
MflI RGATCY 1 cut(s) 911
MhlI GDGCHC 3 cut(s) 441, 577, 640
MluCI AATT 6 cut(s) 249, 337, 417, 693, 742, 757
MlyI GAGTC 2 cut(s) 447, 809
MnlI CCTC 6 cut(s) 166, 531, 680, 683, 1062, 1081
MseI TTAA 3 cut(s) 11, 360, 504
MspI CCGG 2 cut(s) 369, 984
MspR9I CCNGG 1 cut(s) 525
MunI CAATTG 1 cut(s) 417
MvaI CCWGG 1 cut(s) 525
MwoI GCNNNNNNNGC 6 cut(s) 245, 285, 305, 713, 947, 1023
NcoI CCATGG 1 cut(s) 942
NdeII GATC 5 cut(s) 171, 404, 427, 643, 911
NlaIII CATG 5 cut(s) 155, 636, 683, 946, 1009
NlaIV GGNNCC 4 cut(s) 227, 751, 913, 1069
NmuCI GTSAC 1 cut(s) 979
NspI RCATGY 2 cut(s) 155, 1009
PaqCI CACCTGC 1 cut(s) 472
PfeI GAWTC 3 cut(s) 15, 832, 850
PfoI TCCNGGA 1 cut(s) 523
PinAI ACCGGT 1 cut(s) 368
PkrI GCNGC 5 cut(s) 7, 82, 290, 659, 706
PleI GAGTC 2 cut(s) 447, 809
PpsI GAGTC 2 cut(s) 447, 809
Ppu21I YACGTR 1 cut(s) 675
Psp124BI GAGCTC 1 cut(s) 441
Psp1406I AACGTT 1 cut(s) 487
Psp6I CCWGG 1 cut(s) 523
PspFI CCCAGC 1 cut(s) 854
PspGI CCWGG 1 cut(s) 523
PspN4I GGNNCC 4 cut(s) 227, 751, 913, 1069
PspPI GGNCC 4 cut(s) 226, 527, 875, 972
PstI CTGCAG 1 cut(s) 85
PstNI CAGNNNCTG 1 cut(s) 710
PsuI RGATCY 1 cut(s) 911
RsaI GTAC 2 cut(s) 103, 900
RsaNI GTAC 2 cut(s) 102, 899
SacI GAGCTC 1 cut(s) 441
SaqAI TTAA 3 cut(s) 11, 360, 504
SatI GCNGC 5 cut(s) 6, 81, 289, 658, 705
Sau3AI GATC 5 cut(s) 171, 404, 427, 643, 911
Sau96I GGNCC 4 cut(s) 226, 527, 875, 972
SchI GAGTC 2 cut(s) 447, 809
ScrFI CCNGG 1 cut(s) 525
SduI GDGCHC 3 cut(s) 441, 577, 640
SfaNI GCATC 4 cut(s) 300, 529, 555, 703
SfcI CTRYAG 1 cut(s) 81
SinI GGWCC 4 cut(s) 226, 527, 875, 972
SmlI CTYRAG 1 cut(s) 767
SmoI CTYRAG 1 cut(s) 767
Sse9I AATT 6 cut(s) 249, 337, 417, 693, 742, 757
SsiI CCGC 2 cut(s) 467, 624
SspMI CTAG 2 cut(s) 596, 641
SstI GAGCTC 1 cut(s) 441
StyD4I CCNGG 1 cut(s) 523
StyI CCWWGG 1 cut(s) 942
TaaI ACNGT 2 cut(s) 128, 994
TaiI ACGT 2 cut(s) 490, 677
TaqI TCGA 1 cut(s) 776
TasI AATT 6 cut(s) 249, 337, 417, 693, 742, 757
TatI WGTACW 1 cut(s) 898
TfiI GAWTC 3 cut(s) 15, 832, 850
Tru1I TTAA 3 cut(s) 11, 360, 504
Tru9I TTAA 3 cut(s) 11, 360, 504
TscAI CASTG 2 cut(s) 82, 829
TseFI GTSAC 1 cut(s) 979
TseI GCWGC 5 cut(s) 5, 80, 288, 657, 704
Tsp45I GTSAC 1 cut(s) 979
TspRI CASTG 2 cut(s) 82, 829
VneI GTGCAC 1 cut(s) 573
VpaK11BI GGWCC 4 cut(s) 226, 527, 875, 972
XapI RAATTY 3 cut(s) 337, 693, 757
XbaI TCTAGA 1 cut(s) 640
XceI RCATGY 2 cut(s) 155, 1009
XmiI GTMKAC 3 cut(s) 58, 671, 726
XspI CTAG 2 cut(s) 596, 641
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.