Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0002870

Physical Location & Seq

Genomic Coordinates Reverse (-)

7447702 .. 7448419

Gene Structure 718 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g07560.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGTTTGCCATAAAGTCAGTTTTAGAGGCTTTTGATGAGGAAGAAGGGATTGAAGTGGCCTGGAGCAAAGTCAAGCCTGCGGACGATGCTGAGCTTCAGCGCTTGTTTTTTTCGGAGATTAATTGGCTCAAGTCTCTAAAACATGGTAAGATCATCAAGCTTTTCAGCTGGTGGGTCTCGGAAGATGGTGATAATGGTAAGAAGGATTTGAAGTATGACAATGTGTTTATTAATGGTTTCAATGGAGAGGTGAAGATTGGGGATTTCGGGATTTATAATGAGCTGGTGGATATCTATTCTTTTGGGCTGTGCTTGCTGGAAATGGTGACTTGTGAGTACCCTTATAAGGAGTGCCGAAGTCCTGCGCAGATATACAAGAAGGTTATATCTGGTGTGATGCCGGCTGCACTGAGTAATGTGAAGGATCCTCAAGTGAAGCAGTTCATTGAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009909 GO:0009911 GO:0009987 GO:0010228 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0035556 GO:0036211 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046777 GO:0048518 GO:0048573 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051239 GO:0051240 GO:0051716 GO:0061458 GO:0065007 GO:0071704 GO:0140096 GO:1901564 GO:2000026 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OSR1_C Pkinase

Protein Analysis

152

Amino Acids

17.32

Weight (kDa)

5.0

Isoelectric Point (pI)

32.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002870)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g07560
malus_domestica	MD07G1154000.v1.1
pyrus_communis	pycom14g14260 pycom16g16290
rosa_chinensis	RchiOBHm_Chr3g0469611 RchiOBHm_Chr5g0078081 RchiOBHm_Chr7g0208181
rosa_laevigata	RLG00000033831
rosa_multiflora	Rmu_co8062676.1_g000002 Rmu_sc0003108.1_g000027 Rmu_sc0006483.1_g000012 Rmu_sc0018944.1_g000001 Rmu_sc0022000.1_g000001 Rmu_sc0034052.1_g000001 Rmu_sc0041954.1_g000001
rosa_roxburghii	Rroxscaffold_1G00000580 Rroxscaffold_1G00006080 Rroxscaffold_1G00008040 Rroxscaffold_1G00008480 Rroxscaffold_1G00025750 Rroxscaffold_1G00025970 Rroxscaffold_1G00030650 Rroxscaffold_2G00092550 Rroxscaffold_3G00237550 Rroxscaffold_3G00245300 Rroxscaffold_4G00312850 Rroxscaffold_4G00312880 Rroxscaffold_4G00332520 Rroxscaffold_6G00411430
rosa_rugosa	Rorug06G0481400
rosa_samantha	Rh1CG136900 Rh2AG496900 Rh2CG482900 Rh3AG152300 Rh3CG167100 Rh5CG471900 Rh5CG472000 Rh7DG242000
rosa_wichuraiana	Rw7G010120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	276, 345
Acc16I	TGCGCA	1 cut(s)	366
AciI	CCGC	1 cut(s)	80
AclWI	GGATC	2 cut(s)	419, 432
AcuI	CTGAAG	1 cut(s)	80
AfaI	GTAC	1 cut(s)	338
AfeI	AGCGCT	1 cut(s)	101
AfiI	CCNNNNNNNGG	1 cut(s)	346
AgsI	TTSAA	3 cut(s)	53, 211, 241
AjnI	CCWGG	1 cut(s)	59
AluBI	AGCT	4 cut(s)	94, 160, 168, 283
AluI	AGCT	4 cut(s)	94, 160, 168, 283
Alw26I	GTCTC	2 cut(s)	138, 181
AlwI	GGATC	2 cut(s)	419, 432
Aor51HI	AGCGCT	1 cut(s)	101
AoxI	GGCC	1 cut(s)	57
ApeKI	GCWGC	1 cut(s)	404
AseI	ATTAAT	2 cut(s)	120, 231
Asp700I	GAANNNNTTC	1 cut(s)	440
AspLEI	GCGC	2 cut(s)	102, 367
AsuHPI	GGTGA	3 cut(s)	200, 262, 337
BamHI	GGATCC	1 cut(s)	424
BbvI	GCAGC	1 cut(s)	391
BccI	CCATC	1 cut(s)	179
BciT130I	CCWGG	1 cut(s)	61
BcoDI	GTCTC	2 cut(s)	138, 181
BfoI	RGCGCY	1 cut(s)	103
BisI	GCNGC	1 cut(s)	405
BlpI	GCTNAGC	1 cut(s)	90
BlsI	GCNGC	1 cut(s)	406
Bme1390I	CCNGG	1 cut(s)	61
BmiI	GGNNCC	1 cut(s)	426
BmrFI	CCNGG	1 cut(s)	61
BmsI	GCATC	2 cut(s)	76, 387
BpmI	CTGGAG	1 cut(s)	82
Bpu1102I	GCTNAGC	1 cut(s)	90
BpuEI	CTTGAG	2 cut(s)	113, 414
BsaI	GGTCTC	1 cut(s)	181
Bsc4I	CCNNNNNNNGG	1 cut(s)	346
Bse118I	RCCGGY	1 cut(s)	400
BseBI	CCWGG	1 cut(s)	61
BseLI	CCNNNNNNNGG	1 cut(s)	346
BseMII	CTCAG	2 cut(s)	81, 401
BseXI	GCAGC	1 cut(s)	391
BsgI	GTGCAG	1 cut(s)	390
BshFI	GGCC	1 cut(s)	59
BsiSI	CCGG	1 cut(s)	401
BslI	CCNNNNNNNGG	1 cut(s)	346
BsmAI	GTCTC	2 cut(s)	138, 181
BsnI	GGCC	1 cut(s)	59
Bso31I	GGTCTC	1 cut(s)	181
Bsp143I	GATC	2 cut(s)	150, 424
Bsp1720I	GCTNAGC	1 cut(s)	90
BspACI	CCGC	1 cut(s)	80
BspANI	GGCC	1 cut(s)	59
BspCNI	CTCAG	2 cut(s)	82, 402
BspLI	GGNNCC	1 cut(s)	426
BspPI	GGATC	2 cut(s)	419, 432
BspTNI	GGTCTC	1 cut(s)	181
BsrFI	RCCGGY	1 cut(s)	400
BssAI	RCCGGY	1 cut(s)	400
BssMI	GATC	2 cut(s)	150, 424
Bst2UI	CCWGG	1 cut(s)	61
BstC8I	GCNNGC	3 cut(s)	78, 314, 402
BstDEI	CTNAG	2 cut(s)	90, 410
BstH2I	RGCGCY	1 cut(s)	103
BstHHI	GCGC	2 cut(s)	102, 367
BstKTI	GATC	2 cut(s)	153, 427
BstMAI	GTCTC	2 cut(s)	138, 181
BstMBI	GATC	2 cut(s)	150, 424
BstMWI	GCNNNNNNNGC	2 cut(s)	86, 313
BstNI	CCWGG	1 cut(s)	61
BstSCI	CCNGG	1 cut(s)	59
BstV1I	GCAGC	1 cut(s)	391
BstX2I	RGATCY	1 cut(s)	424
BstYI	RGATCY	1 cut(s)	424
BsuRI	GGCC	1 cut(s)	59
BtsIMutI	CAGTG	1 cut(s)	407
Cac8I	GCNNGC	3 cut(s)	78, 314, 402
CfoI	GCGC	2 cut(s)	102, 367
Cfr10I	RCCGGY	1 cut(s)	400
Csp6I	GTAC	1 cut(s)	337
CviAII	CATG	1 cut(s)	143
CviQI	GTAC	1 cut(s)	337
DdeI	CTNAG	2 cut(s)	90, 410
DpnI	GATC	2 cut(s)	152, 426
DpnII	GATC	2 cut(s)	150, 424
Eco31I	GGTCTC	1 cut(s)	181
Eco32I	GATATC	1 cut(s)	292
Eco47III	AGCGCT	1 cut(s)	101
Eco57I	CTGAAG	1 cut(s)	80
EcoRII	CCWGG	1 cut(s)	59
EcoRV	GATATC	1 cut(s)	292
FaeI	CATG	1 cut(s)	146
FaiI	YATR	7 cut(s)	11, 144, 216, 276, 345, 373, 386
FatI	CATG	1 cut(s)	142
Fnu4HI	GCNGC	1 cut(s)	405
Fsp4HI	GCNGC	1 cut(s)	405
FspI	TGCGCA	1 cut(s)	366
GlaI	GCGC	2 cut(s)	101, 366
GluI	GCNGC	1 cut(s)	405
GsuI	CTGGAG	1 cut(s)	82
HaeII	RGCGCY	1 cut(s)	103
HaeIII	GGCC	1 cut(s)	59
HapII	CCGG	1 cut(s)	401
HhaI	GCGC	2 cut(s)	102, 367
Hin1II	CATG	1 cut(s)	146
Hin6I	GCGC	2 cut(s)	100, 365
HinP1I	GCGC	2 cut(s)	100, 365
HindIII	AAGCTT	1 cut(s)	158
HpaII	CCGG	1 cut(s)	401
HphI	GGTGA	3 cut(s)	200, 262, 337
Hpy188I	TCNGA	2 cut(s)	115, 181
Hpy188III	TCNNGA	1 cut(s)	268
HpyAV	CCTTC	4 cut(s)	38, 196, 373, 415
HpyCH4V	TGCA	1 cut(s)	407
HpyF10VI	GCNNNNNNNGC	2 cut(s)	86, 313
HpyF3I	CTNAG	2 cut(s)	90, 410
Hsp92II	CATG	1 cut(s)	146
HspAI	GCGC	2 cut(s)	100, 365
KroI	GCCGGC	1 cut(s)	400
KroNI	GCCGGC	1 cut(s)	402
Kzo9I	GATC	2 cut(s)	150, 424
LmnI	GCTCC	1 cut(s)	63
LpnPI	CCDG	9 cut(s)	46, 73, 90, 154, 269, 302, 375, 375, 414
Lsp1109I	GCAGC	1 cut(s)	391
LweI	GCATC	2 cut(s)	76, 387
MaeIII	GTNAC	1 cut(s)	325
MalI	GATC	2 cut(s)	152, 426
MboI	GATC	2 cut(s)	150, 424
MboII	GAAGA	3 cut(s)	53, 194, 265
MflI	RGATCY	1 cut(s)	424
MluCI	AATT	1 cut(s)	121
MnlI	CCTC	4 cut(s)	19, 31, 241, 438
MroNI	GCCGGC	1 cut(s)	400
MroXI	GAANNNNTTC	1 cut(s)	440
MseI	TTAA	2 cut(s)	120, 231
MspA1I	CMGCKG	1 cut(s)	168
MspI	CCGG	1 cut(s)	401
MspR9I	CCNGG	1 cut(s)	61
MvaI	CCWGG	1 cut(s)	61
MwoI	GCNNNNNNNGC	2 cut(s)	86, 313
NaeI	GCCGGC	1 cut(s)	402
NdeII	GATC	2 cut(s)	150, 424
NgoMIV	GCCGGC	1 cut(s)	400
NlaIII	CATG	1 cut(s)	146
NlaIV	GGNNCC	1 cut(s)	426
NmuCI	GTSAC	1 cut(s)	325
NsbI	TGCGCA	1 cut(s)	366
PdiI	GCCGGC	1 cut(s)	402
PdmI	GAANNNNTTC	1 cut(s)	440
PkrI	GCNGC	1 cut(s)	406
PshBI	ATTAAT	2 cut(s)	120, 231
PsiI	TTATAA	2 cut(s)	276, 345
Psp6I	CCWGG	1 cut(s)	59
PspGI	CCWGG	1 cut(s)	59
PspN4I	GGNNCC	1 cut(s)	426
PsuI	RGATCY	1 cut(s)	424
PvuII	CAGCTG	1 cut(s)	168
RsaI	GTAC	1 cut(s)	338
RsaNI	GTAC	1 cut(s)	337
SaqAI	TTAA	2 cut(s)	120, 231
SatI	GCNGC	1 cut(s)	405
Sau3AI	GATC	2 cut(s)	150, 424
ScrFI	CCNGG	1 cut(s)	61
SetI	ASST	6 cut(s)	96, 162, 170, 252, 285, 384
SfaNI	GCATC	2 cut(s)	76, 387
SmlI	CTYRAG	2 cut(s)	128, 429
SmoI	CTYRAG	2 cut(s)	128, 429
Sse9I	AATT	1 cut(s)	121
SsiI	CCGC	1 cut(s)	80
StyD4I	CCNGG	1 cut(s)	59
TasI	AATT	1 cut(s)	121
Tru1I	TTAA	2 cut(s)	120, 231
Tru9I	TTAA	2 cut(s)	120, 231
TscAI	CASTG	1 cut(s)	414
TseFI	GTSAC	1 cut(s)	325
TseI	GCWGC	1 cut(s)	404
Tsp45I	GTSAC	1 cut(s)	325
TspDTI	ATGAA	1 cut(s)	433
TspRI	CASTG	1 cut(s)	414
VspI	ATTAAT	2 cut(s)	120, 231
XmnI	GAANNNNTTC	1 cut(s)	440

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.