Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0002870

Physical Location & Seq

Genomic Coordinates Forward (+)

17020996 .. 17021902

Gene Structure 907 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g14260.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGCCACTGGATTTGTCGTCGGAGCAAGACACCGACGATGCTGATACCGAGTTCGTTGAGGTTGATCCCACTGGTCGATACGGTCGGTATAAAGAGGTTCTAGGAAAAGGGGCTTTCAAGAAAGTATATCGAGCATTTGATGAATTGGAAGGTTTAGAAGTAGCTTGGAATCAGGTTAAGGTGGCGGATCTATTGCGCAACTCTGAAGATTTAGGGCGGCTTTATTCGGAAGTTCATTTGCTTAAGACTTTAAAGCACAAGAACATAATTAAGTTTTACAATTCGTGGGTCGATGCCAAGCATGAGAACATCAACATTATTACAGAGATTTTCACCTCGGGAACTTTACGACAGTACCGGAGAAAGCATAAGCATGTTGATTTGAGGGCGTTGAAGAAATGGTCTAGGCAGATCGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OSR1_C Pkinase

Protein Analysis

140

Amino Acids

16.34

Weight (kDa)

8.73

Isoelectric Point (pI)

35.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0002870)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g07560
malus_domestica	MD07G1154000.v1.1
pyrus_communis	pycom14g14260 pycom16g16290
rosa_chinensis	RchiOBHm_Chr3g0469611 RchiOBHm_Chr5g0078081 RchiOBHm_Chr7g0208181
rosa_laevigata	RLG00000033831
rosa_multiflora	Rmu_co8062676.1_g000002 Rmu_sc0003108.1_g000027 Rmu_sc0006483.1_g000012 Rmu_sc0018944.1_g000001 Rmu_sc0022000.1_g000001 Rmu_sc0034052.1_g000001 Rmu_sc0041954.1_g000001
rosa_roxburghii	Rroxscaffold_1G00000580 Rroxscaffold_1G00006080 Rroxscaffold_1G00008040 Rroxscaffold_1G00008480 Rroxscaffold_1G00025750 Rroxscaffold_1G00025970 Rroxscaffold_1G00030650 Rroxscaffold_2G00092550 Rroxscaffold_3G00237550 Rroxscaffold_3G00245300 Rroxscaffold_4G00312850 Rroxscaffold_4G00312880 Rroxscaffold_4G00332520 Rroxscaffold_6G00411430
rosa_rugosa	Rorug06G0481400
rosa_samantha	Rh1CG136900 Rh2AG496900 Rh2CG482900 Rh3AG152300 Rh3CG167100 Rh5CG471900 Rh5CG472000 Rh7DG242000
rosa_wichuraiana	Rw7G010120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	197
AciI	CCGC	2 cut(s)	185, 217
AclWI	GGATC	2 cut(s)	59, 195
AcuI	CTGAAG	1 cut(s)	225
AfaI	GTAC	1 cut(s)	356
AflII	CTTAAG	1 cut(s)	242
AgsI	TTSAA	2 cut(s)	118, 394
AluBI	AGCT	1 cut(s)	164
AluI	AGCT	1 cut(s)	164
AlwI	GGATC	2 cut(s)	59, 195
Ama87I	CYCGRG	1 cut(s)	337
AspLEI	GCGC	1 cut(s)	198
AsuHPI	GGTGA	1 cut(s)	325
AvaI	CYCGRG	1 cut(s)	337
BaeI	ACNNNNGTAYC	2 cut(s)	338, 371
BfaI	CTAG	2 cut(s)	101, 405
BfrI	CTTAAG	1 cut(s)	242
BisI	GCNGC	1 cut(s)	218
BlsI	GCNGC	1 cut(s)	219
BmeT110I	CYCGRG	1 cut(s)	337
BmsI	GCATC	2 cut(s)	28, 283
BsaJI	CCNNGG	1 cut(s)	336
BsaWI	WCCGGW	1 cut(s)	357
Bse1I	ACTGG	2 cut(s)	12, 76
BseDI	CCNNGG	1 cut(s)	336
BseNI	ACTGG	2 cut(s)	12, 76
Bsh1285I	CGRYCG	1 cut(s)	85
BsiEI	CGRYCG	1 cut(s)	85
BsiHKCI	CYCGRG	1 cut(s)	337
BsiSI	CCGG	1 cut(s)	358
BsoBI	CYCGRG	1 cut(s)	337
Bsp143I	GATC	3 cut(s)	64, 187, 411
BspACI	CCGC	2 cut(s)	185, 217
BspPI	GGATC	2 cut(s)	59, 195
BspTI	CTTAAG	1 cut(s)	242
BsrI	ACTGG	2 cut(s)	12, 76
BssECI	CCNNGG	1 cut(s)	336
BssMI	GATC	3 cut(s)	64, 187, 411
Bst4CI	ACNGT	2 cut(s)	83, 354
BstAFI	CTTAAG	1 cut(s)	242
BstHHI	GCGC	1 cut(s)	198
BstKTI	GATC	3 cut(s)	67, 190, 414
BstMBI	GATC	3 cut(s)	64, 187, 411
BstMCI	CGRYCG	1 cut(s)	85
BstNSI	RCATGY	1 cut(s)	377
BstX2I	RGATCY	1 cut(s)	187
BstYI	RGATCY	1 cut(s)	187
BtsIMutI	CAGTG	2 cut(s)	5, 69
CfoI	GCGC	1 cut(s)	198
Csp6I	GTAC	1 cut(s)	355
CspCI	CAANNNNNGTGG	1 cut(s)	29
CviAII	CATG	2 cut(s)	302, 374
CviJI	RGCY	3 cut(s)	113, 164, 220
CviKI_1	RGCY	3 cut(s)	113, 164, 220
CviQI	GTAC	1 cut(s)	355
DpnI	GATC	3 cut(s)	66, 189, 413
DpnII	GATC	3 cut(s)	64, 187, 411
DraI	TTTAAA	1 cut(s)	252
EciI	GGCGGA	1 cut(s)	200
Eco57I	CTGAAG	1 cut(s)	225
Eco88I	CYCGRG	1 cut(s)	337
FaeI	CATG	2 cut(s)	305, 377
FaiI	YATR	6 cut(s)	90, 127, 266, 303, 369, 375
FatI	CATG	2 cut(s)	301, 373
Fnu4HI	GCNGC	1 cut(s)	218
Fsp4HI	GCNGC	1 cut(s)	218
FspBI	CTAG	2 cut(s)	101, 405
FspI	TGCGCA	1 cut(s)	197
GlaI	GCGC	1 cut(s)	197
GluI	GCNGC	1 cut(s)	218
HapII	CCGG	1 cut(s)	358
HhaI	GCGC	1 cut(s)	198
Hin1II	CATG	2 cut(s)	305, 377
Hin6I	GCGC	1 cut(s)	196
HinP1I	GCGC	1 cut(s)	196
HinfI	GANTC	1 cut(s)	169
HpaII	CCGG	1 cut(s)	358
HphI	GGTGA	1 cut(s)	325
Hpy188I	TCNGA	3 cut(s)	22, 205, 229
Hpy188III	TCNNGA	2 cut(s)	118, 339
Hpy99I	CGWCG	2 cut(s)	22, 38
HpyAV	CCTTC	1 cut(s)	143
HpyCH4III	ACNGT	2 cut(s)	83, 354
Hsp92II	CATG	2 cut(s)	305, 377
HspAI	GCGC	1 cut(s)	196
Kzo9I	GATC	3 cut(s)	64, 187, 411
LmnI	GCTCC	1 cut(s)	22
LpnPI	CCDG	3 cut(s)	57, 158, 371
LweI	GCATC	2 cut(s)	28, 283
MaeI	CTAG	2 cut(s)	101, 405
MalI	GATC	3 cut(s)	66, 189, 413
MboI	GATC	3 cut(s)	64, 187, 411
MboII	GAAGA	2 cut(s)	218, 406
MflI	RGATCY	1 cut(s)	187
MluCI	AATT	3 cut(s)	143, 267, 280
MnlI	CCTC	4 cut(s)	52, 88, 346, 378
MseI	TTAA	4 cut(s)	177, 243, 251, 270
MslI	CAYNNNNRTG	1 cut(s)	372
MspCI	CTTAAG	1 cut(s)	242
MspI	CCGG	1 cut(s)	358
NdeII	GATC	3 cut(s)	64, 187, 411
NlaIII	CATG	2 cut(s)	305, 377
NsbI	TGCGCA	1 cut(s)	197
NspI	RCATGY	1 cut(s)	377
PfeI	GAWTC	1 cut(s)	169
PkrI	GCNGC	1 cut(s)	219
PsuI	RGATCY	1 cut(s)	187
RsaI	GTAC	1 cut(s)	356
RsaNI	GTAC	1 cut(s)	355
RseI	CAYNNNNRTG	1 cut(s)	372
SaqAI	TTAA	4 cut(s)	177, 243, 251, 270
SatI	GCNGC	1 cut(s)	218
Sau3AI	GATC	3 cut(s)	64, 187, 411
SetI	ASST	7 cut(s)	63, 99, 154, 166, 177, 183, 338
SfaNI	GCATC	2 cut(s)	28, 283
SmiMI	CAYNNNNRTG	1 cut(s)	372
SmlI	CTYRAG	1 cut(s)	242
SmoI	CTYRAG	1 cut(s)	242
Sse9I	AATT	3 cut(s)	143, 267, 280
SsiI	CCGC	2 cut(s)	185, 217
SspMI	CTAG	2 cut(s)	101, 405
TaaI	ACNGT	2 cut(s)	83, 354
TaqI	TCGA	3 cut(s)	76, 130, 291
TasI	AATT	3 cut(s)	143, 267, 280
TauI	GCSGC	1 cut(s)	220
TfiI	GAWTC	1 cut(s)	169
Tru1I	TTAA	4 cut(s)	177, 243, 251, 270
Tru9I	TTAA	4 cut(s)	177, 243, 251, 270
TscAI	CASTG	2 cut(s)	12, 76
TspDTI	ATGAA	2 cut(s)	156, 224
TspRI	CASTG	2 cut(s)	12, 76
Vha464I	CTTAAG	1 cut(s)	242
XceI	RCATGY	1 cut(s)	377
XspI	CTAG	2 cut(s)	101, 405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.