Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003108.1

Orthogroup ID

OG0002870

Physical Location & Seq

Genomic Coordinates Reverse (-)

100488 .. 104772

Gene Structure 4285 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003108.1_g000027.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

atgcctcaggatttgccgtcggaccaggaaacggacgatgccgaagctgagttcgttgaaattgatccctctggtcgttacggacggtataaagaggttttaggcaaaggggctttcaagaaagtatatagagcgtttgatgaattggaaggaattgaagtagcttggaaccaagttaaggtggcagatctattgcgcaactctgaagatttggagcgcctttattcggaagttcatttgctcaagactttgaagcacaagaacattattaagttttacaactcttgggttgataccaagcatgaaaatatcaacttcattacagagattttcacttcgggaaacttgaggcaataccggaggaaacataagcacgttgatttgagggcactaaaaaagtggtctaggcagatcttagaaggccttctgtatcttcaccggcatgaccccccagttattcaccgagatttgaagtgtgacaacatttttgtcaatgggaaccagggtgaggtgaaaattggtgacttaggactggctgctattcttcgccaggctcgttcagctcacagtgttattggtactcctgagtttatggcgccagagctttatgaagaggaatataatgagcttgttgacatttatgcctttggcatgtgcttattagagttggtgacctttgagtatccttatgttgagtgtactaatgctgctcagatattcaagaaagtgacatcagctgagattggaaagcaggacaagcagcaggtcatatgggatggtcatgctggaagcactcgccgcgcaacaaatcaagccatgtcacagaatgccaatggaggtgataaaactgatgttgtgaacaatgaggcaaggaaccttcctggtccagcgagaccttcagttcttcctcttccaccacctggtgttcttgccgttaatcttctgagtgttcctgcaaacacagttcagtatgcaggtacaaatagcagtgatttccctgtccgatttccattggttaagactactatgcctccgtcagtgtttatgtctgcagctagtatacctgtacctcctccacctgtatctgagtttacaaccatgcaaatggctaattacacgaattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OSR1_C Pkinase

Protein Analysis

374

Amino Acids

42.13

Weight (kDa)

5.97

Isoelectric Point (pI)

49.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002870)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g07560
malus_domestica	MD07G1154000.v1.1
pyrus_communis	pycom14g14260 pycom16g16290
rosa_chinensis	RchiOBHm_Chr3g0469611 RchiOBHm_Chr5g0078081 RchiOBHm_Chr7g0208181
rosa_laevigata	RLG00000033831
rosa_multiflora	Rmu_co8062676.1_g000002 Rmu_sc0003108.1_g000027 Rmu_sc0006483.1_g000012 Rmu_sc0018944.1_g000001 Rmu_sc0022000.1_g000001 Rmu_sc0034052.1_g000001 Rmu_sc0041954.1_g000001
rosa_roxburghii	Rroxscaffold_1G00000580 Rroxscaffold_1G00006080 Rroxscaffold_1G00008040 Rroxscaffold_1G00008480 Rroxscaffold_1G00025750 Rroxscaffold_1G00025970 Rroxscaffold_1G00030650 Rroxscaffold_2G00092550 Rroxscaffold_3G00237550 Rroxscaffold_3G00245300 Rroxscaffold_4G00312850 Rroxscaffold_4G00312880 Rroxscaffold_4G00332520 Rroxscaffold_6G00411430
rosa_rugosa	Rorug06G0481400
rosa_samantha	Rh1CG136900 Rh2AG496900 Rh2CG482900 Rh3AG152300 Rh3CG167100 Rh5CG471900 Rh5CG472000 Rh7DG242000
rosa_wichuraiana	Rw7G010120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	197
Acc36I	ACCTGC	2 cut(s)	754, 965
AccB1I	GGYRCC	1 cut(s)	595
AccB7I	CCANNNNNTGG	1 cut(s)	920
AccI	GTMKAC	1 cut(s)	1060
AccII	CGCG	1 cut(s)	801
AciI	CCGC	1 cut(s)	799
AclWI	GGATC	1 cut(s)	59
AcuI	CTGAAG	2 cut(s)	225, 882
AcyI	GRCGYC	1 cut(s)	596
AdeI	CACNNNGTG	1 cut(s)	923
AfaI	GTAC	4 cut(s)	580, 700, 979, 1068
AfiI	CCNNNNNNNGG	5 cut(s)	31, 178, 226, 508, 920
AgsI	TTSAA	6 cut(s)	59, 118, 158, 253, 472, 721
AjnI	CCWGG	5 cut(s)	24, 501, 549, 880, 919
AluBI	AGCT	7 cut(s)	47, 164, 563, 604, 628, 737, 1055
AluI	AGCT	7 cut(s)	47, 164, 563, 604, 628, 737, 1055
Alw26I	GTCTC	1 cut(s)	886
AlwI	GGATC	1 cut(s)	59
AoxI	GGCC	1 cut(s)	421
ApeKI	GCWGC	4 cut(s)	536, 707, 760, 1052
ArsI	GACNNNNNNTTYG	2 cut(s)	470, 502
Asp700I	GAANNNNTTC	1 cut(s)	423
AspLEI	GCGC	4 cut(s)	198, 219, 598, 803
AspS9I	GGNCC	2 cut(s)	22, 884
AsuHPI	GGTGA	7 cut(s)	428, 452, 518, 523, 533, 682, 851
AvaII	GGWCC	2 cut(s)	22, 884
AxyI	CCTNAGG	1 cut(s)	6
BaeGI	GKGCMC	1 cut(s)	391
BanI	GGYRCC	1 cut(s)	595
BbvI	GCAGC	4 cut(s)	523, 694, 772, 1064
BccI	CCATC	1 cut(s)	770
BceAI	ACGGC	1 cut(s)	917
BciT130I	CCWGG	5 cut(s)	26, 503, 551, 882, 921
BciVI	GTATCC	1 cut(s)	693
BcoDI	GTCTC	1 cut(s)	886
BfaI	CTAG	2 cut(s)	405, 1056
BfmI	CTRYAG	1 cut(s)	1050
BfoI	RGCGCY	2 cut(s)	220, 599
BfuAI	ACCTGC	2 cut(s)	754, 965
BfuI	GTATCC	1 cut(s)	693
BglII	AGATCT	2 cut(s)	187, 411
BisI	GCNGC	5 cut(s)	537, 708, 761, 799, 1053
BlsI	GCNGC	5 cut(s)	538, 709, 762, 800, 1054
Bme1390I	CCNGG	5 cut(s)	26, 503, 551, 882, 921
Bme18I	GGWCC	2 cut(s)	22, 884
BmgT120I	GGNCC	2 cut(s)	22, 884
BmiI	GGNNCC	4 cut(s)	170, 500, 597, 875
BmrFI	CCNGG	5 cut(s)	26, 503, 551, 882, 921
BmrI	ACTGGG	1 cut(s)	446
BmsI	GCATC	1 cut(s)	28
BmuI	ACTGGG	1 cut(s)	446
BpuEI	CTTGAG	2 cut(s)	227, 367
BsaHI	GRCGYC	1 cut(s)	596
BsaI	GGTCTC	1 cut(s)	886
BsaJI	CCNNGG	1 cut(s)	502
BsaWI	WCCGGW	1 cut(s)	357
BsaXI	ACNNNNNCTCC	2 cut(s)	1015, 1045
Bsc4I	CCNNNNNNNGG	5 cut(s)	31, 178, 226, 508, 920
Bse118I	RCCGGY	1 cut(s)	438
Bse1I	ACTGG	2 cut(s)	452, 537
Bse21I	CCTNAGG	1 cut(s)	6
BseBI	CCWGG	5 cut(s)	26, 503, 551, 882, 921
BseDI	CCNNGG	1 cut(s)	502
BseGI	GGATG	1 cut(s)	781
BseLI	CCNNNNNNNGG	5 cut(s)	31, 178, 226, 508, 920
BseMII	CTCAG	7 cut(s)	20, 39, 576, 725, 729, 935, 1077
BseNI	ACTGG	2 cut(s)	452, 537
BseRI	GAGGAG	1 cut(s)	1062
BseSI	GKGCMC	1 cut(s)	391
BseXI	GCAGC	4 cut(s)	523, 694, 772, 1064
Bsh1236I	CGCG	1 cut(s)	801
BshFI	GGCC	1 cut(s)	423
BshNI	GGYRCC	1 cut(s)	595
BsiSI	CCGG	2 cut(s)	358, 439
BslI	CCNNNNNNNGG	5 cut(s)	31, 178, 226, 508, 920
BsmAI	GTCTC	1 cut(s)	886
BsmI	GAATGC	1 cut(s)	832
BsnI	GGCC	1 cut(s)	423
Bso31I	GGTCTC	1 cut(s)	886
Bsp1286I	GDGCHC	1 cut(s)	391
Bsp143I	GATC	3 cut(s)	64, 187, 411
BspACI	CCGC	1 cut(s)	799
BspANI	GGCC	1 cut(s)	423
BspCNI	CTCAG	7 cut(s)	19, 40, 577, 724, 730, 936, 1078
BspFNI	CGCG	1 cut(s)	801
BspLI	GGNNCC	4 cut(s)	170, 500, 597, 875
BspMAI	CTGCAG	1 cut(s)	1054
BspMI	ACCTGC	2 cut(s)	754, 965
BspPI	GGATC	1 cut(s)	59
BspT107I	GGYRCC	1 cut(s)	595
BspTNI	GGTCTC	1 cut(s)	886
BsrFI	RCCGGY	1 cut(s)	438
BsrI	ACTGG	2 cut(s)	452, 537
BssAI	RCCGGY	1 cut(s)	438
BssECI	CCNNGG	1 cut(s)	502
BssMI	GATC	3 cut(s)	64, 187, 411
BssNAI	GTATAC	1 cut(s)	1061
BssNI	GRCGYC	1 cut(s)	596
Bst1107I	GTATAC	1 cut(s)	1061
Bst2UI	CCWGG	5 cut(s)	26, 503, 551, 882, 921
Bst4CI	ACNGT	3 cut(s)	87, 569, 964
Bst6I	CTCTTC	2 cut(s)	606, 915
BstACI	GRCGYC	1 cut(s)	596
BstDEI	CTNAG	9 cut(s)	6, 48, 415, 526, 585, 711, 738, 944, 1086
BstEII	GGTNACC	1 cut(s)	670
BstF5I	GGATG	1 cut(s)	781
BstFNI	CGCG	1 cut(s)	801
BstH2I	RGCGCY	2 cut(s)	220, 599
BstHHI	GCGC	4 cut(s)	198, 219, 598, 803
BstKTI	GATC	3 cut(s)	67, 190, 414
BstMAI	GTCTC	1 cut(s)	886
BstMBI	GATC	3 cut(s)	64, 187, 411
BstMWI	GCNNNNNNNGC	3 cut(s)	560, 757, 798
BstNI	CCWGG	5 cut(s)	26, 503, 551, 882, 921
BstNSI	RCATGY	1 cut(s)	655
BstPI	GGTNACC	1 cut(s)	670
BstSCI	CCNGG	5 cut(s)	24, 501, 549, 880, 919
BstSFI	CTRYAG	1 cut(s)	1050
BstSLI	GKGCMC	1 cut(s)	391
BstUI	CGCG	1 cut(s)	801
BstV1I	GCAGC	4 cut(s)	523, 694, 772, 1064
BstX2I	RGATCY	2 cut(s)	187, 411
BstXI	CCANNNNNNTGG	1 cut(s)	1105
BstYI	RGATCY	2 cut(s)	187, 411
BstZ17I	GTATAC	1 cut(s)	1061
Bsu36I	CCTNAGG	1 cut(s)	6
BsuI	GTATCC	1 cut(s)	693
BsuRI	GGCC	1 cut(s)	423
BtsCI	GGATG	1 cut(s)	781
BtsI	GCAGTG	1 cut(s)	994
BtsIMutI	CAGTG	3 cut(s)	574, 994, 1044
BveI	ACCTGC	2 cut(s)	754, 965
CfoI	GCGC	4 cut(s)	198, 219, 598, 803
Cfr10I	RCCGGY	1 cut(s)	438
Cfr13I	GGNCC	2 cut(s)	22, 884
CsiI	ACCWGGT	1 cut(s)	919
Csp6I	GTAC	4 cut(s)	579, 699, 978, 1067
CviAII	CATG	6 cut(s)	302, 443, 652, 782, 817, 1099
CviQI	GTAC	4 cut(s)	579, 699, 978, 1067
DdeI	CTNAG	9 cut(s)	6, 48, 415, 526, 585, 711, 738, 944, 1086
DinI	GGCGCC	1 cut(s)	597
DpnI	GATC	3 cut(s)	66, 189, 413
DpnII	GATC	3 cut(s)	64, 187, 411
DraIII	CACNNNGTG	1 cut(s)	923
Eam1104I	CTCTTC	2 cut(s)	606, 915
EarI	CTCTTC	2 cut(s)	606, 915
Eco147I	AGGCCT	1 cut(s)	423
Eco31I	GGTCTC	1 cut(s)	886
Eco47I	GGWCC	2 cut(s)	22, 884
Eco57I	CTGAAG	2 cut(s)	225, 882
Eco81I	CCTNAGG	1 cut(s)	6
Eco91I	GGTNACC	1 cut(s)	670
EcoO65I	GGTNACC	1 cut(s)	670
EcoRII	CCWGG	5 cut(s)	24, 501, 549, 880, 919
EgeI	GGCGCC	1 cut(s)	597
EheI	GGCGCC	1 cut(s)	597
FaeI	CATG	6 cut(s)	305, 446, 655, 785, 820, 1102
FatI	CATG	6 cut(s)	301, 442, 651, 781, 816, 1098
FauNDI	CATATG	1 cut(s)	770
FblI	GTMKAC	1 cut(s)	1060
Fnu4HI	GCNGC	5 cut(s)	537, 708, 761, 799, 1053
FokI	GGATG	1 cut(s)	788
Fsp4HI	GCNGC	5 cut(s)	537, 708, 761, 799, 1053
FspBI	CTAG	2 cut(s)	405, 1056
FspI	TGCGCA	1 cut(s)	197
GlaI	GCGC	4 cut(s)	197, 218, 597, 802
GluI	GCNGC	5 cut(s)	537, 708, 761, 799, 1053
HaeII	RGCGCY	2 cut(s)	220, 599
HaeIII	GGCC	1 cut(s)	423
HapII	CCGG	2 cut(s)	358, 439
HhaI	GCGC	4 cut(s)	198, 219, 598, 803
Hin1I	GRCGYC	1 cut(s)	596
Hin1II	CATG	6 cut(s)	305, 446, 655, 785, 820, 1102
Hin6I	GCGC	4 cut(s)	196, 217, 596, 801
HinP1I	GCGC	4 cut(s)	196, 217, 596, 801
HincII	GTYRAC	1 cut(s)	634
HindII	GTYRAC	1 cut(s)	634
HpaII	CCGG	2 cut(s)	358, 439
HphI	GGTGA	7 cut(s)	428, 452, 518, 523, 533, 682, 851
Hpy166II	GTNNAC	5 cut(s)	634, 699, 859, 1061, 1092
Hpy188I	TCNGA	7 cut(s)	22, 205, 229, 714, 945, 1004, 1087
Hpy188III	TCNNGA	6 cut(s)	8, 118, 244, 339, 584, 721
Hpy8I	GTNNAC	5 cut(s)	634, 699, 859, 1061, 1092
Hpy99I	CGWCG	1 cut(s)	22
HpyAV	CCTTC	5 cut(s)	143, 413, 434, 887, 906
HpyCH4III	ACNGT	3 cut(s)	87, 569, 964
HpyCH4IV	ACGT	1 cut(s)	375
HpyCH4V	TGCA	4 cut(s)	956, 974, 1052, 1102
HpyF10VI	GCNNNNNNNGC	3 cut(s)	560, 757, 798
HpyF3I	CTNAG	9 cut(s)	6, 48, 415, 526, 585, 711, 738, 944, 1086
HpySE526I	ACGT	1 cut(s)	375
Hsp92I	GRCGYC	1 cut(s)	596
Hsp92II	CATG	6 cut(s)	305, 446, 655, 785, 820, 1102
HspAI	GCGC	4 cut(s)	196, 217, 596, 801
KasI	GGCGCC	1 cut(s)	595
Kzo9I	GATC	3 cut(s)	64, 187, 411
LmnI	GCTCC	1 cut(s)	214
Lsp1109I	GCAGC	4 cut(s)	523, 694, 772, 1064
LweI	GCATC	1 cut(s)	28
MabI	ACCWGGT	1 cut(s)	919
MaeI	CTAG	2 cut(s)	405, 1056
MaeII	ACGT	1 cut(s)	375
MaeIII	GTNAC	6 cut(s)	77, 476, 521, 670, 727, 819
MalI	GATC	3 cut(s)	66, 189, 413
MboI	GATC	3 cut(s)	64, 187, 411
MboII	GAAGA	7 cut(s)	218, 425, 536, 623, 896, 902, 932
MflI	RGATCY	2 cut(s)	187, 411
MhlI	GDGCHC	1 cut(s)	391
MluCI	AATT	6 cut(s)	60, 143, 153, 516, 1111, 1120
Mly113I	GGCGCC	1 cut(s)	596
MroXI	GAANNNNTTC	1 cut(s)	423
MseI	TTAA	4 cut(s)	177, 270, 936, 1017
MslI	CAYNNNNRTG	2 cut(s)	441, 1103
MspA1I	CMGCKG	1 cut(s)	737
MspI	CCGG	2 cut(s)	358, 439
MspR9I	CCNGG	5 cut(s)	26, 503, 551, 882, 921
Mva1269I	GAATGC	1 cut(s)	832
MvaI	CCWGG	5 cut(s)	26, 503, 551, 882, 921
MvnI	CGCG	1 cut(s)	801
MwoI	GCNNNNNNNGC	3 cut(s)	560, 757, 798
NarI	GGCGCC	1 cut(s)	596
NdeI	CATATG	1 cut(s)	770
NdeII	GATC	3 cut(s)	64, 187, 411
NlaIII	CATG	6 cut(s)	305, 446, 655, 785, 820, 1102
NlaIV	GGNNCC	4 cut(s)	170, 500, 597, 875
NmuCI	GTSAC	5 cut(s)	476, 521, 670, 727, 819
NsbI	TGCGCA	1 cut(s)	197
NspI	RCATGY	1 cut(s)	655
PceI	AGGCCT	1 cut(s)	423
PcsI	WCGNNNNNNNCGW	1 cut(s)	553
PctI	GAATGC	1 cut(s)	832
PdmI	GAANNNNTTC	1 cut(s)	423
PflMI	CCANNNNNTGG	1 cut(s)	920
PkrI	GCNGC	5 cut(s)	538, 709, 762, 800, 1054
PluTI	GGCGCC	1 cut(s)	599
Psp6I	CCWGG	5 cut(s)	24, 501, 549, 880, 919
PspEI	GGTNACC	1 cut(s)	670
PspGI	CCWGG	5 cut(s)	24, 501, 549, 880, 919
PspN4I	GGNNCC	4 cut(s)	170, 500, 597, 875
PspPI	GGNCC	2 cut(s)	22, 884
PstI	CTGCAG	1 cut(s)	1054
PsuI	RGATCY	2 cut(s)	187, 411
PvuII	CAGCTG	1 cut(s)	737
RsaI	GTAC	4 cut(s)	580, 700, 979, 1068
RsaNI	GTAC	4 cut(s)	579, 699, 978, 1067
RseI	CAYNNNNRTG	2 cut(s)	441, 1103
SaqAI	TTAA	4 cut(s)	177, 270, 936, 1017
SatI	GCNGC	5 cut(s)	537, 708, 761, 799, 1053
Sau3AI	GATC	3 cut(s)	64, 187, 411
Sau96I	GGNCC	2 cut(s)	22, 884
ScrFI	CCNGG	5 cut(s)	26, 503, 551, 882, 921
SduI	GDGCHC	1 cut(s)	391
SexAI	ACCWGGT	1 cut(s)	919
SfaNI	GCATC	1 cut(s)	28
SfcI	CTRYAG	1 cut(s)	1050
SfoI	GGCGCC	1 cut(s)	597
SinI	GGWCC	2 cut(s)	22, 884
SmiMI	CAYNNNNRTG	2 cut(s)	441, 1103
SmlI	CTYRAG	2 cut(s)	242, 346
SmoI	CTYRAG	2 cut(s)	242, 346
Sse9I	AATT	6 cut(s)	60, 143, 153, 516, 1111, 1120
SseBI	AGGCCT	1 cut(s)	423
SsiI	CCGC	1 cut(s)	799
SspDI	GGCGCC	1 cut(s)	595
SspMI	CTAG	2 cut(s)	405, 1056
StuI	AGGCCT	1 cut(s)	423
StyD4I	CCNGG	5 cut(s)	24, 501, 549, 880, 919
TaaI	ACNGT	3 cut(s)	87, 569, 964
TaiI	ACGT	1 cut(s)	378
TasI	AATT	6 cut(s)	60, 143, 153, 516, 1111, 1120
TatI	WGTACW	1 cut(s)	698
TauI	GCSGC	1 cut(s)	801
Tru1I	TTAA	4 cut(s)	177, 270, 936, 1017
Tru9I	TTAA	4 cut(s)	177, 270, 936, 1017
TscAI	CASTG	3 cut(s)	574, 994, 1044
TseFI	GTSAC	5 cut(s)	476, 521, 670, 727, 819
TseI	GCWGC	4 cut(s)	536, 707, 760, 1052
Tsp45I	GTSAC	5 cut(s)	476, 521, 670, 727, 819
TspDTI	ATGAA	5 cut(s)	156, 224, 307, 318, 624
TspGWI	ACGGA	3 cut(s)	47, 96, 1023
TspRI	CASTG	3 cut(s)	574, 994, 1044
Van91I	CCANNNNNTGG	1 cut(s)	920
VpaK11BI	GGWCC	2 cut(s)	22, 884
XceI	RCATGY	1 cut(s)	655
XmiI	GTMKAC	1 cut(s)	1060
XmnI	GAANNNNTTC	1 cut(s)	423
XspI	CTAG	2 cut(s)	405, 1056

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.