Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0002870

Physical Location & Seq

Genomic Coordinates Reverse (-)

1010810 .. 1012990

Gene Structure 2181 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00000580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGCCTAAGTCGGTATCGAGTAAGATACCGATAATGGAAAGCGATAGTAAACAGTTACCTCTTTTGGTTGTTGGAGATGTCCTTAATGTAGTAGGTTTGTGGGAGCACGGTTCCGTTTCTTTTGGTGCGGGACGCTCGGGATCCCGATATCGCCCCGAGGGGTATCGGAGCCCCCACGTTGGGAGCTTATCTCGCCGGCGTATAGGCGATATGAGTCTTGTGCTTCCGATACTTGTGCCTAGGAGGTATGTGTATACCAACAAGTCCCCTAAGTCCCCGGTCAAGAGTTCTCTTGGGTGGGGAGTTTGTCGCCGGGTTGAGCAAACCGCGGTGGGTCGATGTGCACGAGCGGAGGGTGTTGAAGTATTGGAAATCTCGCGTTTCCCACGGGGGCGATTTCTCCTTGGCTCTATGACCATTGATCAACCCGGTTTGAGTATGACGGAGGAGCGCATTGCCGATATGAGGACCACTTGGGCAATTTCGGACAACGTTTTGTTACGTCCCCGAGGGATGGCAAATAATGGCGGTACTTCGCTATGGAAGCTAAGCAAGTTTTTGTGTCCCGGTATCGGCGAGTTCAATTCTATGTTCAAGATGCGGTACTCGACCAAAGCCGGCGATAGCGGCCGTGTGAATTACAGGGCGCAGGCCAAACCGTTATCGAGGACTGCGGTAGAATATTTATGCGCCGTGGCGGGGAGGCCGTGCCTAGTAGGAGGCGATGGCGAGAATCCGGATATGGTGCACGGGCCCCGAGCTAGTTCTAACCCATCTATGAGTATCATGATTGCCTTTGTTGGTGGATTTTCTTGTCTTTGGTGTGTACTAATAGCATTTTTGTGCATCGTAGTGAGGCGGGGAGGTGGAGTTGACCATTCTAGAGAGGAAGCGTGTGGCGATGGTGATGGGTGTGTTTCCCAAGAGGACGAAGGGGTTCTATCGCTCGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

317

Amino Acids

34.36

Weight (kDa)

9.33

Isoelectric Point (pI)

46.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002870)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g07560
malus_domestica	MD07G1154000.v1.1
pyrus_communis	pycom14g14260 pycom16g16290
rosa_chinensis	RchiOBHm_Chr3g0469611 RchiOBHm_Chr5g0078081 RchiOBHm_Chr7g0208181
rosa_laevigata	RLG00000033831
rosa_multiflora	Rmu_co8062676.1_g000002 Rmu_sc0003108.1_g000027 Rmu_sc0006483.1_g000012 Rmu_sc0018944.1_g000001 Rmu_sc0022000.1_g000001 Rmu_sc0034052.1_g000001 Rmu_sc0041954.1_g000001
rosa_roxburghii	Rroxscaffold_1G00000580 Rroxscaffold_1G00006080 Rroxscaffold_1G00008040 Rroxscaffold_1G00008480 Rroxscaffold_1G00025750 Rroxscaffold_1G00025970 Rroxscaffold_1G00030650 Rroxscaffold_2G00092550 Rroxscaffold_3G00237550 Rroxscaffold_3G00245300 Rroxscaffold_4G00312850 Rroxscaffold_4G00312880 Rroxscaffold_4G00332520 Rroxscaffold_6G00411430
rosa_rugosa	Rorug06G0481400
rosa_samantha	Rh1CG136900 Rh2AG496900 Rh2CG482900 Rh3AG152300 Rh3CG167100 Rh5CG471900 Rh5CG472000 Rh7DG242000
rosa_wichuraiana	Rw7G010120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	350
AccI	GTMKAC	1 cut(s)	254
AccII	CGCG	2 cut(s)	329, 379
AccIII	TCCGGA	1 cut(s)	736
AclI	AACGTT	1 cut(s)	492
AclWI	GGATC	2 cut(s)	135, 148
AcoI	YGGCCR	1 cut(s)	628
AfaI	GTAC	3 cut(s)	532, 605, 828
AfiI	CCNNNNNNNGG	6 cut(s)	179, 180, 465, 514, 572, 699
AgsI	TTSAA	3 cut(s)	362, 583, 595
AluBI	AGCT	3 cut(s)	186, 547, 761
AluI	AGCT	3 cut(s)	186, 547, 761
Alw21I	GWGCWC	3 cut(s)	108, 346, 750
Alw44I	GTGCAC	2 cut(s)	342, 746
AlwI	GGATC	2 cut(s)	135, 148
Ama87I	CYCGRG	4 cut(s)	136, 155, 507, 756
Aor13HI	TCCGGA	1 cut(s)	736
AoxI	GGCC	4 cut(s)	628, 651, 704, 752
ApaI	GGGCCC	1 cut(s)	756
ApaLI	GTGCAC	2 cut(s)	342, 746
Asp700I	GAANNNNTTC	1 cut(s)	936
AspA2I	CCTAGG	1 cut(s)	239
AspLEI	GCGC	3 cut(s)	453, 649, 692
AspS9I	GGNCC	3 cut(s)	468, 752, 753
AsuC2I	CCSGG	4 cut(s)	278, 314, 429, 567
AsuHPI	GGTGA	1 cut(s)	917
AvaI	CYCGRG	4 cut(s)	136, 155, 507, 756
AvaII	GGWCC	1 cut(s)	468
AvrII	CCTAGG	1 cut(s)	239
BaeGI	GKGCMC	3 cut(s)	346, 750, 756
BamHI	GGATCC	1 cut(s)	140
BanII	GRGCYC	2 cut(s)	173, 756
BauI	CACGAG	2 cut(s)	345, 947
Bbv12I	GWGCWC	3 cut(s)	108, 346, 750
BccI	CCATC	5 cut(s)	508, 719, 781, 896, 902
BceAI	ACGGC	3 cut(s)	615, 677, 691
BcgI	CGANNNNNNTGC	2 cut(s)	217, 251
BclI	TGATCA	1 cut(s)	421
BcnI	CCSGG	4 cut(s)	278, 314, 429, 567
BfaI	CTAG	4 cut(s)	240, 713, 762, 882
BisI	GCNGC	1 cut(s)	628
BlnI	CCTAGG	1 cut(s)	239
BlpI	GCTNAGC	1 cut(s)	548
BlsI	GCNGC	1 cut(s)	629
Bme1390I	CCNGG	4 cut(s)	278, 314, 429, 567
Bme18I	GGWCC	1 cut(s)	468
BmeT110I	CYCGRG	4 cut(s)	136, 155, 507, 756
BmgT120I	GGNCC	3 cut(s)	468, 752, 753
BmiI	GGNNCC	5 cut(s)	112, 142, 170, 754, 755
BmrFI	CCNGG	4 cut(s)	278, 314, 429, 567
BmsI	GCATC	2 cut(s)	588, 855
BplI	GAGNNNNNCTC	2 cut(s)	175, 207
Bpu1102I	GCTNAGC	1 cut(s)	548
BpuMI	CCSGG	4 cut(s)	278, 314, 429, 567
BsaJI	CCNNGG	8 cut(s)	156, 239, 276, 327, 386, 403, 508, 693
BsaWI	WCCGGW	1 cut(s)	736
BsaXI	ACNNNNNCTCC	2 cut(s)	855, 885
Bsc4I	CCNNNNNNNGG	6 cut(s)	179, 180, 465, 514, 572, 699
Bse118I	RCCGGY	2 cut(s)	195, 617
Bse3DI	GCAATG	1 cut(s)	453
BseAI	TCCGGA	1 cut(s)	736
BseDI	CCNNGG	8 cut(s)	156, 239, 276, 327, 386, 403, 508, 693
BseGI	GGATG	1 cut(s)	519
BseLI	CCNNNNNNNGG	6 cut(s)	179, 180, 465, 514, 572, 699
BseMI	GCAATG	1 cut(s)	453
BseRI	GAGGAG	1 cut(s)	461
BseSI	GKGCMC	3 cut(s)	346, 750, 756
BseX3I	CGGCCG	1 cut(s)	628
Bsh1236I	CGCG	2 cut(s)	329, 379
Bsh1285I	CGRYCG	1 cut(s)	631
BshFI	GGCC	4 cut(s)	630, 653, 706, 754
BsiEI	CGRYCG	1 cut(s)	631
BsiHKAI	GWGCWC	3 cut(s)	108, 346, 750
BsiHKCI	CYCGRG	4 cut(s)	136, 155, 507, 756
BsiSI	CCGG	7 cut(s)	196, 278, 313, 429, 567, 618, 737
BslFI	GGGAC	5 cut(s)	144, 250, 259, 489, 549
BslI	CCNNNNNNNGG	6 cut(s)	179, 180, 465, 514, 572, 699
BsmFI	GGGAC	5 cut(s)	144, 250, 259, 489, 549
BsnI	GGCC	4 cut(s)	630, 653, 706, 754
BsoBI	CYCGRG	4 cut(s)	136, 155, 507, 756
Bsp120I	GGGCCC	1 cut(s)	752
Bsp1286I	GDGCHC	5 cut(s)	108, 173, 346, 750, 756
Bsp13I	TCCGGA	1 cut(s)	736
Bsp143I	GATC	2 cut(s)	140, 421
Bsp1720I	GCTNAGC	1 cut(s)	548
BspANI	GGCC	4 cut(s)	630, 653, 706, 754
BspEI	TCCGGA	1 cut(s)	736
BspFNI	CGCG	2 cut(s)	329, 379
BspHI	TCATGA	1 cut(s)	786
BspLI	GGNNCC	5 cut(s)	112, 142, 170, 754, 755
BspPI	GGATC	2 cut(s)	135, 148
BsrBI	CCGCTC	1 cut(s)	350
BsrDI	GCAATG	1 cut(s)	453
BsrFI	RCCGGY	2 cut(s)	195, 617
BssAI	RCCGGY	2 cut(s)	195, 617
BssECI	CCNNGG	8 cut(s)	156, 239, 276, 327, 386, 403, 508, 693
BssMI	GATC	2 cut(s)	140, 421
BssNAI	GTATAC	1 cut(s)	255
BssSI	CACGAG	2 cut(s)	345, 947
BssT1I	CCWWGG	2 cut(s)	239, 403
Bst1107I	GTATAC	1 cut(s)	255
Bst2BI	CACGAG	2 cut(s)	345, 947
Bst4CI	ACNGT	3 cut(s)	54, 110, 660
BstC8I	GCNNGC	3 cut(s)	197, 619, 651
BstDEI	CTNAG	3 cut(s)	6, 270, 548
BstDSI	CCRYGG	3 cut(s)	327, 386, 693
BstF5I	GGATG	1 cut(s)	519
BstFNI	CGCG	2 cut(s)	329, 379
BstHHI	GCGC	3 cut(s)	453, 649, 692
BstKTI	GATC	2 cut(s)	143, 424
BstMBI	GATC	2 cut(s)	140, 421
BstMCI	CGRYCG	1 cut(s)	631
BstMWI	GCNNNNNNNGC	3 cut(s)	192, 544, 627
BstSCI	CCNGG	4 cut(s)	276, 312, 427, 565
BstSLI	GKGCMC	3 cut(s)	346, 750, 756
BstUI	CGCG	2 cut(s)	329, 379
BstX2I	RGATCY	1 cut(s)	140
BstYI	RGATCY	1 cut(s)	140
BstZ17I	GTATAC	1 cut(s)	255
BstZI	CGGCCG	1 cut(s)	628
BsuRI	GGCC	4 cut(s)	630, 653, 706, 754
BtgI	CCRYGG	3 cut(s)	327, 386, 693
BtgZI	GCGATG	2 cut(s)	738, 915
BtsCI	GGATG	1 cut(s)	519
Cac8I	GCNNGC	3 cut(s)	197, 619, 651
CciI	TCATGA	1 cut(s)	786
CfoI	GCGC	3 cut(s)	453, 649, 692
Cfr10I	RCCGGY	2 cut(s)	195, 617
Cfr13I	GGNCC	3 cut(s)	468, 752, 753
Cfr42I	CCGCGG	1 cut(s)	330
CseI	GACGC	1 cut(s)	141
Csp6I	GTAC	3 cut(s)	531, 604, 827
CviAII	CATG	1 cut(s)	787
CviQI	GTAC	3 cut(s)	531, 604, 827
DdeI	CTNAG	3 cut(s)	6, 270, 548
DpnI	GATC	2 cut(s)	142, 423
DpnII	GATC	2 cut(s)	140, 421
EaeI	YGGCCR	1 cut(s)	628
EagI	CGGCCG	1 cut(s)	628
EclXI	CGGCCG	1 cut(s)	628
Eco130I	CCWWGG	2 cut(s)	239, 403
Eco24I	GRGCYC	2 cut(s)	173, 756
Eco32I	GATATC	1 cut(s)	149
Eco47I	GGWCC	1 cut(s)	468
Eco52I	CGGCCG	1 cut(s)	628
Eco88I	CYCGRG	4 cut(s)	136, 155, 507, 756
EcoO109I	RGGNCCY	1 cut(s)	753
EcoRV	GATATC	1 cut(s)	149
EcoT14I	CCWWGG	2 cut(s)	239, 403
EcoT38I	GRGCYC	2 cut(s)	173, 756
ErhI	CCWWGG	2 cut(s)	239, 403
FaeI	CATG	1 cut(s)	790
FaqI	GGGAC	5 cut(s)	144, 250, 259, 489, 549
FatI	CATG	1 cut(s)	786
FauI	CCCGC	3 cut(s)	121, 691, 852
FbaI	TGATCA	1 cut(s)	421
FblI	GTMKAC	1 cut(s)	254
Fnu4HI	GCNGC	1 cut(s)	628
FokI	GGATG	1 cut(s)	526
FriOI	GRGCYC	2 cut(s)	173, 756
Fsp4HI	GCNGC	1 cut(s)	628
FspBI	CTAG	4 cut(s)	240, 713, 762, 882
GlaI	GCGC	3 cut(s)	452, 648, 691
GluI	GCNGC	1 cut(s)	628
HaeIII	GGCC	4 cut(s)	630, 653, 706, 754
HapII	CCGG	7 cut(s)	196, 278, 313, 429, 567, 618, 737
HgaI	GACGC	1 cut(s)	141
HhaI	GCGC	3 cut(s)	453, 649, 692
Hin1II	CATG	1 cut(s)	790
Hin6I	GCGC	3 cut(s)	451, 647, 690
HinP1I	GCGC	3 cut(s)	451, 647, 690
HincII	GTYRAC	1 cut(s)	874
HindII	GTYRAC	1 cut(s)	874
HinfI	GANTC	2 cut(s)	214, 733
HpaII	CCGG	7 cut(s)	196, 278, 313, 429, 567, 618, 737
HphI	GGTGA	1 cut(s)	917
Hpy166II	GTNNAC	6 cut(s)	50, 255, 344, 748, 827, 874
Hpy188I	TCNGA	3 cut(s)	168, 228, 487
Hpy188III	TCNNGA	7 cut(s)	138, 144, 283, 595, 737, 787, 882
Hpy8I	GTNNAC	6 cut(s)	50, 255, 344, 748, 827, 874
HpyAV	CCTTC	1 cut(s)	926
HpyCH4III	ACNGT	3 cut(s)	54, 110, 660
HpyCH4IV	ACGT	3 cut(s)	177, 492, 502
HpyCH4V	TGCA	3 cut(s)	344, 748, 846
HpyF10VI	GCNNNNNNNGC	3 cut(s)	192, 544, 627
HpyF3I	CTNAG	3 cut(s)	6, 270, 548
HpySE526I	ACGT	3 cut(s)	177, 492, 502
Hsp92II	CATG	1 cut(s)	790
HspAI	GCGC	3 cut(s)	451, 647, 690
Kpn2I	TCCGGA	1 cut(s)	736
KroI	GCCGGC	2 cut(s)	195, 617
KroNI	GCCGGC	2 cut(s)	197, 619
Ksp22I	TGATCA	1 cut(s)	421
KspI	CCGCGG	1 cut(s)	330
Kzo9I	GATC	2 cut(s)	140, 421
LmnI	GCTCC	4 cut(s)	103, 168, 183, 448
LpnPI	CCDG	9 cut(s)	209, 291, 326, 442, 580, 628, 631, 635, 750
LweI	GCATC	2 cut(s)	588, 855
MaeI	CTAG	4 cut(s)	240, 713, 762, 882
MaeII	ACGT	3 cut(s)	177, 492, 502
MaeIII	GTNAC	2 cut(s)	54, 498
MalI	GATC	2 cut(s)	142, 423
MbiI	CCGCTC	1 cut(s)	350
MboI	GATC	2 cut(s)	140, 421
MflI	RGATCY	1 cut(s)	140
MhlI	GDGCHC	5 cut(s)	108, 173, 346, 750, 756
MluCI	AATT	3 cut(s)	480, 583, 637
MlyI	GAGTC	1 cut(s)	223
MmeI	TCCRAC	1 cut(s)	52
MreI	CGCCGGCG	1 cut(s)	195
MroI	TCCGGA	1 cut(s)	736
MroNI	GCCGGC	2 cut(s)	195, 617
MroXI	GAANNNNTTC	1 cut(s)	936
MseI	TTAA	1 cut(s)	84
MslI	CAYNNNNRTG	2 cut(s)	841, 851
MspA1I	CMGCKG	1 cut(s)	329
MspI	CCGG	7 cut(s)	196, 278, 313, 429, 567, 618, 737
MspR9I	CCNGG	4 cut(s)	278, 314, 429, 567
MvnI	CGCG	2 cut(s)	329, 379
MwoI	GCNNNNNNNGC	3 cut(s)	192, 544, 627
NaeI	GCCGGC	2 cut(s)	197, 619
NciI	CCSGG	4 cut(s)	278, 314, 429, 567
NdeII	GATC	2 cut(s)	140, 421
NgoMIV	GCCGGC	2 cut(s)	195, 617
NlaIII	CATG	1 cut(s)	790
NlaIV	GGNNCC	5 cut(s)	112, 142, 170, 754, 755
PagI	TCATGA	1 cut(s)	786
PcsI	WCGNNNNNNNCGW	1 cut(s)	343
PdiI	GCCGGC	2 cut(s)	197, 619
PdmI	GAANNNNTTC	1 cut(s)	936
PfeI	GAWTC	1 cut(s)	733
PkrI	GCNGC	1 cut(s)	629
PleI	GAGTC	1 cut(s)	222
PpsI	GAGTC	1 cut(s)	222
Psp1406I	AACGTT	1 cut(s)	492
PspN4I	GGNNCC	5 cut(s)	112, 142, 170, 754, 755
PspOMI	GGGCCC	1 cut(s)	752
PspPI	GGNCC	3 cut(s)	468, 752, 753
PsuI	RGATCY	1 cut(s)	140
RsaI	GTAC	3 cut(s)	532, 605, 828
RsaNI	GTAC	3 cut(s)	531, 604, 827
RseI	CAYNNNNRTG	2 cut(s)	841, 851
SacII	CCGCGG	1 cut(s)	330
SaqAI	TTAA	1 cut(s)	84
SatI	GCNGC	1 cut(s)	628
Sau3AI	GATC	2 cut(s)	140, 421
Sau96I	GGNCC	3 cut(s)	468, 752, 753
SchI	GAGTC	1 cut(s)	223
ScrFI	CCNGG	4 cut(s)	278, 314, 429, 567
SduI	GDGCHC	5 cut(s)	108, 173, 346, 750, 756
SfaNI	GCATC	2 cut(s)	588, 855
Sfr303I	CCGCGG	1 cut(s)	330
SgrAI	CRCCGGYG	1 cut(s)	195
SgrBI	CCGCGG	1 cut(s)	330
SinI	GGWCC	1 cut(s)	468
SmiMI	CAYNNNNRTG	2 cut(s)	841, 851
Sse9I	AATT	3 cut(s)	480, 583, 637
SspI	AATATT	1 cut(s)	683
SspMI	CTAG	4 cut(s)	240, 713, 762, 882
StyD4I	CCNGG	4 cut(s)	276, 312, 427, 565
StyI	CCWWGG	2 cut(s)	239, 403
TaaI	ACNGT	3 cut(s)	54, 110, 660
TaiI	ACGT	3 cut(s)	180, 495, 505
TaqI	TCGA	4 cut(s)	17, 337, 608, 665
TasI	AATT	3 cut(s)	480, 583, 637
TatI	WGTACW	1 cut(s)	826
TauI	GCSGC	1 cut(s)	630
TfiI	GAWTC	1 cut(s)	733
Tru1I	TTAA	1 cut(s)	84
Tru9I	TTAA	1 cut(s)	84
TspGWI	ACGGA	2 cut(s)	103, 458
VneI	GTGCAC	2 cut(s)	342, 746
VpaK11BI	GGWCC	1 cut(s)	468
XbaI	TCTAGA	1 cut(s)	881
XmaJI	CCTAGG	1 cut(s)	239
XmiI	GTMKAC	1 cut(s)	254
XmnI	GAANNNNTTC	1 cut(s)	936
XspI	CTAG	4 cut(s)	240, 713, 762, 882

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.