Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0002870

Physical Location & Seq

Genomic Coordinates Reverse (-)

9384036 .. 9385890

Gene Structure 1855 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G010120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGCCTCAGGATTTGCCGTCGGACCAGGAAACGGACGATGCCGAAGCTGAGTTCGTTGAAATTGATCCCTCTGGTCGTTACGGACGGTATAAAGAGGTTTTAGGCAAAGGGGCTTTCAAGAAAGTATATAGAGCGTTTGATGAATTGGAAGGAATTCAAGTAGCTTGGAACCAAGTTAAGGTGGCAGATCTATTGCGCAACTCTGAAGATTTGGAGCGCCTTTATTCGGAAGTTCATTTGCTCAAGACTTTGAAGCACAAGAACATTATTAAGTTTTACAACTCTTGGGTTGATACCAAGCATGAAAATATCAACTTCATTACAGAGATTTTCACTTCGGGAAACTTGAGGCATTTATTTGAAGAGGGAGGTGATTGGGAAAGGAAGAATCGCTTGAAGGTATATGGAGGCTTGTACTGCATGTCCACTCGAAATTTTAAGAAGGCAGCCGATTTGTTCCTGGATTCCATTTCTACCTTCACCACTTACGAAATATTTCCCTATGACATCTTCATATTTTATGCCGTCCTGACAAGCATTATATCTTTGGACAGAGTTTCTTTAAAACAGAAGGTGGTGGATGCTCCAGAGATACTAACGGTGATTGGGAAAATCCCGTACTTGTCTGAGTTTTTGAACTCTCTGTATGATTGTCAGTACAAGTCATTCTTCGCAGCATTTGCTGGTCTGACAGAGCAGATAAAGCTGGATCGTTATTTGCATCCACACTTCCGGTATTACATGAGGGAAATCAGAACCGTTGTTTATTCTCAATTTTTGGAGTCCTACAAGAGTGTCACTATTGAAGCAATGGCAAAGGCATTTGGCGTGACAGTGGATTTCATTGATCTGAGACGTAAATCTAATCCATTCTATGATCTGCATGGAGCTGTCTCGGTTCATTGCAGCAGGGAAACTCCACTGCAAGATAGACAAAGTTTCAGGTGTTCTAGAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016020 GO:0019538 GO:0019941 GO:0030163 GO:0032991 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0071704 GO:0071944 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko00010 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko03050 ko04066 ko05010 ko05169 map00010 map00710 map01100 map01110 map01120 map01130 map01200 map01230 map03050 map04066 map05010 map05169

Pfam Domains

Protein Families

PCI RPN7

Protein Analysis

319

Amino Acids

37.32

Weight (kDa)

6.47

Isoelectric Point (pI)

39.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	31 - 125	6.7e-12	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	31 - 122	3.2e-09	Protein tyrosine and serine/threonine kinase
RPN7	PF10602	115 - 191	2.6e-28	26S proteasome subunit RPN7
PCI	PF01399	232 - 283	8.2e-08	PCI domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Tree File

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Orthologous Genes (Group: OG0002870)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g07560
malus_domestica	MD07G1154000.v1.1
pyrus_communis	pycom14g14260 pycom16g16290
rosa_chinensis	RchiOBHm_Chr3g0469611 RchiOBHm_Chr5g0078081 RchiOBHm_Chr7g0208181
rosa_laevigata	RLG00000033831
rosa_multiflora	Rmu_co8062676.1_g000002 Rmu_sc0003108.1_g000027 Rmu_sc0006483.1_g000012 Rmu_sc0018944.1_g000001 Rmu_sc0022000.1_g000001 Rmu_sc0034052.1_g000001 Rmu_sc0041954.1_g000001
rosa_roxburghii	Rroxscaffold_1G00000580 Rroxscaffold_1G00006080 Rroxscaffold_1G00008040 Rroxscaffold_1G00008480 Rroxscaffold_1G00025750 Rroxscaffold_1G00025970 Rroxscaffold_1G00030650 Rroxscaffold_2G00092550 Rroxscaffold_3G00237550 Rroxscaffold_3G00245300 Rroxscaffold_4G00312850 Rroxscaffold_4G00312880 Rroxscaffold_4G00332520 Rroxscaffold_6G00411430
rosa_rugosa	Rorug06G0481400
rosa_samantha	Rh1CG136900 Rh2AG496900 Rh2CG482900 Rh3AG152300 Rh3CG167100 Rh5CG471900 Rh5CG472000 Rh7DG242000
rosa_wichuraiana	Rw7G010120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	197
AclWI	GGATC	2 cut(s)	59, 717
AcsI	RAATTY	2 cut(s)	153, 433
AcuI	CTGAAG	1 cut(s)	225
AfaI	GTAC	3 cut(s)	416, 620, 659
AfiI	CCNNNNNNNGG	3 cut(s)	31, 178, 226
AgsI	TTSAA	8 cut(s)	59, 118, 158, 253, 362, 397, 637, 806
AjnI	CCWGG	2 cut(s)	24, 459
AluBI	AGCT	4 cut(s)	47, 164, 706, 890
AluI	AGCT	4 cut(s)	47, 164, 706, 890
Alw26I	GTCTC	2 cut(s)	847, 898
AlwI	GGATC	2 cut(s)	59, 717
ApeKI	GCWGC	3 cut(s)	446, 674, 906
ApoI	RAATTY	2 cut(s)	153, 433
Asp700I	GAANNNNTTC	2 cut(s)	153, 495
AspLEI	GCGC	2 cut(s)	198, 219
AspS9I	GGNCC	1 cut(s)	22
AsuHPI	GGTGA	3 cut(s)	383, 472, 613
AvaII	GGWCC	1 cut(s)	22
AxyI	CCTNAGG	1 cut(s)	6
BbvI	GCAGC	3 cut(s)	458, 686, 918
BceAI	ACGGC	1 cut(s)	509
BciT130I	CCWGG	2 cut(s)	26, 461
BcoDI	GTCTC	2 cut(s)	847, 898
BfaI	CTAG	1 cut(s)	951
BfoI	RGCGCY	1 cut(s)	220
BglII	AGATCT	1 cut(s)	187
BisI	GCNGC	3 cut(s)	447, 675, 907
BlsI	GCNGC	3 cut(s)	448, 676, 908
Bme1390I	CCNGG	2 cut(s)	26, 461
Bme18I	GGWCC	1 cut(s)	22
BmgT120I	GGNCC	1 cut(s)	22
BmiI	GGNNCC	1 cut(s)	170
BmrFI	CCNGG	2 cut(s)	26, 461
BmsI	GCATC	3 cut(s)	28, 571, 730
BpmI	CTGGAG	1 cut(s)	570
BpuEI	CTTGAG	2 cut(s)	227, 367
BsaWI	WCCGGW	1 cut(s)	732
Bsc4I	CCNNNNNNNGG	3 cut(s)	31, 178, 226
Bse21I	CCTNAGG	1 cut(s)	6
Bse3DI	GCAATG	2 cut(s)	816, 901
BseBI	CCWGG	2 cut(s)	26, 461
BseGI	GGATG	2 cut(s)	586, 721
BseLI	CCNNNNNNNGG	3 cut(s)	31, 178, 226
BseMI	GCAATG	2 cut(s)	816, 901
BseMII	CTCAG	4 cut(s)	20, 39, 618, 842
BseXI	GCAGC	3 cut(s)	458, 686, 918
BsiSI	CCGG	1 cut(s)	733
BslI	CCNNNNNNNGG	3 cut(s)	31, 178, 226
BsmAI	GTCTC	2 cut(s)	847, 898
BsmBI	CGTCTC	1 cut(s)	847
Bsp143I	GATC	5 cut(s)	64, 187, 709, 847, 877
BspCNI	CTCAG	4 cut(s)	19, 40, 619, 843
BspLI	GGNNCC	1 cut(s)	170
BspPI	GGATC	2 cut(s)	59, 717
BsrDI	GCAATG	2 cut(s)	816, 901
BssMI	GATC	5 cut(s)	64, 187, 709, 847, 877
Bst2UI	CCWGG	2 cut(s)	26, 461
Bst4CI	ACNGT	4 cut(s)	87, 601, 760, 835
Bst6I	CTCTTC	1 cut(s)	357
BstAPI	GCANNNNNTGC	1 cut(s)	680
BstDEI	CTNAG	4 cut(s)	6, 48, 627, 851
BstF5I	GGATG	2 cut(s)	586, 721
BstH2I	RGCGCY	1 cut(s)	220
BstHHI	GCGC	2 cut(s)	198, 219
BstKTI	GATC	5 cut(s)	67, 190, 712, 850, 880
BstMAI	GTCTC	2 cut(s)	847, 898
BstMBI	GATC	5 cut(s)	64, 187, 709, 847, 877
BstMWI	GCNNNNNNNGC	3 cut(s)	417, 680, 703
BstNI	CCWGG	2 cut(s)	26, 461
BstNSI	RCATGY	1 cut(s)	424
BstSCI	CCNGG	2 cut(s)	24, 459
BstV1I	GCAGC	3 cut(s)	458, 686, 918
BstX2I	RGATCY	1 cut(s)	187
BstYI	RGATCY	1 cut(s)	187
Bsu36I	CCTNAGG	1 cut(s)	6
BtsCI	GGATG	2 cut(s)	586, 721
BtsI	GCAGTG	1 cut(s)	920
BtsIMutI	CAGTG	2 cut(s)	840, 920
CfoI	GCGC	2 cut(s)	198, 219
Cfr13I	GGNCC	1 cut(s)	22
Csp6I	GTAC	3 cut(s)	415, 619, 658
CviAII	CATG	4 cut(s)	302, 421, 742, 884
CviJI	RGCY	7 cut(s)	47, 113, 164, 411, 449, 706, 890
CviKI_1	RGCY	7 cut(s)	47, 113, 164, 411, 449, 706, 890
CviQI	GTAC	3 cut(s)	415, 619, 658
DdeI	CTNAG	4 cut(s)	6, 48, 627, 851
DpnI	GATC	5 cut(s)	66, 189, 711, 849, 879
DpnII	GATC	5 cut(s)	64, 187, 709, 847, 877
DraI	TTTAAA	1 cut(s)	564
Eam1104I	CTCTTC	1 cut(s)	357
EarI	CTCTTC	1 cut(s)	357
Eco47I	GGWCC	1 cut(s)	22
Eco57I	CTGAAG	1 cut(s)	225
Eco81I	CCTNAGG	1 cut(s)	6
EcoRI	GAATTC	1 cut(s)	153
EcoRII	CCWGG	2 cut(s)	24, 459
Esp3I	CGTCTC	1 cut(s)	847
FaeI	CATG	4 cut(s)	305, 424, 745, 887
FalI	AAGNNNNNCTT	4 cut(s)	377, 409, 653, 685
FatI	CATG	4 cut(s)	301, 420, 741, 883
Fnu4HI	GCNGC	3 cut(s)	447, 675, 907
FokI	GGATG	2 cut(s)	593, 708
Fsp4HI	GCNGC	3 cut(s)	447, 675, 907
FspBI	CTAG	1 cut(s)	951
FspI	TGCGCA	1 cut(s)	197
GlaI	GCGC	2 cut(s)	197, 218
GluI	GCNGC	3 cut(s)	447, 675, 907
GsuI	CTGGAG	1 cut(s)	570
HaeII	RGCGCY	1 cut(s)	220
HapII	CCGG	1 cut(s)	733
HhaI	GCGC	2 cut(s)	198, 219
Hin1II	CATG	4 cut(s)	305, 424, 745, 887
Hin6I	GCGC	2 cut(s)	196, 217
HinP1I	GCGC	2 cut(s)	196, 217
HinfI	GANTC	3 cut(s)	388, 464, 782
HpaII	CCGG	1 cut(s)	733
HphI	GGTGA	3 cut(s)	383, 472, 613
Hpy166II	GTNNAC	1 cut(s)	426
Hpy188I	TCNGA	7 cut(s)	22, 205, 229, 628, 690, 755, 852
Hpy188III	TCNNGA	7 cut(s)	8, 118, 244, 339, 529, 587, 951
Hpy8I	GTNNAC	1 cut(s)	426
Hpy99I	CGWCG	1 cut(s)	22
HpyAV	CCTTC	5 cut(s)	143, 391, 436, 487, 565
HpyCH4III	ACNGT	4 cut(s)	87, 601, 760, 835
HpyCH4IV	ACGT	1 cut(s)	856
HpyCH4V	TGCA	5 cut(s)	420, 721, 883, 906, 925
HpyF10VI	GCNNNNNNNGC	3 cut(s)	417, 680, 703
HpyF3I	CTNAG	4 cut(s)	6, 48, 627, 851
HpySE526I	ACGT	1 cut(s)	856
Hsp92II	CATG	4 cut(s)	305, 424, 745, 887
HspAI	GCGC	2 cut(s)	196, 217
Kzo9I	GATC	5 cut(s)	64, 187, 709, 847, 877
LmnI	GCTCC	3 cut(s)	214, 589, 887
Lsp1109I	GCAGC	3 cut(s)	458, 686, 918
LweI	GCATC	3 cut(s)	28, 571, 730
MaeI	CTAG	1 cut(s)	951
MaeII	ACGT	1 cut(s)	856
MaeIII	GTNAC	3 cut(s)	77, 796, 829
MalI	GATC	5 cut(s)	66, 189, 711, 849, 879
MboI	GATC	5 cut(s)	64, 187, 709, 847, 877
MboII	GAAGA	5 cut(s)	218, 374, 397, 502, 661
MflI	RGATCY	1 cut(s)	187
MluCI	AATT	5 cut(s)	60, 143, 153, 433, 773
MlyI	GAGTC	1 cut(s)	791
MnlI	CCTC	8 cut(s)	15, 79, 88, 342, 358, 362, 401, 738
MroXI	GAANNNNTTC	2 cut(s)	153, 495
MseI	TTAA	4 cut(s)	177, 270, 438, 563
MspI	CCGG	1 cut(s)	733
MspR9I	CCNGG	2 cut(s)	26, 461
MvaI	CCWGG	2 cut(s)	26, 461
MwoI	GCNNNNNNNGC	3 cut(s)	417, 680, 703
NdeII	GATC	5 cut(s)	64, 187, 709, 847, 877
NlaIII	CATG	4 cut(s)	305, 424, 745, 887
NlaIV	GGNNCC	1 cut(s)	170
NmuCI	GTSAC	2 cut(s)	796, 829
NsbI	TGCGCA	1 cut(s)	197
NspI	RCATGY	1 cut(s)	424
PdmI	GAANNNNTTC	2 cut(s)	153, 495
PfeI	GAWTC	2 cut(s)	388, 464
PfoI	TCCNGGA	1 cut(s)	459
PkrI	GCNGC	3 cut(s)	448, 676, 908
PleI	GAGTC	1 cut(s)	790
PpsI	GAGTC	1 cut(s)	790
Psp6I	CCWGG	2 cut(s)	24, 459
PspGI	CCWGG	2 cut(s)	24, 459
PspN4I	GGNNCC	1 cut(s)	170
PspPI	GGNCC	1 cut(s)	22
PsuI	RGATCY	1 cut(s)	187
RsaI	GTAC	3 cut(s)	416, 620, 659
RsaNI	GTAC	3 cut(s)	415, 619, 658
SaqAI	TTAA	4 cut(s)	177, 270, 438, 563
SatI	GCNGC	3 cut(s)	447, 675, 907
Sau3AI	GATC	5 cut(s)	64, 187, 709, 847, 877
Sau96I	GGNCC	1 cut(s)	22
SchI	GAGTC	1 cut(s)	791
ScrFI	CCNGG	2 cut(s)	26, 461
SfaNI	GCATC	3 cut(s)	28, 571, 730
SinI	GGWCC	1 cut(s)	22
SmlI	CTYRAG	2 cut(s)	242, 346
SmoI	CTYRAG	2 cut(s)	242, 346
Sse9I	AATT	5 cut(s)	60, 143, 153, 433, 773
SspI	AATATT	1 cut(s)	495
SspMI	CTAG	1 cut(s)	951
StyD4I	CCNGG	2 cut(s)	24, 459
TaaI	ACNGT	4 cut(s)	87, 601, 760, 835
TaiI	ACGT	1 cut(s)	859
TaqI	TCGA	1 cut(s)	430
TasI	AATT	5 cut(s)	60, 143, 153, 433, 773
TatI	WGTACW	2 cut(s)	414, 657
TfiI	GAWTC	2 cut(s)	388, 464
Tru1I	TTAA	4 cut(s)	177, 270, 438, 563
Tru9I	TTAA	4 cut(s)	177, 270, 438, 563
TscAI	CASTG	2 cut(s)	840, 927
TseFI	GTSAC	2 cut(s)	796, 829
TseI	GCWGC	3 cut(s)	446, 674, 906
Tsp45I	GTSAC	2 cut(s)	796, 829
TspDTI	ATGAA	7 cut(s)	156, 224, 307, 318, 502, 832, 890
TspGWI	ACGGA	2 cut(s)	47, 96
TspRI	CASTG	2 cut(s)	840, 927
VpaK11BI	GGWCC	1 cut(s)	22
XapI	RAATTY	2 cut(s)	153, 433
XbaI	TCTAGA	1 cut(s)	950
XceI	RCATGY	1 cut(s)	424
XmnI	GAANNNNTTC	2 cut(s)	153, 495
XspI	CTAG	1 cut(s)	951

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.