Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0002870

Physical Location & Seq

Genomic Coordinates Forward (+)

40852938 .. 40857409

Gene Structure 4472 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00030650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGCCCAGATTTCGGATTAGCGGGATTGCGTCCGGGCTCAAGGATTTTGGAGATCGGCGCTTCGTTTTTGTCCGTAGGTTATTACCTAACCTACCTTATAAATTGGGGTCTACCGTGCATAAGAGTCGAGGTATAGTGTCAACCACCTTCATTCTTGTTGTGGGCCCTGCAGGCCACTTCGGATTTCAAGGTGAAATCCCAAGGCGGTTTTGTTATCTAGGATTTGAAATCCAATATATGATCTCAACACCCATGACATCTTCTTTGAGAAACTATTTGTTTATGTATGGTCCCGAGGGCCACCGAGAATCACCGAAATGGCATACCATGTTTCAACTGTCTCGGGAAGGGTCCGATCTAGCTAAATCATGGGATGCCTCAATCTGCTACTTTCTCTATCGGTCTCGCCTATCCGTAAGACAAACCAAGGTCGGAGGAAGACCGGGTGTGCTGCCTTCAACGCTCCAATGCCGAAGTCGGTATCGTTATAAGATGGTAATGAAAAGCGATAGTAAACGGTTACCTCTTTCGGTCGTTGGAGATGACCTTGAATATAGTAGGTTCATGGGAGCTTGGTTTCATTCCTTTCGGTGTGGGACATTTGGGGTTCCGATATCGCCCCGAGGGGTATCGGGACCCTCGACCGGGAGCTCTTTCCTTACTTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

222

Amino Acids

25.21

Weight (kDa)

10.4

Isoelectric Point (pI)

48.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002870)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g07560
malus_domestica	MD07G1154000.v1.1
pyrus_communis	pycom14g14260 pycom16g16290
rosa_chinensis	RchiOBHm_Chr3g0469611 RchiOBHm_Chr5g0078081 RchiOBHm_Chr7g0208181
rosa_laevigata	RLG00000033831
rosa_multiflora	Rmu_co8062676.1_g000002 Rmu_sc0003108.1_g000027 Rmu_sc0006483.1_g000012 Rmu_sc0018944.1_g000001 Rmu_sc0022000.1_g000001 Rmu_sc0034052.1_g000001 Rmu_sc0041954.1_g000001
rosa_roxburghii	Rroxscaffold_1G00000580 Rroxscaffold_1G00006080 Rroxscaffold_1G00008040 Rroxscaffold_1G00008480 Rroxscaffold_1G00025750 Rroxscaffold_1G00025970 Rroxscaffold_1G00030650 Rroxscaffold_2G00092550 Rroxscaffold_3G00237550 Rroxscaffold_3G00245300 Rroxscaffold_4G00312850 Rroxscaffold_4G00312880 Rroxscaffold_4G00332520 Rroxscaffold_6G00411430
rosa_rugosa	Rorug06G0481400
rosa_samantha	Rh1CG136900 Rh2AG496900 Rh2CG482900 Rh3AG152300 Rh3CG167100 Rh5CG471900 Rh5CG472000 Rh7DG242000
rosa_wichuraiana	Rw7G010120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	99, 489, 667
AccI	GTMKAC	1 cut(s)	110
AciI	CCGC	2 cut(s)	21, 205
AfiI	CCNNNNNNNGG	3 cut(s)	12, 644, 645
AgsI	TTSAA	5 cut(s)	188, 227, 335, 459, 551
AluBI	AGCT	3 cut(s)	362, 572, 651
AluI	AGCT	3 cut(s)	362, 572, 651
Alw21I	GWGCWC	1 cut(s)	653
Alw26I	GTCTC	2 cut(s)	345, 408
Ama87I	CYCGRG	3 cut(s)	293, 342, 621
AoxI	GGCC	3 cut(s)	163, 172, 298
ApaI	GGGCCC	1 cut(s)	167
ApeKI	GCWGC	1 cut(s)	451
ArsI	GACNNNNNNTTYG	2 cut(s)	247, 279
AspLEI	GCGC	1 cut(s)	60
AspS9I	GGNCC	6 cut(s)	163, 164, 290, 298, 351, 635
AsuC2I	CCSGG	3 cut(s)	34, 444, 646
AsuHPI	GGTGA	2 cut(s)	203, 303
AvaI	CYCGRG	3 cut(s)	293, 342, 621
AvaII	GGWCC	3 cut(s)	290, 351, 635
BaeGI	GKGCMC	1 cut(s)	167
BanII	GRGCYC	3 cut(s)	39, 167, 653
BbsI	GAAGAC	1 cut(s)	445
Bbv12I	GWGCWC	1 cut(s)	653
BbvI	GCAGC	1 cut(s)	438
BccI	CCATC	1 cut(s)	487
BcgI	CGANNNNNNTGC	2 cut(s)	107, 141
BcnI	CCSGG	3 cut(s)	34, 444, 646
BcoDI	GTCTC	2 cut(s)	345, 408
BfaI	CTAG	2 cut(s)	218, 359
BfmI	CTRYAG	1 cut(s)	168
BfoI	RGCGCY	1 cut(s)	61
BglI	GCCNNNNNGGC	1 cut(s)	171
BisI	GCNGC	1 cut(s)	452
BlsI	GCNGC	1 cut(s)	453
Bme1390I	CCNGG	3 cut(s)	34, 444, 646
Bme18I	GGWCC	3 cut(s)	290, 351, 635
BmeT110I	CYCGRG	3 cut(s)	293, 342, 621
BmgT120I	GGNCC	6 cut(s)	163, 164, 290, 298, 351, 635
BmiI	GGNNCC	6 cut(s)	165, 292, 352, 609, 636, 637
BmrFI	CCNGG	3 cut(s)	34, 444, 646
BmsI	GCATC	1 cut(s)	364
BpiI	GAAGAC	1 cut(s)	445
BpuEI	CTTGAG	1 cut(s)	23
BpuMI	CCSGG	3 cut(s)	34, 444, 646
BsaI	GGTCTC	1 cut(s)	408
BsaJI	CCNNGG	4 cut(s)	200, 294, 426, 622
Bsc4I	CCNNNNNNNGG	3 cut(s)	12, 644, 645
BseDI	CCNNGG	4 cut(s)	200, 294, 426, 622
BseGI	GGATG	1 cut(s)	379
BseLI	CCNNNNNNNGG	3 cut(s)	12, 644, 645
BseSI	GKGCMC	1 cut(s)	167
BseXI	GCAGC	1 cut(s)	438
Bsh1285I	CGRYCG	2 cut(s)	534, 645
BshFI	GGCC	3 cut(s)	165, 174, 300
BsiEI	CGRYCG	2 cut(s)	534, 645
BsiHKAI	GWGCWC	1 cut(s)	653
BsiHKCI	CYCGRG	3 cut(s)	293, 342, 621
BsiSI	CCGG	3 cut(s)	33, 443, 645
BslFI	GGGAC	3 cut(s)	276, 610, 648
BslI	CCNNNNNNNGG	3 cut(s)	12, 644, 645
BsmAI	GTCTC	2 cut(s)	345, 408
BsmFI	GGGAC	3 cut(s)	276, 610, 648
BsnI	GGCC	3 cut(s)	165, 174, 300
Bso31I	GGTCTC	1 cut(s)	408
BsoBI	CYCGRG	3 cut(s)	293, 342, 621
Bsp120I	GGGCCC	1 cut(s)	163
Bsp1286I	GDGCHC	3 cut(s)	39, 167, 653
Bsp143I	GATC	3 cut(s)	52, 240, 355
BspACI	CCGC	2 cut(s)	21, 205
BspANI	GGCC	3 cut(s)	165, 174, 300
BspLI	GGNNCC	6 cut(s)	165, 292, 352, 609, 636, 637
BspMAI	CTGCAG	1 cut(s)	172
BspTNI	GGTCTC	1 cut(s)	408
BssECI	CCNNGG	4 cut(s)	200, 294, 426, 622
BssMI	GATC	3 cut(s)	52, 240, 355
BssT1I	CCWWGG	2 cut(s)	200, 426
Bst4CI	ACNGT	3 cut(s)	115, 339, 519
BstC8I	GCNNGC	1 cut(s)	172
BstEII	GGTNACC	1 cut(s)	519
BstF5I	GGATG	1 cut(s)	379
BstH2I	RGCGCY	1 cut(s)	61
BstHHI	GCGC	1 cut(s)	60
BstKTI	GATC	3 cut(s)	55, 243, 358
BstMAI	GTCTC	2 cut(s)	345, 408
BstMBI	GATC	3 cut(s)	52, 240, 355
BstMCI	CGRYCG	2 cut(s)	534, 645
BstMWI	GCNNNNNNNGC	2 cut(s)	171, 460
BstPI	GGTNACC	1 cut(s)	519
BstSCI	CCNGG	3 cut(s)	32, 442, 644
BstSFI	CTRYAG	1 cut(s)	168
BstSLI	GKGCMC	1 cut(s)	167
BstV1I	GCAGC	1 cut(s)	438
BstV2I	GAAGAC	1 cut(s)	445
BsuRI	GGCC	3 cut(s)	165, 174, 300
BtsCI	GGATG	1 cut(s)	379
Cac8I	GCNNGC	1 cut(s)	172
CfoI	GCGC	1 cut(s)	60
Cfr13I	GGNCC	6 cut(s)	163, 164, 290, 298, 351, 635
CseI	GACGC	1 cut(s)	18
CviAII	CATG	4 cut(s)	253, 328, 369, 565
CviJI	RGCY	7 cut(s)	37, 165, 174, 300, 362, 572, 651
CviKI_1	RGCY	7 cut(s)	37, 165, 174, 300, 362, 572, 651
DpnI	GATC	3 cut(s)	54, 242, 357
DpnII	GATC	3 cut(s)	52, 240, 355
Ecl136II	GAGCTC	1 cut(s)	651
Eco130I	CCWWGG	2 cut(s)	200, 426
Eco24I	GRGCYC	3 cut(s)	39, 167, 653
Eco31I	GGTCTC	1 cut(s)	408
Eco32I	GATATC	1 cut(s)	615
Eco47I	GGWCC	3 cut(s)	290, 351, 635
Eco53kI	GAGCTC	1 cut(s)	651
Eco88I	CYCGRG	3 cut(s)	293, 342, 621
Eco91I	GGTNACC	1 cut(s)	519
EcoICRI	GAGCTC	1 cut(s)	651
EcoO109I	RGGNCCY	2 cut(s)	164, 635
EcoO65I	GGTNACC	1 cut(s)	519
EcoRV	GATATC	1 cut(s)	615
EcoT14I	CCWWGG	2 cut(s)	200, 426
EcoT38I	GRGCYC	3 cut(s)	39, 167, 653
ErhI	CCWWGG	2 cut(s)	200, 426
FaeI	CATG	4 cut(s)	256, 331, 372, 568
FaqI	GGGAC	3 cut(s)	276, 610, 648
FatI	CATG	4 cut(s)	252, 327, 368, 564
FauI	CCCGC	1 cut(s)	14
FblI	GTMKAC	1 cut(s)	110
Fnu4HI	GCNGC	1 cut(s)	452
FokI	GGATG	1 cut(s)	386
FriOI	GRGCYC	3 cut(s)	39, 167, 653
Fsp4HI	GCNGC	1 cut(s)	452
FspBI	CTAG	2 cut(s)	218, 359
GlaI	GCGC	1 cut(s)	59
GluI	GCNGC	1 cut(s)	452
HaeII	RGCGCY	1 cut(s)	61
HaeIII	GGCC	3 cut(s)	165, 174, 300
HapII	CCGG	3 cut(s)	33, 443, 645
HgaI	GACGC	1 cut(s)	18
HhaI	GCGC	1 cut(s)	60
Hin1II	CATG	4 cut(s)	256, 331, 372, 568
Hin6I	GCGC	1 cut(s)	58
HinP1I	GCGC	1 cut(s)	58
HincII	GTYRAC	1 cut(s)	141
HindII	GTYRAC	1 cut(s)	141
HinfI	GANTC	2 cut(s)	124, 308
HpaII	CCGG	3 cut(s)	33, 443, 645
HphI	GGTGA	2 cut(s)	203, 303
Hpy166II	GTNNAC	3 cut(s)	111, 141, 515
Hpy188I	TCNGA	5 cut(s)	15, 182, 355, 434, 612
Hpy188III	TCNNGA	3 cut(s)	293, 344, 633
Hpy8I	GTNNAC	3 cut(s)	111, 141, 515
HpyAV	CCTTC	3 cut(s)	157, 341, 465
HpyCH4III	ACNGT	3 cut(s)	115, 339, 519
HpyCH4V	TGCA	2 cut(s)	118, 170
HpyF10VI	GCNNNNNNNGC	2 cut(s)	171, 460
Hsp92II	CATG	4 cut(s)	256, 331, 372, 568
HspAI	GCGC	1 cut(s)	58
KflI	GGGWCCC	1 cut(s)	635
Kzo9I	GATC	3 cut(s)	52, 240, 355
LmnI	GCTCC	3 cut(s)	468, 569, 648
LpnPI	CCDG	6 cut(s)	19, 46, 156, 180, 456, 658
Lsp1109I	GCAGC	1 cut(s)	438
LweI	GCATC	1 cut(s)	364
MaeI	CTAG	2 cut(s)	218, 359
MaeIII	GTNAC	1 cut(s)	519
MalI	GATC	3 cut(s)	54, 242, 357
MboI	GATC	3 cut(s)	52, 240, 355
MboII	GAAGA	2 cut(s)	252, 450
MhlI	GDGCHC	3 cut(s)	39, 167, 653
MluCI	AATT	1 cut(s)	101
MlyI	GAGTC	1 cut(s)	133
MmeI	TCCRAC	2 cut(s)	412, 517
MnlI	CCTC	7 cut(s)	122, 289, 388, 428, 534, 617, 649
MslI	CAYNNNNRTG	1 cut(s)	316
MspI	CCGG	3 cut(s)	33, 443, 645
MspR9I	CCNGG	3 cut(s)	34, 444, 646
MwoI	GCNNNNNNNGC	2 cut(s)	171, 460
NciI	CCSGG	3 cut(s)	34, 444, 646
NdeII	GATC	3 cut(s)	52, 240, 355
NlaIII	CATG	4 cut(s)	256, 331, 372, 568
NlaIV	GGNNCC	6 cut(s)	165, 292, 352, 609, 636, 637
PcsI	WCGNNNNNNNCGW	1 cut(s)	638
PfeI	GAWTC	1 cut(s)	308
PkrI	GCNGC	1 cut(s)	453
PleI	GAGTC	1 cut(s)	132
PpsI	GAGTC	1 cut(s)	132
PpuMI	RGGWCCY	1 cut(s)	635
PsiI	TTATAA	3 cut(s)	99, 489, 667
Psp124BI	GAGCTC	1 cut(s)	653
Psp5II	RGGWCCY	1 cut(s)	635
PspEI	GGTNACC	1 cut(s)	519
PspN4I	GGNNCC	6 cut(s)	165, 292, 352, 609, 636, 637
PspOMI	GGGCCC	1 cut(s)	163
PspPI	GGNCC	6 cut(s)	163, 164, 290, 298, 351, 635
PspPPI	RGGWCCY	1 cut(s)	635
PstI	CTGCAG	1 cut(s)	172
RseI	CAYNNNNRTG	1 cut(s)	316
SacI	GAGCTC	1 cut(s)	653
SatI	GCNGC	1 cut(s)	452
Sau3AI	GATC	3 cut(s)	52, 240, 355
Sau96I	GGNCC	6 cut(s)	163, 164, 290, 298, 351, 635
SbfI	CCTGCAGG	1 cut(s)	172
SchI	GAGTC	1 cut(s)	133
ScrFI	CCNGG	3 cut(s)	34, 444, 646
SdaI	CCTGCAGG	1 cut(s)	172
SduI	GDGCHC	3 cut(s)	39, 167, 653
SfaNI	GCATC	1 cut(s)	364
SfcI	CTRYAG	1 cut(s)	168
SfiI	GGCCNNNNNGGCC	1 cut(s)	171
SinI	GGWCC	3 cut(s)	290, 351, 635
SmiMI	CAYNNNNRTG	1 cut(s)	316
SmlI	CTYRAG	1 cut(s)	38
SmoI	CTYRAG	1 cut(s)	38
Sse8387I	CCTGCAGG	1 cut(s)	172
Sse9I	AATT	1 cut(s)	101
SsiI	CCGC	2 cut(s)	21, 205
SspMI	CTAG	2 cut(s)	218, 359
SstI	GAGCTC	1 cut(s)	653
StyD4I	CCNGG	3 cut(s)	32, 442, 644
StyI	CCWWGG	2 cut(s)	200, 426
TaaI	ACNGT	3 cut(s)	115, 339, 519
TaqI	TCGA	2 cut(s)	127, 641
TaqII	GACCGA	2 cut(s)	390, 520
TasI	AATT	1 cut(s)	101
TfiI	GAWTC	1 cut(s)	308
TseI	GCWGC	1 cut(s)	451
TspDTI	ATGAA	4 cut(s)	139, 515, 553, 569
TspGWI	ACGGA	2 cut(s)	62, 403
VpaK11BI	GGWCC	3 cut(s)	290, 351, 635
XmiI	GTMKAC	1 cut(s)	110
XspI	CTAG	2 cut(s)	218, 359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.