Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0002870

Physical Location & Seq

Genomic Coordinates Forward (+)

10209918 .. 10210496

Gene Structure 579 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00008040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGGAAAGCTACCGTAAATATTTACCTCTTTGGGTTGTCGAGGATGCCCTTGTTATAGCATATTGGTGGGAGTCTAGCTCCGTTTCTTTTGGTGTGGGGCTCTCGGGATCTCGATATCGCCCCGTTAGGTATATGGATGGCCGACCGGGAGCTTTCCTTGCTTATGTGTTGGCGATACGAGCCTTGTGCTTCCGGTTCTTGTGCCTAGGAGCCCACTACTTCCAAAGCTTCCACACCACCAACAGTGGAATCAAAGTCAAAAATTCTAACGGTATTGATTGTGAGGATTTTGATTATACTACATCTGCATTGAGTTTCTTCATGATTCCTTCCATGGCTACATCTGAGAGCTTCTTCTCCATTTTTTCTCTTCTGGGCTTGGTGAAGTCTTCTTCTTTAATGGTTTCAGAGCTTTGGGGACATCATCTAAGAGCTGTGATGAATAAATATTTAGTGTTGGATCTGGAACCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

157

Amino Acids

17.83

Weight (kDa)

6.89

Isoelectric Point (pI)

35.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002870)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g07560
malus_domestica	MD07G1154000.v1.1
pyrus_communis	pycom14g14260 pycom16g16290
rosa_chinensis	RchiOBHm_Chr3g0469611 RchiOBHm_Chr5g0078081 RchiOBHm_Chr7g0208181
rosa_laevigata	RLG00000033831
rosa_multiflora	Rmu_co8062676.1_g000002 Rmu_sc0003108.1_g000027 Rmu_sc0006483.1_g000012 Rmu_sc0018944.1_g000001 Rmu_sc0022000.1_g000001 Rmu_sc0034052.1_g000001 Rmu_sc0041954.1_g000001
rosa_roxburghii	Rroxscaffold_1G00000580 Rroxscaffold_1G00006080 Rroxscaffold_1G00008040 Rroxscaffold_1G00008480 Rroxscaffold_1G00025750 Rroxscaffold_1G00025970 Rroxscaffold_1G00030650 Rroxscaffold_2G00092550 Rroxscaffold_3G00237550 Rroxscaffold_3G00245300 Rroxscaffold_4G00312850 Rroxscaffold_4G00312880 Rroxscaffold_4G00332520 Rroxscaffold_6G00411430
rosa_rugosa	Rorug06G0481400
rosa_samantha	Rh1CG136900 Rh2AG496900 Rh2CG482900 Rh3AG152300 Rh3CG167100 Rh5CG471900 Rh5CG472000 Rh7DG242000
rosa_wichuraiana	Rw7G010120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	115, 468
AcoI	YGGCCR	1 cut(s)	139
AcsI	RAATTY	1 cut(s)	262
AluBI	AGCT	7 cut(s)	9, 78, 152, 228, 351, 412, 434
AluI	AGCT	7 cut(s)	9, 78, 152, 228, 351, 412, 434
AlwI	GGATC	2 cut(s)	115, 468
Ama87I	CYCGRG	1 cut(s)	103
AoxI	GGCC	1 cut(s)	139
ApoI	RAATTY	1 cut(s)	262
AspA2I	CCTAGG	1 cut(s)	205
AsuC2I	CCSGG	1 cut(s)	147
AsuHPI	GGTGA	1 cut(s)	394
AvaI	CYCGRG	1 cut(s)	103
AvrII	CCTAGG	1 cut(s)	205
BanII	GRGCYC	2 cut(s)	102, 214
BbsI	GAAGAC	1 cut(s)	381
BccI	CCATC	1 cut(s)	131
BcgI	CGANNNNNNTGC	2 cut(s)	168, 202
BcnI	CCSGG	1 cut(s)	147
BfaI	CTAG	2 cut(s)	75, 206
BlnI	CCTAGG	1 cut(s)	205
Bme1390I	CCNGG	1 cut(s)	147
BmeT110I	CYCGRG	1 cut(s)	103
BmiI	GGNNCC	2 cut(s)	211, 468
BmrFI	CCNGG	1 cut(s)	147
BmsI	GCATC	1 cut(s)	34
BpiI	GAAGAC	1 cut(s)	381
BplI	GAGNNNNNCTC	2 cut(s)	62, 94
BpuMI	CCSGG	1 cut(s)	147
BsaJI	CCNNGG	2 cut(s)	205, 333
BsaWI	WCCGGW	1 cut(s)	192
BseDI	CCNNGG	2 cut(s)	205, 333
BseGI	GGATG	2 cut(s)	49, 142
BseMII	CTCAG	1 cut(s)	336
Bsh1285I	CGRYCG	1 cut(s)	146
BshFI	GGCC	1 cut(s)	141
BsiEI	CGRYCG	1 cut(s)	146
BsiHKCI	CYCGRG	1 cut(s)	103
BsiSI	CCGG	2 cut(s)	146, 193
BslFI	GGGAC	1 cut(s)	432
BsmFI	GGGAC	1 cut(s)	432
BsnI	GGCC	1 cut(s)	141
BsoBI	CYCGRG	1 cut(s)	103
Bsp1286I	GDGCHC	2 cut(s)	102, 214
Bsp143I	GATC	2 cut(s)	107, 460
Bsp19I	CCATGG	1 cut(s)	333
BspANI	GGCC	1 cut(s)	141
BspCNI	CTCAG	1 cut(s)	337
BspHI	TCATGA	1 cut(s)	321
BspLI	GGNNCC	2 cut(s)	211, 468
BspPI	GGATC	2 cut(s)	115, 468
BssECI	CCNNGG	2 cut(s)	205, 333
BssMI	GATC	2 cut(s)	107, 460
BssT1I	CCWWGG	2 cut(s)	205, 333
Bst4CI	ACNGT	4 cut(s)	14, 245, 272, 471
Bst6I	CTCTTC	1 cut(s)	375
BstDEI	CTNAG	2 cut(s)	345, 428
BstDSI	CCRYGG	1 cut(s)	333
BstF5I	GGATG	2 cut(s)	49, 142
BstKTI	GATC	2 cut(s)	110, 463
BstMBI	GATC	2 cut(s)	107, 460
BstMCI	CGRYCG	1 cut(s)	146
BstMWI	GCNNNNNNNGC	2 cut(s)	158, 179
BstSCI	CCNGG	1 cut(s)	145
BstV2I	GAAGAC	1 cut(s)	381
BstX2I	RGATCY	2 cut(s)	107, 460
BstYI	RGATCY	2 cut(s)	107, 460
BsuRI	GGCC	1 cut(s)	141
BtgI	CCRYGG	1 cut(s)	333
BtsCI	GGATG	2 cut(s)	49, 142
BtsIMutI	CAGTG	1 cut(s)	250
CciI	TCATGA	1 cut(s)	321
CviAII	CATG	2 cut(s)	322, 334
DdeI	CTNAG	2 cut(s)	345, 428
DpnI	GATC	2 cut(s)	109, 462
DpnII	GATC	2 cut(s)	107, 460
EaeI	YGGCCR	1 cut(s)	139
Eam1104I	CTCTTC	1 cut(s)	375
EarI	CTCTTC	1 cut(s)	375
Eco130I	CCWWGG	2 cut(s)	205, 333
Eco24I	GRGCYC	2 cut(s)	102, 214
Eco32I	GATATC	1 cut(s)	116
Eco88I	CYCGRG	1 cut(s)	103
EcoRV	GATATC	1 cut(s)	116
EcoT14I	CCWWGG	2 cut(s)	205, 333
EcoT38I	GRGCYC	2 cut(s)	102, 214
ErhI	CCWWGG	2 cut(s)	205, 333
FaeI	CATG	2 cut(s)	325, 337
FaiI	YATR	8 cut(s)	56, 61, 132, 134, 165, 297, 323, 335
FaqI	GGGAC	1 cut(s)	432
FatI	CATG	2 cut(s)	321, 333
FokI	GGATG	2 cut(s)	56, 149
FriOI	GRGCYC	2 cut(s)	102, 214
FspBI	CTAG	2 cut(s)	75, 206
HaeIII	GGCC	1 cut(s)	141
HapII	CCGG	2 cut(s)	146, 193
Hin1II	CATG	2 cut(s)	325, 337
HindIII	AAGCTT	1 cut(s)	226
HinfI	GANTC	3 cut(s)	71, 249, 325
HpaII	CCGG	2 cut(s)	146, 193
HphI	GGTGA	1 cut(s)	394
Hpy188I	TCNGA	2 cut(s)	346, 409
Hpy188III	TCNNGA	4 cut(s)	105, 111, 322, 464
HpyAV	CCTTC	1 cut(s)	339
HpyCH4III	ACNGT	4 cut(s)	14, 245, 272, 471
HpyCH4V	TGCA	1 cut(s)	308
HpyF10VI	GCNNNNNNNGC	2 cut(s)	158, 179
HpyF3I	CTNAG	2 cut(s)	345, 428
Hsp92II	CATG	2 cut(s)	325, 337
Kzo9I	GATC	2 cut(s)	107, 460
LmnI	GCTCC	3 cut(s)	83, 149, 209
LpnPI	CCDG	4 cut(s)	159, 206, 359, 449
LweI	GCATC	1 cut(s)	34
MaeI	CTAG	2 cut(s)	75, 206
MalI	GATC	2 cut(s)	109, 462
MboI	GATC	2 cut(s)	107, 460
MboII	GAAGA	5 cut(s)	310, 346, 362, 381, 384
MflI	RGATCY	2 cut(s)	107, 460
MhlI	GDGCHC	2 cut(s)	102, 214
MluCI	AATT	1 cut(s)	262
MlyI	GAGTC	1 cut(s)	80
MmeI	TCCRAC	1 cut(s)	438
MnlI	CCTC	3 cut(s)	34, 36, 277
MseI	TTAA	1 cut(s)	398
MslI	CAYNNNNRTG	1 cut(s)	64
MspI	CCGG	2 cut(s)	146, 193
MspR9I	CCNGG	1 cut(s)	147
MwoI	GCNNNNNNNGC	2 cut(s)	158, 179
NciI	CCSGG	1 cut(s)	147
NcoI	CCATGG	1 cut(s)	333
NdeII	GATC	2 cut(s)	107, 460
NlaIII	CATG	2 cut(s)	325, 337
NlaIV	GGNNCC	2 cut(s)	211, 468
PagI	TCATGA	1 cut(s)	321
PfeI	GAWTC	2 cut(s)	249, 325
PleI	GAGTC	1 cut(s)	79
PpsI	GAGTC	1 cut(s)	79
PspN4I	GGNNCC	2 cut(s)	211, 468
PsuI	RGATCY	2 cut(s)	107, 460
RseI	CAYNNNNRTG	1 cut(s)	64
SaqAI	TTAA	1 cut(s)	398
Sau3AI	GATC	2 cut(s)	107, 460
SchI	GAGTC	1 cut(s)	80
ScrFI	CCNGG	1 cut(s)	147
SduI	GDGCHC	2 cut(s)	102, 214
SetI	ASST	9 cut(s)	11, 28, 80, 131, 154, 230, 353, 414, 436
SfaNI	GCATC	1 cut(s)	34
SmiMI	CAYNNNNRTG	1 cut(s)	64
Sse9I	AATT	1 cut(s)	262
SspI	AATATT	2 cut(s)	20, 449
SspMI	CTAG	2 cut(s)	75, 206
StyD4I	CCNGG	1 cut(s)	145
StyI	CCWWGG	2 cut(s)	205, 333
TaaI	ACNGT	4 cut(s)	14, 245, 272, 471
TaqI	TCGA	2 cut(s)	39, 112
TasI	AATT	1 cut(s)	262
TfiI	GAWTC	2 cut(s)	249, 325
Tru1I	TTAA	1 cut(s)	398
Tru9I	TTAA	1 cut(s)	398
TscAI	CASTG	1 cut(s)	250
TspDTI	ATGAA	2 cut(s)	310, 455
TspGWI	ACGGA	1 cut(s)	70
TspRI	CASTG	1 cut(s)	250
XapI	RAATTY	1 cut(s)	262
XmaJI	CCTAGG	1 cut(s)	205
XspI	CTAG	2 cut(s)	75, 206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.