Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0002870

Physical Location & Seq

Genomic Coordinates Reverse (-)

32765850 .. 32766321

Gene Structure 472 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033831

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGGCAGTCAAGGATCGTAATACTTTTGGTCCAGATTCCGAACCATTTGTGGAGGTTGATCCAACCGGGCGTTTTGGAAGGTATGATGTTCTCCTTGGTAAGGGTGCTGTGAAGAAGGTGTATAGGGCATTTGATCAGCAGCAAGGTAACGAGGTGGCATGGAATAAGGTGTGGTTAAAGAAATTGAGCGACGATCCAGTGCTATCGAATCACCTTGATGCAGAGGATGTCAAGCGTAATGCTCTGAATTTCGTTACTGAGGTGTGCAATTCTGGGAACCTGAGGGATTATAGGAAGAAGCATCACCGTGTGAATACTAAGGCTTTGAAGAAGTGGTCAAAGCAGGTGCTTGAGGGATTGGAGTACCTCCATACACGAGCCATGCACCATTCACAAAGATCTCAATTGCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

138

Amino Acids

15.88

Weight (kDa)

9.6

Isoelectric Point (pI)

33.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	36 - 130	7.1e-09	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	36 - 130	8.4e-08	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002870)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g07560
malus_domestica	MD07G1154000.v1.1
pyrus_communis	pycom14g14260 pycom16g16290
rosa_chinensis	RchiOBHm_Chr3g0469611 RchiOBHm_Chr5g0078081 RchiOBHm_Chr7g0208181
rosa_laevigata	RLG00000033831
rosa_multiflora	Rmu_co8062676.1_g000002 Rmu_sc0003108.1_g000027 Rmu_sc0006483.1_g000012 Rmu_sc0018944.1_g000001 Rmu_sc0022000.1_g000001 Rmu_sc0034052.1_g000001 Rmu_sc0041954.1_g000001
rosa_roxburghii	Rroxscaffold_1G00000580 Rroxscaffold_1G00006080 Rroxscaffold_1G00008040 Rroxscaffold_1G00008480 Rroxscaffold_1G00025750 Rroxscaffold_1G00025970 Rroxscaffold_1G00030650 Rroxscaffold_2G00092550 Rroxscaffold_3G00237550 Rroxscaffold_3G00245300 Rroxscaffold_4G00312850 Rroxscaffold_4G00312880 Rroxscaffold_4G00332520 Rroxscaffold_6G00411430
rosa_rugosa	Rorug06G0481400
rosa_samantha	Rh1CG136900 Rh2AG496900 Rh2CG482900 Rh3AG152300 Rh3CG167100 Rh5CG471900 Rh5CG472000 Rh7DG242000
rosa_wichuraiana	Rw7G010120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	334
Acc36I	ACCTGC	1 cut(s)	334
AclWI	GGATC	3 cut(s)	21, 53, 188
AcsI	RAATTY	1 cut(s)	247
AdeI	CACNNNGTG	1 cut(s)	310
AfaI	GTAC	1 cut(s)	365
AfiI	CCNNNNNNNGG	1 cut(s)	100
AgsI	TTSAA	1 cut(s)	328
AlwI	GGATC	3 cut(s)	21, 53, 188
ApeKI	GCWGC	1 cut(s)	139
ApoI	RAATTY	1 cut(s)	247
AspS9I	GGNCC	1 cut(s)	29
AsuC2I	CCSGG	1 cut(s)	67
AsuHPI	GGTGA	2 cut(s)	203, 296
AvaII	GGWCC	1 cut(s)	29
AxyI	CCTNAGG	1 cut(s)	281
BauI	CACGAG	1 cut(s)	375
BbvI	GCAGC	1 cut(s)	151
BclI	TGATCA	1 cut(s)	133
BcnI	CCSGG	1 cut(s)	67
BfuAI	ACCTGC	1 cut(s)	334
BglII	AGATCT	1 cut(s)	398
BisI	GCNGC	1 cut(s)	140
BlsI	GCNGC	1 cut(s)	141
Bme1390I	CCNGG	1 cut(s)	67
Bme18I	GGWCC	1 cut(s)	29
BmgT120I	GGNCC	1 cut(s)	29
BmiI	GGNNCC	1 cut(s)	278
BmrFI	CCNGG	1 cut(s)	67
BmsI	GCATC	2 cut(s)	208, 310
BpuEI	CTTGAG	1 cut(s)	371
BpuMI	CCSGG	1 cut(s)	67
BsaJI	CCNNGG	1 cut(s)	94
Bsc4I	CCNNNNNNNGG	1 cut(s)	100
Bse1I	ACTGG	1 cut(s)	197
Bse21I	CCTNAGG	1 cut(s)	281
BseDI	CCNNGG	1 cut(s)	94
BseGI	GGATG	1 cut(s)	232
BseLI	CCNNNNNNNGG	1 cut(s)	100
BseMII	CTCAG	2 cut(s)	249, 272
BseNI	ACTGG	1 cut(s)	197
BseXI	GCAGC	1 cut(s)	151
BsiSI	CCGG	1 cut(s)	66
BslI	CCNNNNNNNGG	1 cut(s)	100
Bsp143I	GATC	5 cut(s)	13, 58, 133, 193, 398
BspCNI	CTCAG	2 cut(s)	250, 273
BspLI	GGNNCC	1 cut(s)	278
BspMI	ACCTGC	1 cut(s)	334
BspPI	GGATC	3 cut(s)	21, 53, 188
BsrI	ACTGG	1 cut(s)	197
BssECI	CCNNGG	1 cut(s)	94
BssMI	GATC	5 cut(s)	13, 58, 133, 193, 398
BssSI	CACGAG	1 cut(s)	375
BssT1I	CCWWGG	1 cut(s)	94
Bst2BI	CACGAG	1 cut(s)	375
Bst4CI	ACNGT	1 cut(s)	308
BstDEI	CTNAG	3 cut(s)	258, 281, 318
BstENI	CCTNNNNNAGG	1 cut(s)	98
BstF5I	GGATG	1 cut(s)	232
BstKTI	GATC	5 cut(s)	16, 61, 136, 196, 401
BstMBI	GATC	5 cut(s)	13, 58, 133, 193, 398
BstSCI	CCNGG	1 cut(s)	65
BstV1I	GCAGC	1 cut(s)	151
BstX2I	RGATCY	1 cut(s)	398
BstYI	RGATCY	1 cut(s)	398
Bsu36I	CCTNAGG	1 cut(s)	281
BtsCI	GGATG	1 cut(s)	232
BtsIMutI	CAGTG	1 cut(s)	204
BveI	ACCTGC	1 cut(s)	334
Cfr13I	GGNCC	1 cut(s)	29
Csp6I	GTAC	1 cut(s)	364
CviAII	CATG	2 cut(s)	159, 382
CviJI	RGCY	2 cut(s)	323, 380
CviKI_1	RGCY	2 cut(s)	323, 380
CviQI	GTAC	1 cut(s)	364
DdeI	CTNAG	3 cut(s)	258, 281, 318
DpnI	GATC	5 cut(s)	15, 60, 135, 195, 400
DpnII	GATC	5 cut(s)	13, 58, 133, 193, 398
DraIII	CACNNNGTG	1 cut(s)	310
Eco130I	CCWWGG	1 cut(s)	94
Eco47I	GGWCC	1 cut(s)	29
Eco81I	CCTNAGG	1 cut(s)	281
EcoNI	CCTNNNNNAGG	1 cut(s)	98
EcoT14I	CCWWGG	1 cut(s)	94
ErhI	CCWWGG	1 cut(s)	94
FaeI	CATG	2 cut(s)	162, 385
FaiI	YATR	6 cut(s)	84, 123, 160, 291, 372, 383
FatI	CATG	2 cut(s)	158, 381
FbaI	TGATCA	1 cut(s)	133
Fnu4HI	GCNGC	1 cut(s)	140
FokI	GGATG	1 cut(s)	239
Fsp4HI	GCNGC	1 cut(s)	140
GluI	GCNGC	1 cut(s)	140
HapII	CCGG	1 cut(s)	66
Hin1II	CATG	2 cut(s)	162, 385
HinfI	GANTC	2 cut(s)	35, 208
HpaII	CCGG	1 cut(s)	66
HphI	GGTGA	2 cut(s)	203, 296
Hpy188I	TCNGA	2 cut(s)	40, 246
Hpy188III	TCNNGA	1 cut(s)	32
Hpy99I	CGWCG	1 cut(s)	194
HpyAV	CCTTC	2 cut(s)	72, 109
HpyCH4III	ACNGT	1 cut(s)	308
HpyCH4V	TGCA	4 cut(s)	221, 267, 385, 409
HpyF3I	CTNAG	3 cut(s)	258, 281, 318
Hsp92II	CATG	2 cut(s)	162, 385
Ksp22I	TGATCA	1 cut(s)	133
Kzo9I	GATC	5 cut(s)	13, 58, 133, 193, 398
LpnPI	CCDG	6 cut(s)	45, 79, 210, 258, 293, 329
Lsp1109I	GCAGC	1 cut(s)	151
LweI	GCATC	2 cut(s)	208, 310
MaeIII	GTNAC	2 cut(s)	146, 253
MalI	GATC	5 cut(s)	15, 60, 135, 195, 400
MboI	GATC	5 cut(s)	13, 58, 133, 193, 398
MboII	GAAGA	3 cut(s)	124, 307, 340
MfeI	CAATTG	1 cut(s)	404
MflI	RGATCY	1 cut(s)	398
MluCI	AATT	4 cut(s)	182, 247, 268, 404
MmeI	TCCRAC	1 cut(s)	86
MnlI	CCTC	7 cut(s)	46, 145, 217, 253, 276, 346, 377
MseI	TTAA	1 cut(s)	176
MslI	CAYNNNNRTG	2 cut(s)	216, 306
MspI	CCGG	1 cut(s)	66
MspR9I	CCNGG	1 cut(s)	67
MunI	CAATTG	1 cut(s)	404
NciI	CCSGG	1 cut(s)	67
NdeII	GATC	5 cut(s)	13, 58, 133, 193, 398
NlaIII	CATG	2 cut(s)	162, 385
NlaIV	GGNNCC	1 cut(s)	278
PaqCI	CACCTGC	1 cut(s)	334
PfeI	GAWTC	2 cut(s)	35, 208
PkrI	GCNGC	1 cut(s)	141
PspN4I	GGNNCC	1 cut(s)	278
PspPI	GGNCC	1 cut(s)	29
PsuI	RGATCY	1 cut(s)	398
RsaI	GTAC	1 cut(s)	365
RsaNI	GTAC	1 cut(s)	364
RseI	CAYNNNNRTG	2 cut(s)	216, 306
SaqAI	TTAA	1 cut(s)	176
SatI	GCNGC	1 cut(s)	140
Sau3AI	GATC	5 cut(s)	13, 58, 133, 193, 398
Sau96I	GGNCC	1 cut(s)	29
ScrFI	CCNGG	1 cut(s)	67
SfaNI	GCATC	2 cut(s)	208, 310
SinI	GGWCC	1 cut(s)	29
SmiMI	CAYNNNNRTG	2 cut(s)	216, 306
SmlI	CTYRAG	1 cut(s)	350
SmoI	CTYRAG	1 cut(s)	350
Sse9I	AATT	4 cut(s)	182, 247, 268, 404
StyD4I	CCNGG	1 cut(s)	65
StyI	CCWWGG	1 cut(s)	94
TaaI	ACNGT	1 cut(s)	308
TaqI	TCGA	1 cut(s)	206
TasI	AATT	4 cut(s)	182, 247, 268, 404
TfiI	GAWTC	2 cut(s)	35, 208
Tru1I	TTAA	1 cut(s)	176
Tru9I	TTAA	1 cut(s)	176
TscAI	CASTG	1 cut(s)	204
TseI	GCWGC	1 cut(s)	139
TspRI	CASTG	1 cut(s)	204
VpaK11BI	GGWCC	1 cut(s)	29
XagI	CCTNNNNNAGG	1 cut(s)	98
XapI	RAATTY	1 cut(s)	247

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.