Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0002870

Physical Location & Seq

Genomic Coordinates Reverse (-)

64798722 .. 64799465

Gene Structure 744 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG482900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGAGTTCTCTTCAGAAGGCTATGTCGCTTCTGTACCCTTGTGCTACATTGAGCCCATTTTTCAGTGGGGATCATGGCAGCCTTTACGCACAATCCCCACACTACAAAGGCGAGGCAGATCTAGTATGCCCCCTCAAGCATCTAAGGATGTCCCATACAGTTTTCAGTTCCCTCCCATGATGAAGAAACCAAAGTGGTGGTGGTGGACATTAGCATGTCTCCCCTACTTAATGCTCCCACACGAGACGTGGATGCATGCTGAGACAGCCCATCACCTGCACCCTTTCCTAGAAGACTTCGAGTTCTTCACATACCCATTTCTTGGCGCCATTGGGAGTTTGCCCAGCTGGTTCTTGATGGCATACTTTTTCGTTGCATATCTTGGAATTGTGAGGAAAAAGGAGTGCCCTCACTTCTTCAGATTTCATGTGGTGATGGGCATGCTGCTGGTGATTGCCTTGCAGGTGATAGGGACTGTGAGCGGTTGGATGGTACTTGCTATTTACTGGGGTAAATTCGGGATGCACTTCTGGACAGCCGTTGCATTTGCTTACCTATTTACAGTGTTGGAGACTTGGAGTGCATACGCTGTGCTCTTGCTGGTATGTACAATGATATCCCCTTTGTTTGTGATGCTGCATATATTCAAATTCCCTATGACTAATAGGTCAAAGGAAAGCATAGGAGAAAATCAGCTGTGTTTCCATCTGTTTGAATTTTGTTGTAAGAGAGGAAACGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008565 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009706 GO:0009941 GO:0015031 GO:0015833 GO:0016020 GO:0017038 GO:0019866 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0033036 GO:0033365 GO:0034613 GO:0042170 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0072594 GO:0072596 GO:0072598

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TIC20

Protein Analysis

247

Amino Acids

28.99

Weight (kDa)

8.65

Isoelectric Point (pI)

46.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIC20	PF16166	40 - 194	1.6e-49	Chloroplast import apparatus Tic20-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002870)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g07560
malus_domestica	MD07G1154000.v1.1
pyrus_communis	pycom14g14260 pycom16g16290
rosa_chinensis	RchiOBHm_Chr3g0469611 RchiOBHm_Chr5g0078081 RchiOBHm_Chr7g0208181
rosa_laevigata	RLG00000033831
rosa_multiflora	Rmu_co8062676.1_g000002 Rmu_sc0003108.1_g000027 Rmu_sc0006483.1_g000012 Rmu_sc0018944.1_g000001 Rmu_sc0022000.1_g000001 Rmu_sc0034052.1_g000001 Rmu_sc0041954.1_g000001
rosa_roxburghii	Rroxscaffold_1G00000580 Rroxscaffold_1G00006080 Rroxscaffold_1G00008040 Rroxscaffold_1G00008480 Rroxscaffold_1G00025750 Rroxscaffold_1G00025970 Rroxscaffold_1G00030650 Rroxscaffold_2G00092550 Rroxscaffold_3G00237550 Rroxscaffold_3G00245300 Rroxscaffold_4G00312850 Rroxscaffold_4G00312880 Rroxscaffold_4G00332520 Rroxscaffold_6G00411430
rosa_rugosa	Rorug06G0481400
rosa_samantha	Rh1CG136900 Rh2AG496900 Rh2CG482900 Rh3AG152300 Rh3CG167100 Rh5CG471900 Rh5CG472000 Rh7DG242000
rosa_wichuraiana	Rw7G010120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	285, 454
AasI	GACNNNNNNGTC	1 cut(s)	667
Acc36I	ACCTGC	2 cut(s)	285, 454
AccB1I	GGYRCC	1 cut(s)	326
AccB7I	CCANNNNNTGG	1 cut(s)	323
AccBSI	CCGCTC	1 cut(s)	483
AciI	CCGC	1 cut(s)	483
AclWI	GGATC	1 cut(s)	79
AcsI	RAATTY	3 cut(s)	515, 650, 716
AcuI	CTGAAG	1 cut(s)	403
AcyI	GRCGYC	1 cut(s)	327
AfaI	GTAC	3 cut(s)	36, 495, 610
AfiI	CCNNNNNNNGG	1 cut(s)	323
AflIII	ACRYGT	1 cut(s)	738
AgsI	TTSAA	2 cut(s)	649, 716
AjiI	CACGTC	1 cut(s)	249
AluBI	AGCT	2 cut(s)	348, 697
AluI	AGCT	2 cut(s)	348, 697
Alw21I	GWGCWC	1 cut(s)	597
Alw26I	GTCTC	4 cut(s)	224, 239, 257, 566
AlwI	GGATC	1 cut(s)	79
ApeKI	GCWGC	3 cut(s)	79, 445, 637
ApoI	RAATTY	3 cut(s)	515, 650, 716
AspLEI	GCGC	1 cut(s)	329
AsuHPI	GGTGA	4 cut(s)	266, 445, 463, 478
BaeGI	GKGCMC	1 cut(s)	410
BanI	GGYRCC	1 cut(s)	326
BanII	GRGCYC	1 cut(s)	57
BauI	CACGAG	1 cut(s)	242
BbsI	GAAGAC	1 cut(s)	300
Bbv12I	GWGCWC	1 cut(s)	597
BbvI	GCAGC	3 cut(s)	91, 432, 624
BccI	CCATC	5 cut(s)	279, 352, 430, 484, 714
BceAI	ACGGC	1 cut(s)	524
BcoDI	GTCTC	4 cut(s)	224, 239, 257, 566
BfaI	CTAG	2 cut(s)	123, 290
BfoI	RGCGCY	1 cut(s)	330
BfuAI	ACCTGC	2 cut(s)	285, 454
BglII	AGATCT	1 cut(s)	119
BisI	GCNGC	3 cut(s)	80, 446, 638
BlsI	GCNGC	3 cut(s)	81, 447, 639
BmgBI	CACGTC	1 cut(s)	249
BmiI	GGNNCC	1 cut(s)	328
BmrI	ACTGGG	1 cut(s)	517
BmsI	GCATC	4 cut(s)	149, 243, 513, 624
BmuI	ACTGGG	1 cut(s)	517
BpiI	GAAGAC	1 cut(s)	300
BpuEI	CTTGAG	1 cut(s)	120
BsaHI	GRCGYC	1 cut(s)	327
Bsc4I	CCNNNNNNNGG	1 cut(s)	323
Bse1I	ACTGG	1 cut(s)	512
BseGI	GGATG	4 cut(s)	154, 258, 495, 528
BseLI	CCNNNNNNNGG	1 cut(s)	323
BseMII	CTCAG	1 cut(s)	252
BseNI	ACTGG	1 cut(s)	512
BseSI	GKGCMC	1 cut(s)	410
BseXI	GCAGC	3 cut(s)	91, 432, 624
BseYI	CCCAGC	1 cut(s)	344
BsgI	GTGCAG	1 cut(s)	263
BshNI	GGYRCC	1 cut(s)	326
BsiHKAI	GWGCWC	1 cut(s)	597
BslFI	GGGAC	2 cut(s)	137, 487
BslI	CCNNNNNNNGG	1 cut(s)	323
BsmAI	GTCTC	4 cut(s)	224, 239, 257, 566
BsmBI	CGTCTC	1 cut(s)	239
BsmFI	GGGAC	2 cut(s)	137, 487
Bsp1286I	GDGCHC	3 cut(s)	57, 410, 597
Bsp1407I	TGTACA	1 cut(s)	608
Bsp143I	GATC	2 cut(s)	71, 119
BspACI	CCGC	1 cut(s)	483
BspCNI	CTCAG	1 cut(s)	253
BspLI	GGNNCC	1 cut(s)	328
BspMI	ACCTGC	2 cut(s)	285, 454
BspPI	GGATC	1 cut(s)	79
BspT107I	GGYRCC	1 cut(s)	326
BsrBI	CCGCTC	1 cut(s)	483
BsrGI	TGTACA	1 cut(s)	608
BsrI	ACTGG	1 cut(s)	512
BssMI	GATC	2 cut(s)	71, 119
BssNI	GRCGYC	1 cut(s)	327
BssSI	CACGAG	1 cut(s)	242
Bst2BI	CACGAG	1 cut(s)	242
Bst4CI	ACNGT	3 cut(s)	161, 478, 565
Bst6I	CTCTTC	1 cut(s)	16
BstACI	GRCGYC	1 cut(s)	327
BstAUI	TGTACA	1 cut(s)	608
BstC8I	GCNNGC	2 cut(s)	258, 443
BstDEI	CTNAG	2 cut(s)	144, 261
BstF5I	GGATG	4 cut(s)	154, 258, 495, 528
BstH2I	RGCGCY	1 cut(s)	330
BstHHI	GCGC	1 cut(s)	329
BstKTI	GATC	2 cut(s)	74, 122
BstMAI	GTCTC	4 cut(s)	224, 239, 257, 566
BstMBI	GATC	2 cut(s)	71, 119
BstMWI	GCNNNNNNNGC	1 cut(s)	266
BstNSI	RCATGY	3 cut(s)	219, 260, 445
BstSLI	GKGCMC	1 cut(s)	410
BstV1I	GCAGC	3 cut(s)	91, 432, 624
BstV2I	GAAGAC	1 cut(s)	300
BstX2I	RGATCY	1 cut(s)	119
BstXI	CCANNNNNNTGG	1 cut(s)	198
BstYI	RGATCY	1 cut(s)	119
BtrI	CACGTC	1 cut(s)	249
BtsCI	GGATG	4 cut(s)	154, 258, 495, 528
BtsIMutI	CAGTG	2 cut(s)	71, 570
BveI	ACCTGC	2 cut(s)	285, 454
Cac8I	GCNNGC	2 cut(s)	258, 443
CfoI	GCGC	1 cut(s)	329
Csp6I	GTAC	3 cut(s)	35, 494, 609
CviAII	CATG	6 cut(s)	75, 178, 216, 257, 428, 442
CviJI	RGCY	7 cut(s)	21, 55, 82, 269, 348, 539, 697
CviKI_1	RGCY	7 cut(s)	21, 55, 82, 269, 348, 539, 697
CviQI	GTAC	3 cut(s)	35, 494, 609
DdeI	CTNAG	2 cut(s)	144, 261
DinI	GGCGCC	1 cut(s)	328
DpnI	GATC	2 cut(s)	73, 121
DpnII	GATC	2 cut(s)	71, 119
DrdI	GACNNNNNNGTC	1 cut(s)	667
DseDI	GACNNNNNNGTC	1 cut(s)	667
Eam1104I	CTCTTC	1 cut(s)	16
EarI	CTCTTC	1 cut(s)	16
Eco24I	GRGCYC	1 cut(s)	57
Eco32I	GATATC	1 cut(s)	618
Eco57I	CTGAAG	1 cut(s)	403
EcoRV	GATATC	1 cut(s)	618
EcoT22I	ATGCAT	1 cut(s)	258
EcoT38I	GRGCYC	1 cut(s)	57
EgeI	GGCGCC	1 cut(s)	328
EheI	GGCGCC	1 cut(s)	328
Esp3I	CGTCTC	1 cut(s)	239
FaeI	CATG	6 cut(s)	78, 181, 219, 260, 431, 445
FaqI	GGGAC	2 cut(s)	137, 487
FatI	CATG	6 cut(s)	74, 177, 215, 256, 427, 441
Fnu4HI	GCNGC	3 cut(s)	80, 446, 638
FokI	GGATG	4 cut(s)	161, 265, 502, 535
FriOI	GRGCYC	1 cut(s)	57
Fsp4HI	GCNGC	3 cut(s)	80, 446, 638
FspBI	CTAG	2 cut(s)	123, 290
GlaI	GCGC	1 cut(s)	328
GluI	GCNGC	3 cut(s)	80, 446, 638
GsaI	CCCAGC	1 cut(s)	348
HaeII	RGCGCY	1 cut(s)	330
HhaI	GCGC	1 cut(s)	329
Hin1I	GRCGYC	1 cut(s)	327
Hin1II	CATG	6 cut(s)	78, 181, 219, 260, 431, 445
Hin6I	GCGC	1 cut(s)	327
HinP1I	GCGC	1 cut(s)	327
HphI	GGTGA	4 cut(s)	266, 445, 463, 478
Hpy166II	GTNNAC	1 cut(s)	207
Hpy188I	TCNGA	2 cut(s)	16, 422
Hpy188III	TCNNGA	3 cut(s)	355, 520, 532
Hpy8I	GTNNAC	1 cut(s)	207
HpyAV	CCTTC	1 cut(s)	11
HpyCH4III	ACNGT	3 cut(s)	161, 478, 565
HpyCH4IV	ACGT	2 cut(s)	248, 738
HpyCH4V	TGCA	8 cut(s)	256, 280, 377, 463, 526, 545, 584, 640
HpyF10VI	GCNNNNNNNGC	1 cut(s)	266
HpyF3I	CTNAG	2 cut(s)	144, 261
HpySE526I	ACGT	2 cut(s)	248, 738
Hsp92I	GRCGYC	1 cut(s)	327
Hsp92II	CATG	6 cut(s)	78, 181, 219, 260, 431, 445
HspAI	GCGC	1 cut(s)	327
KasI	GGCGCC	1 cut(s)	326
Kzo9I	GATC	2 cut(s)	71, 119
LmnI	GCTCC	1 cut(s)	240
LpnPI	CCDG	8 cut(s)	290, 334, 358, 434, 449, 493, 517, 587
Lsp1109I	GCAGC	3 cut(s)	91, 432, 624
LweI	GCATC	4 cut(s)	149, 243, 513, 624
MaeI	CTAG	2 cut(s)	123, 290
MaeII	ACGT	2 cut(s)	248, 738
MalI	GATC	2 cut(s)	73, 121
MbiI	CCGCTC	1 cut(s)	483
MboI	GATC	2 cut(s)	71, 119
MboII	GAAGA	5 cut(s)	3, 196, 298, 305, 409
MflI	RGATCY	1 cut(s)	119
MhlI	GDGCHC	3 cut(s)	57, 410, 597
MluCI	AATT	4 cut(s)	387, 515, 650, 716
Mly113I	GGCGCC	1 cut(s)	327
MmeI	TCCRAC	2 cut(s)	467, 549
MnlI	CCTC	6 cut(s)	107, 144, 183, 387, 420, 725
Mph1103I	ATGCAT	1 cut(s)	258
MseI	TTAA	1 cut(s)	230
MslI	CAYNNNNRTG	1 cut(s)	214
MspA1I	CMGCKG	2 cut(s)	348, 697
MwoI	GCNNNNNNNGC	1 cut(s)	266
NarI	GGCGCC	1 cut(s)	327
NdeII	GATC	2 cut(s)	71, 119
NlaIII	CATG	6 cut(s)	78, 181, 219, 260, 431, 445
NlaIV	GGNNCC	1 cut(s)	328
NsiI	ATGCAT	1 cut(s)	258
NspI	RCATGY	3 cut(s)	219, 260, 445
PaeI	GCATGC	2 cut(s)	260, 445
PaqCI	CACCTGC	2 cut(s)	285, 454
PflMI	CCANNNNNTGG	1 cut(s)	323
PkrI	GCNGC	3 cut(s)	81, 447, 639
PluTI	GGCGCC	1 cut(s)	330
PspFI	CCCAGC	1 cut(s)	344
PspN4I	GGNNCC	1 cut(s)	328
PsuI	RGATCY	1 cut(s)	119
PvuII	CAGCTG	2 cut(s)	348, 697
RsaI	GTAC	3 cut(s)	36, 495, 610
RsaNI	GTAC	3 cut(s)	35, 494, 609
RseI	CAYNNNNRTG	1 cut(s)	214
SaqAI	TTAA	1 cut(s)	230
SatI	GCNGC	3 cut(s)	80, 446, 638
Sau3AI	GATC	2 cut(s)	71, 119
SduI	GDGCHC	3 cut(s)	57, 410, 597
SetI	ASST	8 cut(s)	251, 279, 350, 468, 558, 671, 699, 741
SfaNI	GCATC	4 cut(s)	149, 243, 513, 624
SfoI	GGCGCC	1 cut(s)	328
SmiMI	CAYNNNNRTG	1 cut(s)	214
SmlI	CTYRAG	1 cut(s)	135
SmoI	CTYRAG	1 cut(s)	135
SphI	GCATGC	2 cut(s)	260, 445
Sse9I	AATT	4 cut(s)	387, 515, 650, 716
SsiI	CCGC	1 cut(s)	483
SspDI	GGCGCC	1 cut(s)	326
SspMI	CTAG	2 cut(s)	123, 290
TaaI	ACNGT	3 cut(s)	161, 478, 565
TaiI	ACGT	2 cut(s)	251, 741
TaqI	TCGA	1 cut(s)	300
TasI	AATT	4 cut(s)	387, 515, 650, 716
TatI	WGTACW	1 cut(s)	608
Tru1I	TTAA	1 cut(s)	230
Tru9I	TTAA	1 cut(s)	230
TscAI	CASTG	2 cut(s)	71, 570
TseI	GCWGC	3 cut(s)	79, 445, 637
TspDTI	ATGAA	2 cut(s)	197, 416
TspRI	CASTG	2 cut(s)	71, 570
Van91I	CCANNNNNTGG	1 cut(s)	323
XapI	RAATTY	3 cut(s)	515, 650, 716
XceI	RCATGY	3 cut(s)	219, 260, 445
XcmI	CCANNNNNNNNNTGG	2 cut(s)	198, 246
XspI	CTAG	2 cut(s)	123, 290
Zsp2I	ATGCAT	1 cut(s)	258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.