Rroxscaffold_3G00245300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0002870
Physical Location & Seq
Forward (+)
38196793 .. 38203451
6659 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00245300.1

Sequence Viewer

Length: 351 bp
ATGGACGGCTTAGATTTGCCTATCGGCCTCGCTTATCTACAAAATAGTGGAAGGTTAGAAGGAAGACCGGGTGTGCCAGCCTTCAACGCTCCGATGCCTAAGTCGGTTATTAGAGATGACCTTAATGTAGCAGGTTTGTGGGAGCTTGGTTCCATTTCTTTCGTGTGGGACGCTCAAGGCTCCCGATATCTCCTAGAGGGTTATCGGGACCCCGCGGGGAGCTCTCCTCGCTTGTGTATTGGCGATATGAGTCTTGTGCTTCCGATACTTATGCCTAAGAGGTATGTGTATACCAACGGGAGGAACAAAGTATGCCACCACAATCCGAAAGAAAAGAAAGATAAGACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

116

Amino Acids

12.86

Weight (kDa)

8.97

Isoelectric Point (pI)

46.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 122
AccI GTMKAC 1 cut(s) 290
AccII CGCG 1 cut(s) 215
AciI CCGC 2 cut(s) 213, 215
AfiI CCNNNNNNNGG 1 cut(s) 300
AgsI TTSAA 1 cut(s) 85
AluBI AGCT 2 cut(s) 145, 222
AluI AGCT 2 cut(s) 145, 222
Alw21I GWGCWC 1 cut(s) 224
AoxI GGCC 1 cut(s) 25
AspS9I GGNCC 1 cut(s) 208
AsuC2I CCSGG 1 cut(s) 69
AvaII GGWCC 1 cut(s) 208
BanII GRGCYC 1 cut(s) 224
BbsI GAAGAC 1 cut(s) 70
Bbv12I GWGCWC 1 cut(s) 224
BceAI ACGGC 1 cut(s) 22
BcgI CGANNNNNNTGC 2 cut(s) 253, 287
BcnI CCSGG 1 cut(s) 69
BfaI CTAG 1 cut(s) 194
BfuAI ACCTGC 1 cut(s) 122
Bme1390I CCNGG 1 cut(s) 69
Bme18I GGWCC 1 cut(s) 208
BmgT120I GGNCC 1 cut(s) 208
BmiI GGNNCC 4 cut(s) 151, 181, 209, 210
BmrFI CCNGG 1 cut(s) 69
BmsI GCATC 1 cut(s) 84
BpiI GAAGAC 1 cut(s) 70
BplI GAGNNNNNCTC 2 cut(s) 211, 243
BpuEI CTTGAG 1 cut(s) 159
BpuMI CCSGG 1 cut(s) 69
BsaJI CCNNGG 1 cut(s) 213
Bsc4I CCNNNNNNNGG 1 cut(s) 300
BseDI CCNNGG 1 cut(s) 213
BseLI CCNNNNNNNGG 1 cut(s) 300
BseRI GAGGAG 1 cut(s) 216
Bsh1236I CGCG 1 cut(s) 215
BshFI GGCC 1 cut(s) 27
BsiHKAI GWGCWC 1 cut(s) 224
BsiSI CCGG 1 cut(s) 68
BslFI GGGAC 2 cut(s) 182, 221
BslI CCNNNNNNNGG 1 cut(s) 300
BsmFI GGGAC 2 cut(s) 182, 221
BsnI GGCC 1 cut(s) 27
Bsp1286I GDGCHC 1 cut(s) 224
BspACI CCGC 2 cut(s) 213, 215
BspANI GGCC 1 cut(s) 27
BspFNI CGCG 1 cut(s) 215
BspLI GGNNCC 4 cut(s) 151, 181, 209, 210
BspMI ACCTGC 1 cut(s) 122
BssECI CCNNGG 1 cut(s) 213
BssNAI GTATAC 1 cut(s) 291
Bst1107I GTATAC 1 cut(s) 291
BstC8I GCNNGC 1 cut(s) 78
BstDEI CTNAG 3 cut(s) 10, 99, 276
BstDSI CCRYGG 1 cut(s) 213
BstFNI CGCG 1 cut(s) 215
BstMWI GCNNNNNNNGC 2 cut(s) 86, 228
BstSCI CCNGG 1 cut(s) 67
BstUI CGCG 1 cut(s) 215
BstV2I GAAGAC 1 cut(s) 70
BstZ17I GTATAC 1 cut(s) 291
BsuRI GGCC 1 cut(s) 27
BtgI CCRYGG 1 cut(s) 213
BveI ACCTGC 1 cut(s) 122
Cac8I GCNNGC 1 cut(s) 78
Cfr13I GGNCC 1 cut(s) 208
Cfr42I CCGCGG 1 cut(s) 216
CseI GACGC 1 cut(s) 179
CviJI RGCY 6 cut(s) 9, 27, 80, 145, 180, 222
CviKI_1 RGCY 6 cut(s) 9, 27, 80, 145, 180, 222
DdeI CTNAG 3 cut(s) 10, 99, 276
Ecl136II GAGCTC 1 cut(s) 222
Eco24I GRGCYC 1 cut(s) 224
Eco32I GATATC 1 cut(s) 188
Eco47I GGWCC 1 cut(s) 208
Eco53kI GAGCTC 1 cut(s) 222
EcoICRI GAGCTC 1 cut(s) 222
EcoO109I RGGNCCY 1 cut(s) 208
EcoRV GATATC 1 cut(s) 188
EcoT38I GRGCYC 1 cut(s) 224
FaiI YATR 5 cut(s) 248, 272, 285, 291, 313
FaqI GGGAC 2 cut(s) 182, 221
FauI CCCGC 2 cut(s) 208, 220
FblI GTMKAC 1 cut(s) 290
FriOI GRGCYC 1 cut(s) 224
FspBI CTAG 1 cut(s) 194
HaeIII GGCC 1 cut(s) 27
HapII CCGG 1 cut(s) 68
HgaI GACGC 1 cut(s) 179
HinfI GANTC 1 cut(s) 250
HpaII CCGG 1 cut(s) 68
Hpy166II GTNNAC 1 cut(s) 291
Hpy188I TCNGA 3 cut(s) 93, 264, 327
Hpy188III TCNNGA 2 cut(s) 183, 206
Hpy8I GTNNAC 1 cut(s) 291
HpyAV CCTTC 3 cut(s) 45, 53, 91
HpyF10VI GCNNNNNNNGC 2 cut(s) 86, 228
HpyF3I CTNAG 3 cut(s) 10, 99, 276
KflI GGGWCCC 1 cut(s) 208
KspI CCGCGG 1 cut(s) 216
LmnI GCTCC 4 cut(s) 94, 142, 185, 219
LpnPI CCDG 3 cut(s) 81, 90, 117
LweI GCATC 1 cut(s) 84
MaeI CTAG 1 cut(s) 194
MboII GAAGA 1 cut(s) 75
MhlI GDGCHC 1 cut(s) 224
MlyI GAGTC 1 cut(s) 259
MnlI CCTC 5 cut(s) 38, 190, 237, 273, 294
MseI TTAA 1 cut(s) 123
MspA1I CMGCKG 1 cut(s) 215
MspI CCGG 1 cut(s) 68
MspR9I CCNGG 1 cut(s) 69
MvnI CGCG 1 cut(s) 215
MwoI GCNNNNNNNGC 2 cut(s) 86, 228
NciI CCSGG 1 cut(s) 69
NlaIV GGNNCC 4 cut(s) 151, 181, 209, 210
PleI GAGTC 1 cut(s) 258
PpsI GAGTC 1 cut(s) 258
PpuMI RGGWCCY 1 cut(s) 208
Psp124BI GAGCTC 1 cut(s) 224
Psp5II RGGWCCY 1 cut(s) 208
PspN4I GGNNCC 4 cut(s) 151, 181, 209, 210
PspPI GGNCC 1 cut(s) 208
PspPPI RGGWCCY 1 cut(s) 208
SacI GAGCTC 1 cut(s) 224
SacII CCGCGG 1 cut(s) 216
SaqAI TTAA 1 cut(s) 123
Sau96I GGNCC 1 cut(s) 208
SchI GAGTC 1 cut(s) 259
ScrFI CCNGG 1 cut(s) 69
SduI GDGCHC 1 cut(s) 224
SetI ASST 7 cut(s) 56, 123, 136, 147, 224, 284, 350
SfaNI GCATC 1 cut(s) 84
Sfr303I CCGCGG 1 cut(s) 216
SgrBI CCGCGG 1 cut(s) 216
SinI GGWCC 1 cut(s) 208
SmlI CTYRAG 1 cut(s) 174
SmoI CTYRAG 1 cut(s) 174
SsiI CCGC 2 cut(s) 213, 215
SspMI CTAG 1 cut(s) 194
SstI GAGCTC 1 cut(s) 224
StyD4I CCNGG 1 cut(s) 67
Tru1I TTAA 1 cut(s) 123
Tru9I TTAA 1 cut(s) 123
VpaK11BI GGWCC 1 cut(s) 208
XmiI GTMKAC 1 cut(s) 290
XspI CTAG 1 cut(s) 194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.