Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0002870

Physical Location & Seq

Genomic Coordinates Forward (+)

22394618 .. 22395844

Gene Structure 1227 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1154000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGTTCGGTAATGGGTCACATTTTGATGGAAAGTACAATGAAATATTGGGCAAAGGTGCCTTCAAGACTGTCTACAAGGCATTCGATGAAGTTGATGGAATAGAAGTGGCTTGGAGCCGGGTGAAGGTTGATGCTGTCTTGCGATCACCAGAAGATTTGGAAAAATTGTATTCTGAAGTTCATCTTCTGAAATCACTGAAACATGAAAATATTATTAAGTTCCATAATTCATGGGTGGATGATCAGAAAAATACGATTAACATGATTACGGAGCTCTTCACATCTGGAGCTCTTCACATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OSR1_C Pkinase

Protein Analysis

101

Amino Acids

11.43

Weight (kDa)

5.91

Isoelectric Point (pI)

30.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	12 - 99	1e-08	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	13 - 99	1.7e-11	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002870)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g07560
malus_domestica	MD07G1154000.v1.1
pyrus_communis	pycom14g14260 pycom16g16290
rosa_chinensis	RchiOBHm_Chr3g0469611 RchiOBHm_Chr5g0078081 RchiOBHm_Chr7g0208181
rosa_laevigata	RLG00000033831
rosa_multiflora	Rmu_co8062676.1_g000002 Rmu_sc0003108.1_g000027 Rmu_sc0006483.1_g000012 Rmu_sc0018944.1_g000001 Rmu_sc0022000.1_g000001 Rmu_sc0034052.1_g000001 Rmu_sc0041954.1_g000001
rosa_roxburghii	Rroxscaffold_1G00000580 Rroxscaffold_1G00006080 Rroxscaffold_1G00008040 Rroxscaffold_1G00008480 Rroxscaffold_1G00025750 Rroxscaffold_1G00025970 Rroxscaffold_1G00030650 Rroxscaffold_2G00092550 Rroxscaffold_3G00237550 Rroxscaffold_3G00245300 Rroxscaffold_4G00312850 Rroxscaffold_4G00312880 Rroxscaffold_4G00332520 Rroxscaffold_6G00411430
rosa_rugosa	Rorug06G0481400
rosa_samantha	Rh1CG136900 Rh2AG496900 Rh2CG482900 Rh3AG152300 Rh3CG167100 Rh5CG471900 Rh5CG472000 Rh7DG242000
rosa_wichuraiana	Rw7G010120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	56
AccI	GTMKAC	1 cut(s)	72
AcuI	CTGAAG	1 cut(s)	195
AfaI	GTAC	1 cut(s)	35
AfiI	CCNNNNNNNGG	1 cut(s)	124
AgsI	TTSAA	1 cut(s)	64
AluBI	AGCT	2 cut(s)	274, 290
AluI	AGCT	2 cut(s)	274, 290
Alw21I	GWGCWC	2 cut(s)	276, 292
AsuC2I	CCSGG	1 cut(s)	119
AsuHPI	GGTGA	2 cut(s)	133, 138
BanI	GGYRCC	1 cut(s)	56
BanII	GRGCYC	2 cut(s)	276, 292
Bbv12I	GWGCWC	2 cut(s)	276, 292
BccI	CCATC	2 cut(s)	20, 89
BclI	TGATCA	1 cut(s)	241
BcnI	CCSGG	1 cut(s)	119
Bme1390I	CCNGG	1 cut(s)	119
BmiI	GGNNCC	2 cut(s)	58, 116
BmrFI	CCNGG	1 cut(s)	119
BmsI	GCATC	1 cut(s)	121
BpuMI	CCSGG	1 cut(s)	119
Bsc4I	CCNNNNNNNGG	1 cut(s)	124
BseGI	GGATG	1 cut(s)	244
BseLI	CCNNNNNNNGG	1 cut(s)	124
BshNI	GGYRCC	1 cut(s)	56
BsiHKAI	GWGCWC	2 cut(s)	276, 292
BsiSI	CCGG	1 cut(s)	118
BslI	CCNNNNNNNGG	1 cut(s)	124
BsmI	GAATGC	1 cut(s)	80
Bsp1286I	GDGCHC	2 cut(s)	276, 292
Bsp143I	GATC	2 cut(s)	143, 241
BspLI	GGNNCC	2 cut(s)	58, 116
BspQI	GCTCTTC	2 cut(s)	281, 297
BspT107I	GGYRCC	1 cut(s)	56
BssMI	GATC	2 cut(s)	143, 241
Bst4CI	ACNGT	1 cut(s)	70
Bst6I	CTCTTC	2 cut(s)	281, 297
BstF5I	GGATG	1 cut(s)	244
BstKTI	GATC	2 cut(s)	146, 244
BstMBI	GATC	2 cut(s)	143, 241
BstSCI	CCNGG	1 cut(s)	117
BtsCI	GGATG	1 cut(s)	244
BtsIMutI	CAGTG	1 cut(s)	194
Csp6I	GTAC	1 cut(s)	34
CviAII	CATG	3 cut(s)	203, 231, 262
CviJI	RGCY	4 cut(s)	110, 117, 274, 290
CviKI_1	RGCY	4 cut(s)	110, 117, 274, 290
CviQI	GTAC	1 cut(s)	34
DpnI	GATC	2 cut(s)	145, 243
DpnII	GATC	2 cut(s)	143, 241
Eam1104I	CTCTTC	2 cut(s)	281, 297
EarI	CTCTTC	2 cut(s)	281, 297
Ecl136II	GAGCTC	2 cut(s)	274, 290
Eco24I	GRGCYC	2 cut(s)	276, 292
Eco53kI	GAGCTC	2 cut(s)	274, 290
Eco57I	CTGAAG	1 cut(s)	195
EcoICRI	GAGCTC	2 cut(s)	274, 290
EcoT38I	GRGCYC	2 cut(s)	276, 292
FaeI	CATG	3 cut(s)	206, 234, 265
FaiI	YATR	4 cut(s)	204, 225, 232, 263
FalI	AAGNNNNNCTT	2 cut(s)	168, 200
FatI	CATG	3 cut(s)	202, 230, 261
FbaI	TGATCA	1 cut(s)	241
FblI	GTMKAC	1 cut(s)	72
FokI	GGATG	1 cut(s)	251
FriOI	GRGCYC	2 cut(s)	276, 292
HapII	CCGG	1 cut(s)	118
Hin1II	CATG	3 cut(s)	206, 234, 265
HpaII	CCGG	1 cut(s)	118
HphI	GGTGA	2 cut(s)	133, 138
Hpy166II	GTNNAC	1 cut(s)	73
Hpy188I	TCNGA	4 cut(s)	175, 189, 246, 302
Hpy188III	TCNNGA	2 cut(s)	64, 285
Hpy8I	GTNNAC	1 cut(s)	73
HpyAV	CCTTC	2 cut(s)	70, 118
HpyCH4III	ACNGT	1 cut(s)	70
Hsp92II	CATG	3 cut(s)	206, 234, 265
Ksp22I	TGATCA	1 cut(s)	241
Kzo9I	GATC	2 cut(s)	143, 241
LguI	GCTCTTC	2 cut(s)	281, 297
LmnI	GCTCC	3 cut(s)	114, 271, 287
LpnPI	CCDG	3 cut(s)	131, 162, 270
LweI	GCATC	1 cut(s)	121
MaeIII	GTNAC	1 cut(s)	15
MalI	GATC	2 cut(s)	145, 243
MboI	GATC	2 cut(s)	143, 241
MboII	GAAGA	4 cut(s)	164, 176, 268, 284
MhlI	GDGCHC	2 cut(s)	276, 292
MluCI	AATT	2 cut(s)	164, 226
MseI	TTAA	2 cut(s)	216, 258
MslI	CAYNNNNRTG	1 cut(s)	24
MspI	CCGG	1 cut(s)	118
MspR9I	CCNGG	1 cut(s)	119
Mva1269I	GAATGC	1 cut(s)	80
NciI	CCSGG	1 cut(s)	119
NdeII	GATC	2 cut(s)	143, 241
NlaIII	CATG	3 cut(s)	206, 234, 265
NlaIV	GGNNCC	2 cut(s)	58, 116
NmuCI	GTSAC	1 cut(s)	15
PciSI	GCTCTTC	2 cut(s)	281, 297
PctI	GAATGC	1 cut(s)	80
Psp124BI	GAGCTC	2 cut(s)	276, 292
PspN4I	GGNNCC	2 cut(s)	58, 116
RsaI	GTAC	1 cut(s)	35
RsaNI	GTAC	1 cut(s)	34
RseI	CAYNNNNRTG	1 cut(s)	24
SacI	GAGCTC	2 cut(s)	276, 292
SapI	GCTCTTC	2 cut(s)	281, 297
SaqAI	TTAA	2 cut(s)	216, 258
Sau3AI	GATC	2 cut(s)	143, 241
ScrFI	CCNGG	1 cut(s)	119
SduI	GDGCHC	2 cut(s)	276, 292
SetI	ASST	4 cut(s)	58, 129, 276, 292
SfaNI	GCATC	1 cut(s)	121
SmiMI	CAYNNNNRTG	1 cut(s)	24
Sse9I	AATT	2 cut(s)	164, 226
SspI	AATATT	2 cut(s)	45, 211
SstI	GAGCTC	2 cut(s)	276, 292
StyD4I	CCNGG	1 cut(s)	117
TaaI	ACNGT	1 cut(s)	70
TaqI	TCGA	1 cut(s)	84
TasI	AATT	2 cut(s)	164, 226
TatI	WGTACW	1 cut(s)	33
Tru1I	TTAA	2 cut(s)	216, 258
Tru9I	TTAA	2 cut(s)	216, 258
TscAI	CASTG	1 cut(s)	201
TseFI	GTSAC	1 cut(s)	15
Tsp45I	GTSAC	1 cut(s)	15
TspDTI	ATGAA	5 cut(s)	54, 102, 170, 219, 219
TspGWI	ACGGA	1 cut(s)	284
TspRI	CASTG	1 cut(s)	201
XmiI	GTMKAC	1 cut(s)	72

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.